Strain Fitness in Escherichia coli BW25113 around b2615

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfjD and grpE are separated by 54 nucleotidesgrpE and yfjB are separated by 122 nucleotidesyfjB and recN are separated by 85 nucleotides b4461: yfjD - predicted inner membrane protein (RefSeq), at 2,746,796 to 2,748,082 yfjD b2614: grpE - heat shock protein (NCBI), at 2,748,137 to 2,748,730 grpE b2615: yfjB - inorganic polyphosphate/ATP-NAD kinase (NCBI), at 2,748,853 to 2,749,731 yfjB b2616: recN - recombination and repair protein (NCBI), at 2,749,817 to 2,751,478 recN Position (kb) 2748 2749 2750Strain fitness (log2 ratio) -2 -1 0 1 2at 2747.955 kb on + strandat 2747.984 kb on + strandat 2748.001 kb on - strandat 2748.011 kb on + strandat 2748.025 kb on + strandat 2748.069 kb on - strandat 2748.571 kb on - strand, within grpEat 2748.623 kb on - strand, within grpEat 2748.804 kb on + strandat 2748.810 kb on + strandat 2748.818 kb on - strandat 2749.817 kb on + strandat 2749.825 kb on - strandat 2749.916 kb on + strandat 2749.924 kb on - strandat 2749.928 kb on + strandat 2749.932 kb on + strandat 2749.932 kb on + strandat 2749.948 kb on + strandat 2749.969 kb on + strandat 2749.979 kb on + strandat 2749.979 kb on + strandat 2750.132 kb on - strand, within recNat 2750.174 kb on + strand, within recNat 2750.221 kb on - strand, within recNat 2750.224 kb on + strand, within recNat 2750.252 kb on + strand, within recNat 2750.257 kb on + strand, within recNat 2750.287 kb on - strand, within recNat 2750.287 kb on - strand, within recNat 2750.320 kb on + strand, within recNat 2750.320 kb on + strand, within recNat 2750.328 kb on - strand, within recNat 2750.343 kb on + strand, within recNat 2750.363 kb on - strand, within recNat 2750.363 kb on - strand, within recNat 2750.580 kb on - strand, within recNat 2750.624 kb on - strand, within recNat 2750.651 kb on - strand, within recNat 2750.658 kb on + strand, within recNat 2750.663 kb on + strand, within recNat 2750.663 kb on + strand, within recNat 2750.682 kb on - strand, within recNat 2750.715 kb on + strand, within recN

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,747,955 + +0.2
2,747,984 + -0.1
2,748,001 - +0.9
2,748,011 + +1.0
2,748,025 + -0.2
2,748,069 - +0.9
2,748,571 - grpE b2614 0.73 -1.6
2,748,623 - grpE b2614 0.82 +0.4
2,748,804 + +1.4
2,748,810 + +0.1
2,748,818 - +0.4
2,749,817 + +0.8
2,749,825 - +0.3
2,749,916 + +0.7
2,749,924 - +0.5
2,749,928 + +0.3
2,749,932 + -2.2
2,749,932 + +1.1
2,749,948 + -1.1
2,749,969 + +0.2
2,749,979 + -0.5
2,749,979 + +1.7
2,750,132 - recN b2616 0.19 +0.9
2,750,174 + recN b2616 0.21 -0.6
2,750,221 - recN b2616 0.24 +0.2
2,750,224 + recN b2616 0.24 -1.8
2,750,252 + recN b2616 0.26 +0.4
2,750,257 + recN b2616 0.26 +0.1
2,750,287 - recN b2616 0.28 +0.3
2,750,287 - recN b2616 0.28 +0.0
2,750,320 + recN b2616 0.30 -1.1
2,750,320 + recN b2616 0.30 -0.8
2,750,328 - recN b2616 0.31 -0.1
2,750,343 + recN b2616 0.32 -0.9
2,750,363 - recN b2616 0.33 -0.4
2,750,363 - recN b2616 0.33 +0.5
2,750,580 - recN b2616 0.46 +0.8
2,750,624 - recN b2616 0.49 -0.3
2,750,651 - recN b2616 0.50 +0.5
2,750,658 + recN b2616 0.51 -0.2
2,750,663 + recN b2616 0.51 +2.1
2,750,663 + recN b2616 0.51 -0.1
2,750,682 - recN b2616 0.52 +0.9
2,750,715 + recN b2616 0.54 +0.4

Or see this region's nucleotide sequence