Strain Fitness in Escherichia coli BW25113 around b1740

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntchbB and osmE are separated by 298 nucleotidesosmE and nadE are separated by 201 nucleotidesnadE and ydjQ are separated by 229 nucleotides b1738: chbB - N,N'-diacetylchitobiose-specific enzyme IIB component of PTS (NCBI), at 1,819,323 to 1,819,643 chbB b1739: osmE - DNA-binding transcriptional activator (NCBI), at 1,819,942 to 1,820,280 osmE b1740: nadE - NAD synthetase (NCBI), at 1,820,482 to 1,821,309 nadE b1741: ydjQ - endonuclease of nucleotide excision repair (NCBI), at 1,821,539 to 1,822,426 ydjQ Position (kb) 1820 1821 1822Strain fitness (log2 ratio) -2 -1 0 1at 1819.595 kb on - strand, within chbBat 1819.595 kb on - strand, within chbBat 1819.709 kb on - strandat 1819.711 kb on - strandat 1819.711 kb on - strandat 1819.756 kb on - strandat 1819.758 kb on + strandat 1819.761 kb on - strandat 1819.773 kb on - strandat 1819.773 kb on - strandat 1819.773 kb on - strandat 1819.959 kb on + strandat 1819.981 kb on + strand, within osmEat 1819.996 kb on + strand, within osmEat 1820.033 kb on - strand, within osmEat 1820.215 kb on - strand, within osmEat 1821.338 kb on - strandat 1821.454 kb on + strandat 1821.462 kb on - strandat 1821.680 kb on - strand, within ydjQat 1821.871 kb on - strand, within ydjQat 1821.878 kb on + strand, within ydjQat 1821.927 kb on + strand, within ydjQat 1821.927 kb on + strand, within ydjQat 1822.080 kb on + strand, within ydjQat 1822.080 kb on + strand, within ydjQat 1822.304 kb on + strand, within ydjQ

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,819,595 - chbB b1738 0.85 -0.2
1,819,595 - chbB b1738 0.85 +0.8
1,819,709 - +0.3
1,819,711 - -0.1
1,819,711 - -0.9
1,819,756 - +0.4
1,819,758 + +0.8
1,819,761 - -0.7
1,819,773 - +1.4
1,819,773 - +0.3
1,819,773 - +0.8
1,819,959 + -1.9
1,819,981 + osmE b1739 0.12 +0.1
1,819,996 + osmE b1739 0.16 -0.2
1,820,033 - osmE b1739 0.27 +1.2
1,820,215 - osmE b1739 0.81 -1.3
1,821,338 - +0.2
1,821,454 + -1.0
1,821,462 - +0.8
1,821,680 - ydjQ b1741 0.16 -0.9
1,821,871 - ydjQ b1741 0.37 +0.8
1,821,878 + ydjQ b1741 0.38 -0.7
1,821,927 + ydjQ b1741 0.44 -2.1
1,821,927 + ydjQ b1741 0.44 +0.4
1,822,080 + ydjQ b1741 0.61 +0.1
1,822,080 + ydjQ b1741 0.61 -1.2
1,822,304 + ydjQ b1741 0.86 -0.6

Or see this region's nucleotide sequence