Strain Fitness in Escherichia coli BW25113 around b1422

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttrg and ydcI are separated by 37 nucleotidesydcI and ydcJ are separated by 216 nucleotides b1421: trg - methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI), at 1,490,494 to 1,492,134 trg b1422: ydcI - putative transcriptional regulator LYSR-type (VIMSS), at 1,492,172 to 1,493,095 ydcI b1423: ydcJ - hypothetical protein (NCBI), at 1,493,312 to 1,494,655 ydcJ Position (kb) 1492 1493 1494Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1491.587 kb on - strand, within trgat 1491.647 kb on + strand, within trgat 1491.674 kb on - strand, within trgat 1491.688 kb on + strand, within trgat 1492.168 kb on - strandat 1492.168 kb on - strandat 1492.510 kb on + strand, within ydcIat 1492.510 kb on + strand, within ydcIat 1492.540 kb on + strand, within ydcIat 1492.602 kb on + strand, within ydcIat 1492.771 kb on + strand, within ydcIat 1492.857 kb on - strand, within ydcIat 1492.857 kb on - strand, within ydcIat 1492.914 kb on - strand, within ydcIat 1492.953 kb on - strand, within ydcIat 1492.970 kb on - strand, within ydcIat 1492.970 kb on - strand, within ydcIat 1493.290 kb on - strandat 1493.433 kb on - strandat 1493.545 kb on - strand, within ydcJat 1493.581 kb on - strand, within ydcJat 1493.704 kb on - strand, within ydcJat 1494.003 kb on + strand, within ydcJ

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
1,491,587 - trg b1421 0.67 +0.4
1,491,647 + trg b1421 0.70 +0.1
1,491,674 - trg b1421 0.72 +3.3
1,491,688 + trg b1421 0.73 -1.5
1,492,168 - -0.6
1,492,168 - +0.8
1,492,510 + ydcI b1422 0.37 +1.7
1,492,510 + ydcI b1422 0.37 +1.9
1,492,540 + ydcI b1422 0.40 -0.1
1,492,602 + ydcI b1422 0.47 +1.5
1,492,771 + ydcI b1422 0.65 +1.2
1,492,857 - ydcI b1422 0.74 +1.1
1,492,857 - ydcI b1422 0.74 +1.8
1,492,914 - ydcI b1422 0.80 +0.5
1,492,953 - ydcI b1422 0.85 +0.8
1,492,970 - ydcI b1422 0.86 +1.8
1,492,970 - ydcI b1422 0.86 +1.1
1,493,290 - -0.3
1,493,433 - +0.1
1,493,545 - ydcJ b1423 0.17 -1.5
1,493,581 - ydcJ b1423 0.20 +0.0
1,493,704 - ydcJ b1423 0.29 -3.6
1,494,003 + ydcJ b1423 0.51 +0.1

Or see this region's nucleotide sequence