Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS06755 and RPSI07_RS06760 are separated by 56 nucleotides RPSI07_RS06760 and RPSI07_RS06765 overlap by 11 nucleotides RPSI07_RS06765 and RPSI07_RS06770 are separated by 50 nucleotides
RPSI07_RS06755: RPSI07_RS06755 - GntR family transcriptional regulator, at 1,812,239 to 1,812,961
_RS06755
RPSI07_RS06760: RPSI07_RS06760 - ABC transporter ATP-binding protein, at 1,813,018 to 1,813,803
_RS06760
RPSI07_RS06765: RPSI07_RS06765 - ABC transporter permease, at 1,813,793 to 1,814,689
_RS06765
RPSI07_RS06770: RPSI07_RS06770 - ABC transporter substrate-binding protein, at 1,814,740 to 1,815,792
_RS06770
Position (kb) 1813
1814 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1812.094 kb on + strand at 1812.095 kb on - strand at 1812.095 kb on - strand at 1812.176 kb on + strand at 1812.176 kb on + strand at 1812.177 kb on - strand at 1812.177 kb on - strand at 1812.201 kb on + strand at 1812.201 kb on + strand at 1812.202 kb on - strand at 1812.202 kb on - strand at 1812.216 kb on + strand at 1812.217 kb on - strand at 1812.217 kb on - strand at 1812.218 kb on + strand at 1812.218 kb on + strand at 1812.218 kb on + strand at 1812.218 kb on + strand at 1812.218 kb on + strand at 1812.218 kb on + strand at 1812.218 kb on + strand at 1812.218 kb on + strand at 1812.218 kb on + strand at 1812.218 kb on + strand at 1812.218 kb on + strand at 1812.219 kb on - strand at 1812.219 kb on - strand at 1812.219 kb on - strand at 1812.219 kb on - strand at 1812.219 kb on - strand at 1812.219 kb on - strand at 1812.219 kb on - strand at 1812.226 kb on + strand at 1812.226 kb on + strand at 1812.226 kb on + strand at 1812.227 kb on - strand at 1812.227 kb on - strand at 1812.227 kb on - strand at 1812.362 kb on + strand, within RPSI07_RS06755 at 1812.363 kb on - strand, within RPSI07_RS06755 at 1812.363 kb on - strand, within RPSI07_RS06755 at 1812.747 kb on - strand, within RPSI07_RS06755 at 1812.818 kb on + strand, within RPSI07_RS06755 at 1812.818 kb on + strand, within RPSI07_RS06755 at 1812.818 kb on + strand, within RPSI07_RS06755 at 1812.819 kb on - strand, within RPSI07_RS06755 at 1812.819 kb on - strand, within RPSI07_RS06755 at 1812.884 kb on + strand, within RPSI07_RS06755 at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.954 kb on + strand at 1812.955 kb on - strand at 1812.955 kb on - strand at 1812.955 kb on - strand at 1812.955 kb on - strand at 1812.955 kb on - strand at 1812.955 kb on - strand at 1812.955 kb on - strand at 1812.955 kb on - strand at 1812.956 kb on - strand at 1812.960 kb on - strand at 1813.069 kb on + strand at 1813.069 kb on + strand at 1813.069 kb on + strand at 1813.069 kb on + strand at 1813.069 kb on + strand at 1813.069 kb on + strand at 1813.070 kb on - strand at 1813.070 kb on - strand at 1813.070 kb on - strand at 1813.070 kb on - strand at 1813.070 kb on - strand at 1813.102 kb on + strand, within RPSI07_RS06760 at 1813.102 kb on + strand, within RPSI07_RS06760 at 1813.102 kb on + strand, within RPSI07_RS06760 at 1813.103 kb on - strand, within RPSI07_RS06760 at 1813.103 kb on - strand, within RPSI07_RS06760 at 1813.103 kb on - strand, within RPSI07_RS06760 at 1813.123 kb on + strand, within RPSI07_RS06760 at 1813.199 kb on - strand, within RPSI07_RS06760 at 1813.199 kb on - strand, within RPSI07_RS06760 at 1813.854 kb on - strand at 1813.923 kb on - strand, within RPSI07_RS06765 at 1813.923 kb on - strand, within RPSI07_RS06765 at 1814.381 kb on + strand, within RPSI07_RS06765 at 1814.381 kb on + strand, within RPSI07_RS06765 at 1814.381 kb on + strand, within RPSI07_RS06765 at 1814.381 kb on + strand, within RPSI07_RS06765 at 1814.381 kb on + strand, within RPSI07_RS06765 at 1814.381 kb on + strand, within RPSI07_RS06765 at 1814.382 kb on - strand, within RPSI07_RS06765 at 1814.382 kb on - strand, within RPSI07_RS06765 at 1814.382 kb on - strand, within RPSI07_RS06765 at 1814.382 kb on - strand, within RPSI07_RS06765 at 1814.402 kb on + strand, within RPSI07_RS06765 at 1814.402 kb on + strand, within RPSI07_RS06765 at 1814.402 kb on + strand, within RPSI07_RS06765 at 1814.403 kb on - strand, within RPSI07_RS06765 at 1814.543 kb on + strand, within RPSI07_RS06765 at 1814.543 kb on + strand, within RPSI07_RS06765 at 1814.543 kb on + strand, within RPSI07_RS06765 at 1814.543 kb on + strand, within RPSI07_RS06765 at 1814.543 kb on + strand, within RPSI07_RS06765 at 1814.543 kb on + strand, within RPSI07_RS06765 at 1814.544 kb on - strand, within RPSI07_RS06765 at 1814.544 kb on - strand, within RPSI07_RS06765 at 1814.544 kb on - strand, within RPSI07_RS06765 at 1814.549 kb on + strand, within RPSI07_RS06765 at 1814.549 kb on + strand, within RPSI07_RS06765 at 1814.549 kb on + strand, within RPSI07_RS06765 at 1814.549 kb on + strand, within RPSI07_RS06765 at 1814.549 kb on + strand, within RPSI07_RS06765 at 1814.549 kb on + strand, within RPSI07_RS06765 at 1814.549 kb on + strand, within RPSI07_RS06765 at 1814.549 kb on + strand, within RPSI07_RS06765 at 1814.549 kb on + strand, within RPSI07_RS06765 at 1814.549 kb on + strand, within RPSI07_RS06765 at 1814.549 kb on + strand, within RPSI07_RS06765 at 1814.550 kb on - strand, within RPSI07_RS06765 at 1814.550 kb on - strand, within RPSI07_RS06765 at 1814.550 kb on - strand, within RPSI07_RS06765 at 1814.550 kb on - strand, within RPSI07_RS06765 at 1814.550 kb on - strand, within RPSI07_RS06765 at 1814.550 kb on - strand, within RPSI07_RS06765
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,812,094 + -0.0 1,812,095 - -1.3 1,812,095 - -1.7 1,812,176 + +2.0 1,812,176 + -0.7 1,812,177 - +0.6 1,812,177 - +0.2 1,812,201 + -0.4 1,812,201 + -0.5 1,812,202 - +2.1 1,812,202 - -0.2 1,812,216 + -2.6 1,812,217 - -0.3 1,812,217 - +2.3 1,812,218 + -0.1 1,812,218 + +1.1 1,812,218 + +0.0 1,812,218 + -0.4 1,812,218 + -0.4 1,812,218 + -0.0 1,812,218 + +0.2 1,812,218 + -1.0 1,812,218 + -0.7 1,812,218 + +0.5 1,812,218 + -0.2 1,812,219 - +0.4 1,812,219 - +0.6 1,812,219 - +2.2 1,812,219 - +0.8 1,812,219 - -1.0 1,812,219 - -0.2 1,812,219 - -1.2 1,812,226 + +0.1 1,812,226 + +0.2 1,812,226 + +0.1 1,812,227 - -0.3 1,812,227 - +0.2 1,812,227 - +0.2 1,812,362 + RPSI07_RS06755 0.17 -0.1 1,812,363 - RPSI07_RS06755 0.17 +0.4 1,812,363 - RPSI07_RS06755 0.17 +0.0 1,812,747 - RPSI07_RS06755 0.70 +0.5 1,812,818 + RPSI07_RS06755 0.80 -1.4 1,812,818 + RPSI07_RS06755 0.80 -1.9 1,812,818 + RPSI07_RS06755 0.80 -0.5 1,812,819 - RPSI07_RS06755 0.80 -0.2 1,812,819 - RPSI07_RS06755 0.80 +0.2 1,812,884 + RPSI07_RS06755 0.89 -0.6 1,812,954 + +0.5 1,812,954 + -0.6 1,812,954 + +0.4 1,812,954 + -1.9 1,812,954 + -1.5 1,812,954 + -0.7 1,812,954 + +0.9 1,812,954 + -0.3 1,812,954 + -0.2 1,812,954 + +3.0 1,812,954 + +1.0 1,812,954 + +0.7 1,812,954 + -0.7 1,812,954 + +0.8 1,812,954 + -0.3 1,812,955 - -0.3 1,812,955 - -0.1 1,812,955 - -1.5 1,812,955 - -2.2 1,812,955 - +0.5 1,812,955 - +1.4 1,812,955 - -1.1 1,812,955 - +0.4 1,812,956 - +0.5 1,812,960 - -0.4 1,813,069 + +0.1 1,813,069 + -0.3 1,813,069 + -0.0 1,813,069 + -0.1 1,813,069 + -1.5 1,813,069 + -0.5 1,813,070 - -0.7 1,813,070 - -1.1 1,813,070 - -0.3 1,813,070 - +1.7 1,813,070 - -0.3 1,813,102 + RPSI07_RS06760 0.11 +1.7 1,813,102 + RPSI07_RS06760 0.11 +2.2 1,813,102 + RPSI07_RS06760 0.11 +0.7 1,813,103 - RPSI07_RS06760 0.11 -0.4 1,813,103 - RPSI07_RS06760 0.11 -0.5 1,813,103 - RPSI07_RS06760 0.11 -0.5 1,813,123 + RPSI07_RS06760 0.13 +0.6 1,813,199 - RPSI07_RS06760 0.23 -1.1 1,813,199 - RPSI07_RS06760 0.23 +0.5 1,813,854 - -0.0 1,813,923 - RPSI07_RS06765 0.14 -0.4 1,813,923 - RPSI07_RS06765 0.14 -0.4 1,814,381 + RPSI07_RS06765 0.66 -0.2 1,814,381 + RPSI07_RS06765 0.66 +0.1 1,814,381 + RPSI07_RS06765 0.66 -0.8 1,814,381 + RPSI07_RS06765 0.66 -0.3 1,814,381 + RPSI07_RS06765 0.66 -0.4 1,814,381 + RPSI07_RS06765 0.66 +1.2 1,814,382 - RPSI07_RS06765 0.66 -0.3 1,814,382 - RPSI07_RS06765 0.66 +0.9 1,814,382 - RPSI07_RS06765 0.66 -0.1 1,814,382 - RPSI07_RS06765 0.66 +0.1 1,814,402 + RPSI07_RS06765 0.68 +0.6 1,814,402 + RPSI07_RS06765 0.68 +0.0 1,814,402 + RPSI07_RS06765 0.68 -0.9 1,814,403 - RPSI07_RS06765 0.68 +0.4 1,814,543 + RPSI07_RS06765 0.84 -1.3 1,814,543 + RPSI07_RS06765 0.84 +0.1 1,814,543 + RPSI07_RS06765 0.84 +0.6 1,814,543 + RPSI07_RS06765 0.84 -0.8 1,814,543 + RPSI07_RS06765 0.84 -0.2 1,814,543 + RPSI07_RS06765 0.84 +1.1 1,814,544 - RPSI07_RS06765 0.84 +0.5 1,814,544 - RPSI07_RS06765 0.84 +1.5 1,814,544 - RPSI07_RS06765 0.84 -0.9 1,814,549 + RPSI07_RS06765 0.84 +0.6 1,814,549 + RPSI07_RS06765 0.84 +0.1 1,814,549 + RPSI07_RS06765 0.84 -1.4 1,814,549 + RPSI07_RS06765 0.84 -0.6 1,814,549 + RPSI07_RS06765 0.84 -1.8 1,814,549 + RPSI07_RS06765 0.84 -0.2 1,814,549 + RPSI07_RS06765 0.84 +0.0 1,814,549 + RPSI07_RS06765 0.84 +0.5 1,814,549 + RPSI07_RS06765 0.84 -2.5 1,814,549 + RPSI07_RS06765 0.84 -1.9 1,814,549 + RPSI07_RS06765 0.84 +1.6 1,814,550 - RPSI07_RS06765 0.84 -0.2 1,814,550 - RPSI07_RS06765 0.84 -1.4 1,814,550 - RPSI07_RS06765 0.84 -0.1 1,814,550 - RPSI07_RS06765 0.84 +1.2 1,814,550 - RPSI07_RS06765 0.84 -0.8 1,814,550 - RPSI07_RS06765 0.84 -0.3
Or see this region's nucleotide sequence