Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_843 and PfGW456L13_844 are separated by 13 nucleotides PfGW456L13_844 and PfGW456L13_845 are separated by 4 nucleotides PfGW456L13_845 and PfGW456L13_846 are separated by 12 nucleotides PfGW456L13_846 and PfGW456L13_847 overlap by 18 nucleotides PfGW456L13_847 and PfGW456L13_848 overlap by 1 nucleotides
PfGW456L13_843 - Protein of unknown function DUF484, at 950,686 to 951,411
_843
PfGW456L13_844 - Diaminopimelate epimerase (EC 5.1.1.7), at 951,425 to 952,255
_844
PfGW456L13_845 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 952,260 to 953,507
_845
PfGW456L13_846 - Lipoprotein LppL-related protein, at 953,520 to 953,645
_846
PfGW456L13_847 - hypothetical protein, at 953,628 to 953,906
_847
PfGW456L13_848 - Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly, at 953,906 to 954,238
_848
Position (kb) 952
953
954 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 951.270 kb on + strand, within PfGW456L13_843 at 951.338 kb on - strand, within PfGW456L13_843 at 951.338 kb on - strand, within PfGW456L13_843 at 951.447 kb on + strand at 951.447 kb on + strand at 951.447 kb on + strand at 951.447 kb on + strand at 951.448 kb on - strand at 951.448 kb on - strand at 951.448 kb on - strand at 951.448 kb on - strand at 951.449 kb on + strand at 951.449 kb on + strand at 951.449 kb on + strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.537 kb on - strand, within PfGW456L13_844 at 951.835 kb on - strand, within PfGW456L13_844 at 952.240 kb on + strand at 952.240 kb on + strand at 952.240 kb on + strand at 952.241 kb on - strand at 952.262 kb on - strand at 952.288 kb on + strand at 952.288 kb on + strand at 952.288 kb on + strand at 952.288 kb on + strand at 952.288 kb on + strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.375 kb on + strand at 952.375 kb on + strand at 952.376 kb on - strand at 952.376 kb on - strand at 952.376 kb on - strand at 952.562 kb on - strand, within PfGW456L13_845 at 952.562 kb on - strand, within PfGW456L13_845 at 952.562 kb on - strand, within PfGW456L13_845 at 952.637 kb on - strand, within PfGW456L13_845 at 952.744 kb on + strand, within PfGW456L13_845 at 952.744 kb on + strand, within PfGW456L13_845 at 952.745 kb on - strand, within PfGW456L13_845 at 952.745 kb on - strand, within PfGW456L13_845 at 952.745 kb on - strand, within PfGW456L13_845 at 952.745 kb on - strand, within PfGW456L13_845 at 952.819 kb on + strand, within PfGW456L13_845 at 952.819 kb on + strand, within PfGW456L13_845 at 952.820 kb on - strand, within PfGW456L13_845 at 952.820 kb on - strand, within PfGW456L13_845 at 952.820 kb on - strand, within PfGW456L13_845 at 952.820 kb on - strand, within PfGW456L13_845 at 952.820 kb on - strand, within PfGW456L13_845 at 952.820 kb on - strand, within PfGW456L13_845 at 952.963 kb on + strand, within PfGW456L13_845 at 952.963 kb on + strand, within PfGW456L13_845 at 952.963 kb on + strand, within PfGW456L13_845 at 952.963 kb on + strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 953.026 kb on + strand, within PfGW456L13_845 at 953.339 kb on - strand, within PfGW456L13_845 at 953.377 kb on + strand, within PfGW456L13_845 at 953.378 kb on - strand, within PfGW456L13_845 at 953.387 kb on - strand at 953.387 kb on - strand at 953.387 kb on - strand at 953.387 kb on - strand at 953.419 kb on + strand at 953.419 kb on + strand at 953.420 kb on - strand at 953.420 kb on - strand at 953.420 kb on - strand at 953.420 kb on - strand at 953.420 kb on - strand at 953.420 kb on - strand at 953.429 kb on + strand at 953.492 kb on - strand at 953.495 kb on + strand at 953.496 kb on - strand at 953.496 kb on - strand at 953.496 kb on - strand at 953.518 kb on + strand at 953.518 kb on + strand at 953.518 kb on + strand at 953.519 kb on - strand at 953.519 kb on - strand at 953.519 kb on - strand at 953.522 kb on - strand at 953.522 kb on - strand at 953.522 kb on - strand at 953.527 kb on + strand at 953.527 kb on + strand at 953.528 kb on - strand at 953.528 kb on - strand at 953.528 kb on - strand at 953.720 kb on - strand, within PfGW456L13_847 at 953.720 kb on - strand, within PfGW456L13_847 at 953.720 kb on - strand, within PfGW456L13_847 at 953.734 kb on - strand, within PfGW456L13_847 at 953.735 kb on + strand, within PfGW456L13_847 at 953.759 kb on - strand, within PfGW456L13_847 at 953.830 kb on - strand, within PfGW456L13_847 at 953.858 kb on + strand, within PfGW456L13_847 at 953.859 kb on - strand, within PfGW456L13_847 at 954.122 kb on + strand, within PfGW456L13_848 at 954.190 kb on + strand, within PfGW456L13_848 at 954.190 kb on + strand, within PfGW456L13_848 at 954.191 kb on - strand, within PfGW456L13_848 at 954.191 kb on - strand, within PfGW456L13_848 at 954.283 kb on - strand at 954.283 kb on - strand at 954.380 kb on + strand at 954.380 kb on + strand at 954.381 kb on - strand at 954.381 kb on - strand at 954.381 kb on - strand at 954.413 kb on + strand at 954.413 kb on + strand at 954.414 kb on - strand at 954.460 kb on - strand at 954.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 951,270 + PfGW456L13_843 0.80 -2.8 951,338 - PfGW456L13_843 0.90 -0.6 951,338 - PfGW456L13_843 0.90 -2.5 951,447 + -1.6 951,447 + -2.2 951,447 + -0.6 951,447 + -1.6 951,448 - -0.6 951,448 - -0.6 951,448 - -0.9 951,448 - -0.8 951,449 + -2.0 951,449 + -1.9 951,449 + -1.1 951,450 - +0.2 951,450 - +0.3 951,450 - -0.7 951,450 - -2.7 951,450 - -2.9 951,450 - +0.1 951,450 - -0.9 951,450 - +0.0 951,450 - -0.4 951,450 - -0.8 951,450 - +0.4 951,450 - -0.3 951,450 - +0.2 951,450 - -0.6 951,450 - -1.0 951,450 - -1.9 951,537 - PfGW456L13_844 0.13 +0.5 951,835 - PfGW456L13_844 0.49 -2.1 952,240 + -2.3 952,240 + -1.0 952,240 + -0.6 952,241 - -0.4 952,262 - -0.3 952,288 + -1.3 952,288 + -1.7 952,288 + -1.9 952,288 + -0.3 952,288 + -2.0 952,289 - -3.1 952,289 - -3.2 952,289 - -3.8 952,289 - -2.7 952,289 - -2.6 952,289 - -3.7 952,289 - -2.7 952,289 - -3.5 952,289 - -3.7 952,289 - -3.6 952,289 - -2.8 952,289 - -2.6 952,375 + -2.9 952,375 + -1.7 952,376 - -3.7 952,376 - -3.1 952,376 - -2.7 952,562 - PfGW456L13_845 0.24 -2.9 952,562 - PfGW456L13_845 0.24 -3.2 952,562 - PfGW456L13_845 0.24 -3.6 952,637 - PfGW456L13_845 0.30 -4.2 952,744 + PfGW456L13_845 0.39 -2.2 952,744 + PfGW456L13_845 0.39 -3.1 952,745 - PfGW456L13_845 0.39 -2.5 952,745 - PfGW456L13_845 0.39 -3.7 952,745 - PfGW456L13_845 0.39 -2.5 952,745 - PfGW456L13_845 0.39 -4.2 952,819 + PfGW456L13_845 0.45 -0.3 952,819 + PfGW456L13_845 0.45 -1.5 952,820 - PfGW456L13_845 0.45 -3.3 952,820 - PfGW456L13_845 0.45 -2.0 952,820 - PfGW456L13_845 0.45 -2.7 952,820 - PfGW456L13_845 0.45 -3.5 952,820 - PfGW456L13_845 0.45 -3.8 952,820 - PfGW456L13_845 0.45 -3.2 952,963 + PfGW456L13_845 0.56 -2.8 952,963 + PfGW456L13_845 0.56 -3.6 952,963 + PfGW456L13_845 0.56 -2.2 952,963 + PfGW456L13_845 0.56 -2.0 952,964 - PfGW456L13_845 0.56 -2.0 952,964 - PfGW456L13_845 0.56 -3.8 952,964 - PfGW456L13_845 0.56 -3.4 952,964 - PfGW456L13_845 0.56 -2.9 952,964 - PfGW456L13_845 0.56 -4.3 952,964 - PfGW456L13_845 0.56 -2.5 952,964 - PfGW456L13_845 0.56 -3.0 952,964 - PfGW456L13_845 0.56 -3.9 953,026 + PfGW456L13_845 0.61 -2.8 953,339 - PfGW456L13_845 0.86 -3.7 953,377 + PfGW456L13_845 0.90 -2.0 953,378 - PfGW456L13_845 0.90 -2.2 953,387 - -2.0 953,387 - -2.5 953,387 - -3.7 953,387 - -2.9 953,419 + -2.0 953,419 + -2.7 953,420 - -0.9 953,420 - -3.2 953,420 - -2.3 953,420 - -3.4 953,420 - -2.9 953,420 - -3.2 953,429 + -1.5 953,492 - -3.2 953,495 + -2.9 953,496 - -3.3 953,496 - -2.8 953,496 - -0.9 953,518 + -1.9 953,518 + -2.7 953,518 + -1.3 953,519 - +1.4 953,519 - +0.9 953,519 - +0.4 953,522 - +1.5 953,522 - -0.1 953,522 - -1.2 953,527 + +0.1 953,527 + -1.9 953,528 - +1.3 953,528 - -0.4 953,528 - +0.4 953,720 - PfGW456L13_847 0.33 -0.1 953,720 - PfGW456L13_847 0.33 +1.2 953,720 - PfGW456L13_847 0.33 -1.2 953,734 - PfGW456L13_847 0.38 +0.6 953,735 + PfGW456L13_847 0.38 -1.1 953,759 - PfGW456L13_847 0.47 +1.0 953,830 - PfGW456L13_847 0.72 -0.6 953,858 + PfGW456L13_847 0.82 +0.5 953,859 - PfGW456L13_847 0.83 -0.1 954,122 + PfGW456L13_848 0.65 +0.5 954,190 + PfGW456L13_848 0.85 +0.3 954,190 + PfGW456L13_848 0.85 +0.4 954,191 - PfGW456L13_848 0.86 +0.9 954,191 - PfGW456L13_848 0.86 +0.7 954,283 - -2.4 954,283 - +1.1 954,380 + +0.3 954,380 + +0.4 954,381 - +0.6 954,381 - +0.8 954,381 - +0.6 954,413 + +0.6 954,413 + -0.4 954,414 - +0.3 954,460 - -4.4 954,460 - +0.8
Or see this region's nucleotide sequence