Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_653

Experiment: D-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_652 and PfGW456L13_653 are separated by 22 nucleotidesPfGW456L13_653 and PfGW456L13_654 are separated by 158 nucleotidesPfGW456L13_654 and PfGW456L13_655 are separated by 0 nucleotidesPfGW456L13_655 and PfGW456L13_656 are separated by 159 nucleotides PfGW456L13_652 - Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-), at 742,407 to 743,717 _652 PfGW456L13_653 - Trk system potassium uptake protein TrkA, at 743,740 to 745,116 _653 PfGW456L13_654 - Chaperone protein YscY (Yop proteins translocation protein Y), at 745,275 to 745,589 _654 PfGW456L13_655 - FIG00954045: hypothetical protein, at 745,590 to 745,829 _655 PfGW456L13_656 - Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-), at 745,989 to 746,876 _656 Position (kb) 743 744 745 746Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 742.763 kb on + strand, within PfGW456L13_652at 742.764 kb on - strand, within PfGW456L13_652at 742.916 kb on + strand, within PfGW456L13_652at 742.959 kb on + strand, within PfGW456L13_652at 742.960 kb on - strand, within PfGW456L13_652at 743.007 kb on + strand, within PfGW456L13_652at 743.007 kb on + strand, within PfGW456L13_652at 743.008 kb on - strand, within PfGW456L13_652at 743.227 kb on + strand, within PfGW456L13_652at 743.515 kb on - strand, within PfGW456L13_652at 743.515 kb on - strand, within PfGW456L13_652at 743.515 kb on - strand, within PfGW456L13_652at 743.676 kb on + strandat 743.676 kb on + strandat 743.676 kb on + strandat 743.677 kb on - strandat 743.677 kb on - strandat 743.677 kb on - strandat 743.679 kb on + strandat 743.680 kb on - strandat 743.680 kb on - strandat 743.814 kb on + strandat 743.814 kb on + strandat 743.815 kb on - strandat 743.815 kb on - strandat 743.815 kb on - strandat 743.815 kb on - strandat 743.817 kb on + strandat 743.817 kb on + strandat 743.817 kb on + strandat 743.817 kb on + strandat 743.817 kb on + strandat 743.817 kb on + strandat 743.818 kb on - strandat 743.818 kb on - strandat 743.818 kb on - strandat 743.882 kb on + strand, within PfGW456L13_653at 744.049 kb on + strand, within PfGW456L13_653at 744.133 kb on + strand, within PfGW456L13_653at 744.133 kb on + strand, within PfGW456L13_653at 744.134 kb on - strand, within PfGW456L13_653at 744.134 kb on - strand, within PfGW456L13_653at 744.134 kb on - strand, within PfGW456L13_653at 744.134 kb on - strand, within PfGW456L13_653at 744.220 kb on + strand, within PfGW456L13_653at 744.220 kb on + strand, within PfGW456L13_653at 744.220 kb on + strand, within PfGW456L13_653at 744.365 kb on + strand, within PfGW456L13_653at 744.365 kb on + strand, within PfGW456L13_653at 744.366 kb on - strand, within PfGW456L13_653at 744.433 kb on + strand, within PfGW456L13_653at 744.433 kb on + strand, within PfGW456L13_653at 744.433 kb on + strand, within PfGW456L13_653at 744.434 kb on - strand, within PfGW456L13_653at 744.434 kb on - strand, within PfGW456L13_653at 744.435 kb on + strand, within PfGW456L13_653at 744.436 kb on - strand, within PfGW456L13_653at 744.534 kb on - strand, within PfGW456L13_653at 744.534 kb on - strand, within PfGW456L13_653at 744.672 kb on + strand, within PfGW456L13_653at 744.742 kb on + strand, within PfGW456L13_653at 744.742 kb on + strand, within PfGW456L13_653at 744.742 kb on + strand, within PfGW456L13_653at 744.742 kb on + strand, within PfGW456L13_653at 744.743 kb on - strand, within PfGW456L13_653at 744.743 kb on - strand, within PfGW456L13_653at 744.978 kb on + strand, within PfGW456L13_653at 745.068 kb on + strandat 745.068 kb on + strandat 745.080 kb on - strandat 745.080 kb on - strandat 745.080 kb on - strandat 745.080 kb on - strandat 745.080 kb on - strandat 745.132 kb on + strandat 745.135 kb on + strandat 745.170 kb on + strandat 745.170 kb on + strandat 745.230 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.350 kb on + strand, within PfGW456L13_654at 745.351 kb on - strand, within PfGW456L13_654at 745.351 kb on - strand, within PfGW456L13_654at 745.419 kb on + strand, within PfGW456L13_654at 745.420 kb on - strand, within PfGW456L13_654at 745.438 kb on + strand, within PfGW456L13_654at 745.597 kb on + strandat 745.598 kb on - strandat 745.665 kb on + strand, within PfGW456L13_655at 745.665 kb on + strand, within PfGW456L13_655at 745.666 kb on - strand, within PfGW456L13_655at 745.666 kb on - strand, within PfGW456L13_655at 745.666 kb on - strand, within PfGW456L13_655at 745.685 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.859 kb on + strandat 745.859 kb on + strandat 745.860 kb on - strandat 745.993 kb on + strandat 746.047 kb on + strandat 746.047 kb on + strandat 746.048 kb on - strandat 746.048 kb on - strandat 746.072 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
remove
742,763 + PfGW456L13_652 0.27 -2.5
742,764 - PfGW456L13_652 0.27 -0.3
742,916 + PfGW456L13_652 0.39 +1.6
742,959 + PfGW456L13_652 0.42 +0.1
742,960 - PfGW456L13_652 0.42 -1.8
743,007 + PfGW456L13_652 0.46 +0.0
743,007 + PfGW456L13_652 0.46 -2.1
743,008 - PfGW456L13_652 0.46 -1.5
743,227 + PfGW456L13_652 0.63 -2.5
743,515 - PfGW456L13_652 0.85 -0.5
743,515 - PfGW456L13_652 0.85 -1.9
743,515 - PfGW456L13_652 0.85 -0.9
743,676 + +0.3
743,676 + -0.3
743,676 + -1.0
743,677 - -1.1
743,677 - -0.2
743,677 - -2.4
743,679 + -0.2
743,680 - -0.3
743,680 - +0.8
743,814 + +0.9
743,814 + +0.7
743,815 - -1.7
743,815 - -0.3
743,815 - -1.2
743,815 - +0.2
743,817 + +0.0
743,817 + -0.4
743,817 + +0.8
743,817 + -0.6
743,817 + -3.3
743,817 + +0.5
743,818 - +0.1
743,818 - -2.0
743,818 - -0.3
743,882 + PfGW456L13_653 0.10 -0.1
744,049 + PfGW456L13_653 0.22 -0.7
744,133 + PfGW456L13_653 0.29 +0.4
744,133 + PfGW456L13_653 0.29 +0.3
744,134 - PfGW456L13_653 0.29 +0.8
744,134 - PfGW456L13_653 0.29 +0.2
744,134 - PfGW456L13_653 0.29 -1.5
744,134 - PfGW456L13_653 0.29 -0.6
744,220 + PfGW456L13_653 0.35 -2.6
744,220 + PfGW456L13_653 0.35 +0.6
744,220 + PfGW456L13_653 0.35 +0.6
744,365 + PfGW456L13_653 0.45 -2.2
744,365 + PfGW456L13_653 0.45 -1.7
744,366 - PfGW456L13_653 0.45 -2.4
744,433 + PfGW456L13_653 0.50 +1.1
744,433 + PfGW456L13_653 0.50 -2.6
744,433 + PfGW456L13_653 0.50 -0.2
744,434 - PfGW456L13_653 0.50 +0.5
744,434 - PfGW456L13_653 0.50 +0.3
744,435 + PfGW456L13_653 0.50 -0.4
744,436 - PfGW456L13_653 0.51 +1.0
744,534 - PfGW456L13_653 0.58 +0.3
744,534 - PfGW456L13_653 0.58 -0.4
744,672 + PfGW456L13_653 0.68 +0.1
744,742 + PfGW456L13_653 0.73 +0.5
744,742 + PfGW456L13_653 0.73 +0.6
744,742 + PfGW456L13_653 0.73 +0.4
744,742 + PfGW456L13_653 0.73 -0.3
744,743 - PfGW456L13_653 0.73 +0.6
744,743 - PfGW456L13_653 0.73 +0.2
744,978 + PfGW456L13_653 0.90 -0.4
745,068 + +0.4
745,068 + -0.7
745,080 - +0.5
745,080 - -0.4
745,080 - +0.1
745,080 - +0.0
745,080 - -0.1
745,132 + -0.0
745,135 + +0.6
745,170 + -0.7
745,170 + +0.2
745,230 + +0.9
745,235 + -0.9
745,235 + +0.8
745,235 + -0.4
745,235 + +0.4
745,235 + +0.9
745,235 + +0.6
745,236 - +0.3
745,236 - +0.8
745,236 - -0.7
745,236 - -1.9
745,236 - +0.5
745,236 - -1.1
745,350 + PfGW456L13_654 0.24 +0.5
745,351 - PfGW456L13_654 0.24 +2.1
745,351 - PfGW456L13_654 0.24 -0.0
745,419 + PfGW456L13_654 0.46 +1.3
745,420 - PfGW456L13_654 0.46 +0.7
745,438 + PfGW456L13_654 0.52 +0.3
745,597 + -0.3
745,598 - +0.5
745,665 + PfGW456L13_655 0.31 -1.3
745,665 + PfGW456L13_655 0.31 -0.5
745,666 - PfGW456L13_655 0.32 -0.5
745,666 - PfGW456L13_655 0.32 -0.0
745,666 - PfGW456L13_655 0.32 -0.2
745,685 - PfGW456L13_655 0.40 +0.8
745,733 - PfGW456L13_655 0.60 +0.6
745,733 - PfGW456L13_655 0.60 +0.4
745,733 - PfGW456L13_655 0.60 +0.4
745,733 - PfGW456L13_655 0.60 -0.1
745,733 - PfGW456L13_655 0.60 +1.0
745,859 + +0.0
745,859 + -1.3
745,860 - -0.3
745,993 + -2.4
746,047 + -2.5
746,047 + -2.4
746,048 - -2.7
746,048 - -2.9
746,072 - -1.9

Or see this region's nucleotide sequence