Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4733

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4731 and PfGW456L13_4732 are separated by 93 nucleotidesPfGW456L13_4732 and PfGW456L13_4733 are separated by 112 nucleotidesPfGW456L13_4733 and PfGW456L13_4734 are separated by 93 nucleotidesPfGW456L13_4734 and PfGW456L13_4735 are separated by 22 nucleotides PfGW456L13_4731 - RND efflux membrane fusion protein, at 5,274,950 to 5,276,050 _4731 PfGW456L13_4732 - Transcriptional regulator, TetR family, at 5,276,144 to 5,276,782 _4732 PfGW456L13_4733 - SAM-dependent methyltransferase (EC 2.1.1.-), at 5,276,895 to 5,277,677 _4733 PfGW456L13_4734 - Periplasmic protein TonB, links inner and outer membranes, at 5,277,771 to 5,278,391 _4734 PfGW456L13_4735 - Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23), at 5,278,414 to 5,279,235 _4735 Position (kb) 5276 5277 5278Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5275.905 kb on + strand, within PfGW456L13_4731at 5276.000 kb on + strandat 5276.040 kb on + strandat 5276.083 kb on + strandat 5276.083 kb on + strandat 5276.084 kb on - strandat 5276.088 kb on - strandat 5276.088 kb on - strandat 5276.088 kb on - strandat 5276.090 kb on - strandat 5276.099 kb on + strandat 5276.099 kb on + strandat 5276.100 kb on - strandat 5276.100 kb on - strandat 5276.100 kb on - strandat 5276.100 kb on - strandat 5276.104 kb on + strandat 5276.133 kb on + strandat 5276.144 kb on - strandat 5276.144 kb on - strandat 5276.242 kb on + strand, within PfGW456L13_4732at 5276.257 kb on + strand, within PfGW456L13_4732at 5276.257 kb on + strand, within PfGW456L13_4732at 5276.309 kb on + strand, within PfGW456L13_4732at 5276.309 kb on + strand, within PfGW456L13_4732at 5276.309 kb on + strand, within PfGW456L13_4732at 5276.310 kb on - strand, within PfGW456L13_4732at 5276.310 kb on - strand, within PfGW456L13_4732at 5276.310 kb on - strand, within PfGW456L13_4732at 5276.310 kb on - strand, within PfGW456L13_4732at 5276.310 kb on - strand, within PfGW456L13_4732at 5276.311 kb on + strand, within PfGW456L13_4732at 5276.690 kb on + strand, within PfGW456L13_4732at 5276.690 kb on + strand, within PfGW456L13_4732at 5276.690 kb on + strand, within PfGW456L13_4732at 5276.691 kb on - strand, within PfGW456L13_4732at 5276.691 kb on - strand, within PfGW456L13_4732at 5276.758 kb on + strandat 5276.758 kb on + strandat 5276.759 kb on - strandat 5276.759 kb on - strandat 5276.920 kb on + strandat 5276.920 kb on + strandat 5276.920 kb on + strandat 5276.921 kb on - strandat 5277.148 kb on + strand, within PfGW456L13_4733at 5277.149 kb on - strand, within PfGW456L13_4733at 5277.570 kb on + strand, within PfGW456L13_4733at 5277.571 kb on - strand, within PfGW456L13_4733at 5277.571 kb on - strand, within PfGW456L13_4733at 5277.571 kb on - strand, within PfGW456L13_4733at 5277.731 kb on + strandat 5277.760 kb on + strandat 5277.822 kb on + strandat 5277.822 kb on + strandat 5277.822 kb on + strandat 5277.822 kb on + strandat 5277.822 kb on + strandat 5277.822 kb on + strandat 5277.822 kb on + strandat 5277.823 kb on - strandat 5277.823 kb on - strandat 5277.916 kb on + strand, within PfGW456L13_4734at 5277.916 kb on + strand, within PfGW456L13_4734at 5277.917 kb on - strand, within PfGW456L13_4734at 5278.033 kb on + strand, within PfGW456L13_4734at 5278.033 kb on + strand, within PfGW456L13_4734at 5278.033 kb on + strand, within PfGW456L13_4734at 5278.033 kb on + strand, within PfGW456L13_4734at 5278.034 kb on - strand, within PfGW456L13_4734at 5278.034 kb on - strand, within PfGW456L13_4734at 5278.034 kb on - strand, within PfGW456L13_4734at 5278.034 kb on - strand, within PfGW456L13_4734at 5278.034 kb on - strand, within PfGW456L13_4734at 5278.180 kb on + strand, within PfGW456L13_4734at 5278.181 kb on - strand, within PfGW456L13_4734at 5278.181 kb on - strand, within PfGW456L13_4734at 5278.181 kb on - strand, within PfGW456L13_4734at 5278.445 kb on + strandat 5278.520 kb on + strand, within PfGW456L13_4735at 5278.521 kb on - strand, within PfGW456L13_4735at 5278.554 kb on + strand, within PfGW456L13_4735at 5278.554 kb on + strand, within PfGW456L13_4735at 5278.555 kb on - strand, within PfGW456L13_4735at 5278.555 kb on - strand, within PfGW456L13_4735

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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5,275,905 + PfGW456L13_4731 0.87 +0.1
5,276,000 + +0.9
5,276,040 + -1.1
5,276,083 + +0.1
5,276,083 + -0.8
5,276,084 - +0.4
5,276,088 - -1.2
5,276,088 - -1.0
5,276,088 - -0.5
5,276,090 - -1.4
5,276,099 + -2.7
5,276,099 + -1.2
5,276,100 - +1.1
5,276,100 - -0.2
5,276,100 - +0.1
5,276,100 - +1.1
5,276,104 + +1.6
5,276,133 + -0.3
5,276,144 - -0.4
5,276,144 - +0.3
5,276,242 + PfGW456L13_4732 0.15 +0.3
5,276,257 + PfGW456L13_4732 0.18 -1.0
5,276,257 + PfGW456L13_4732 0.18 -1.6
5,276,309 + PfGW456L13_4732 0.26 +0.1
5,276,309 + PfGW456L13_4732 0.26 +0.9
5,276,309 + PfGW456L13_4732 0.26 +0.9
5,276,310 - PfGW456L13_4732 0.26 +0.3
5,276,310 - PfGW456L13_4732 0.26 -0.5
5,276,310 - PfGW456L13_4732 0.26 +0.8
5,276,310 - PfGW456L13_4732 0.26 -0.3
5,276,310 - PfGW456L13_4732 0.26 -2.0
5,276,311 + PfGW456L13_4732 0.26 +0.1
5,276,690 + PfGW456L13_4732 0.85 +0.3
5,276,690 + PfGW456L13_4732 0.85 +0.4
5,276,690 + PfGW456L13_4732 0.85 +2.0
5,276,691 - PfGW456L13_4732 0.86 +0.9
5,276,691 - PfGW456L13_4732 0.86 +0.7
5,276,758 + -0.5
5,276,758 + -0.2
5,276,759 - +0.8
5,276,759 - -1.7
5,276,920 + -1.5
5,276,920 + -1.3
5,276,920 + +0.3
5,276,921 - -1.5
5,277,148 + PfGW456L13_4733 0.32 -2.4
5,277,149 - PfGW456L13_4733 0.32 -0.1
5,277,570 + PfGW456L13_4733 0.86 -0.7
5,277,571 - PfGW456L13_4733 0.86 -0.5
5,277,571 - PfGW456L13_4733 0.86 -0.6
5,277,571 - PfGW456L13_4733 0.86 -3.7
5,277,731 + +0.8
5,277,760 + -0.5
5,277,822 + +0.8
5,277,822 + +0.2
5,277,822 + +0.2
5,277,822 + -2.3
5,277,822 + -0.2
5,277,822 + +1.3
5,277,822 + -0.2
5,277,823 - +0.1
5,277,823 - -0.1
5,277,916 + PfGW456L13_4734 0.23 -0.3
5,277,916 + PfGW456L13_4734 0.23 -0.9
5,277,917 - PfGW456L13_4734 0.24 +0.0
5,278,033 + PfGW456L13_4734 0.42 -0.1
5,278,033 + PfGW456L13_4734 0.42 +0.2
5,278,033 + PfGW456L13_4734 0.42 +0.6
5,278,033 + PfGW456L13_4734 0.42 +0.2
5,278,034 - PfGW456L13_4734 0.42 +1.0
5,278,034 - PfGW456L13_4734 0.42 +2.1
5,278,034 - PfGW456L13_4734 0.42 +1.1
5,278,034 - PfGW456L13_4734 0.42 -1.2
5,278,034 - PfGW456L13_4734 0.42 +0.5
5,278,180 + PfGW456L13_4734 0.66 -0.3
5,278,181 - PfGW456L13_4734 0.66 -0.1
5,278,181 - PfGW456L13_4734 0.66 -0.1
5,278,181 - PfGW456L13_4734 0.66 +0.5
5,278,445 + -0.7
5,278,520 + PfGW456L13_4735 0.13 -0.3
5,278,521 - PfGW456L13_4735 0.13 +0.2
5,278,554 + PfGW456L13_4735 0.17 -0.6
5,278,554 + PfGW456L13_4735 0.17 +1.2
5,278,555 - PfGW456L13_4735 0.17 +0.6
5,278,555 - PfGW456L13_4735 0.17 +0.1

Or see this region's nucleotide sequence