Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4319

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4318 and PfGW456L13_4319 overlap by 4 nucleotidesPfGW456L13_4319 and PfGW456L13_4320 are separated by 614 nucleotides PfGW456L13_4318 - FIG00955434: hypothetical protein, at 4,831,070 to 4,832,644 _4318 PfGW456L13_4319 - FlhB domain protein, at 4,832,641 to 4,832,970 _4319 PfGW456L13_4320 - FIG00953562: hypothetical protein, at 4,833,585 to 4,833,977 _4320 Position (kb) 4832 4833Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4831.717 kb on + strand, within PfGW456L13_4318at 4831.717 kb on + strand, within PfGW456L13_4318at 4831.718 kb on - strand, within PfGW456L13_4318at 4832.008 kb on + strand, within PfGW456L13_4318at 4832.009 kb on - strand, within PfGW456L13_4318at 4832.116 kb on - strand, within PfGW456L13_4318at 4832.116 kb on - strand, within PfGW456L13_4318at 4832.116 kb on - strand, within PfGW456L13_4318at 4832.489 kb on + strandat 4832.490 kb on - strandat 4832.490 kb on - strandat 4832.848 kb on + strand, within PfGW456L13_4319at 4832.848 kb on + strand, within PfGW456L13_4319at 4832.848 kb on + strand, within PfGW456L13_4319at 4832.849 kb on - strand, within PfGW456L13_4319at 4832.849 kb on - strand, within PfGW456L13_4319at 4832.849 kb on - strand, within PfGW456L13_4319at 4832.943 kb on + strandat 4832.943 kb on + strandat 4832.944 kb on - strandat 4832.944 kb on - strandat 4832.966 kb on - strandat 4832.966 kb on - strandat 4832.980 kb on + strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.048 kb on - strandat 4833.141 kb on + strandat 4833.141 kb on + strandat 4833.142 kb on - strandat 4833.193 kb on - strandat 4833.326 kb on + strandat 4833.326 kb on + strandat 4833.326 kb on + strandat 4833.326 kb on + strandat 4833.326 kb on + strandat 4833.326 kb on + strandat 4833.326 kb on + strandat 4833.326 kb on + strandat 4833.327 kb on - strandat 4833.327 kb on - strandat 4833.327 kb on - strandat 4833.327 kb on - strandat 4833.327 kb on - strandat 4833.327 kb on - strandat 4833.327 kb on - strandat 4833.337 kb on + strandat 4833.337 kb on + strandat 4833.338 kb on - strandat 4833.338 kb on - strandat 4833.338 kb on - strandat 4833.338 kb on - strandat 4833.364 kb on + strandat 4833.364 kb on + strandat 4833.364 kb on + strandat 4833.364 kb on + strandat 4833.364 kb on + strandat 4833.364 kb on + strandat 4833.365 kb on - strandat 4833.365 kb on - strandat 4833.365 kb on - strandat 4833.365 kb on - strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.453 kb on + strandat 4833.454 kb on - strandat 4833.471 kb on + strandat 4833.471 kb on + strandat 4833.471 kb on + strandat 4833.471 kb on + strandat 4833.471 kb on + strandat 4833.471 kb on + strandat 4833.471 kb on + strandat 4833.471 kb on + strandat 4833.471 kb on + strandat 4833.509 kb on + strandat 4833.509 kb on + strandat 4833.509 kb on + strandat 4833.510 kb on - strandat 4833.510 kb on - strandat 4833.510 kb on - strandat 4833.510 kb on - strandat 4833.510 kb on - strandat 4833.577 kb on - strandat 4833.811 kb on + strand, within PfGW456L13_4320at 4833.812 kb on - strand, within PfGW456L13_4320at 4833.907 kb on + strand, within PfGW456L13_4320at 4833.907 kb on + strand, within PfGW456L13_4320at 4833.907 kb on + strand, within PfGW456L13_4320at 4833.908 kb on - strand, within PfGW456L13_4320at 4833.908 kb on - strand, within PfGW456L13_4320at 4833.908 kb on - strand, within PfGW456L13_4320at 4833.908 kb on - strand, within PfGW456L13_4320

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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4,831,717 + PfGW456L13_4318 0.41 -0.6
4,831,717 + PfGW456L13_4318 0.41 -1.3
4,831,718 - PfGW456L13_4318 0.41 +0.1
4,832,008 + PfGW456L13_4318 0.60 +1.2
4,832,009 - PfGW456L13_4318 0.60 +0.6
4,832,116 - PfGW456L13_4318 0.66 +0.0
4,832,116 - PfGW456L13_4318 0.66 -0.1
4,832,116 - PfGW456L13_4318 0.66 +1.0
4,832,489 + +0.9
4,832,490 - +1.1
4,832,490 - +0.7
4,832,848 + PfGW456L13_4319 0.63 +0.5
4,832,848 + PfGW456L13_4319 0.63 -0.4
4,832,848 + PfGW456L13_4319 0.63 -1.7
4,832,849 - PfGW456L13_4319 0.63 -0.7
4,832,849 - PfGW456L13_4319 0.63 -2.1
4,832,849 - PfGW456L13_4319 0.63 -0.5
4,832,943 + -0.5
4,832,943 + -0.4
4,832,944 - -0.7
4,832,944 - -0.2
4,832,966 - -0.7
4,832,966 - -0.3
4,832,980 + +0.6
4,833,047 + -0.7
4,833,047 + +0.8
4,833,047 + +0.7
4,833,048 - -0.1
4,833,141 + -0.1
4,833,141 + +0.1
4,833,142 - -1.0
4,833,193 - -0.5
4,833,326 + -0.6
4,833,326 + +0.3
4,833,326 + +0.0
4,833,326 + +1.8
4,833,326 + +0.0
4,833,326 + +0.9
4,833,326 + -0.3
4,833,326 + +0.6
4,833,327 - -0.1
4,833,327 - -1.0
4,833,327 - -1.2
4,833,327 - +0.8
4,833,327 - -0.7
4,833,327 - +0.2
4,833,327 - -1.2
4,833,337 + -0.5
4,833,337 + -3.4
4,833,338 - -2.4
4,833,338 - +0.8
4,833,338 - +0.5
4,833,338 - +0.7
4,833,364 + -1.1
4,833,364 + +0.2
4,833,364 + +0.9
4,833,364 + +0.2
4,833,364 + +1.0
4,833,364 + -0.5
4,833,365 - +0.5
4,833,365 - +0.5
4,833,365 - -0.0
4,833,365 - -1.3
4,833,453 + -2.2
4,833,453 + -0.1
4,833,453 + +1.1
4,833,453 + -0.8
4,833,453 + -0.0
4,833,453 + +0.1
4,833,453 + +0.4
4,833,453 + +0.4
4,833,453 + +0.5
4,833,453 + +0.2
4,833,453 + +0.9
4,833,453 + +0.5
4,833,453 + -0.5
4,833,453 + -0.6
4,833,453 + -0.6
4,833,453 + +0.2
4,833,453 + -0.5
4,833,454 - +0.6
4,833,471 + +0.4
4,833,471 + +0.8
4,833,471 + -0.1
4,833,471 + -0.8
4,833,471 + +0.5
4,833,471 + -0.1
4,833,471 + +0.1
4,833,471 + -0.7
4,833,471 + +0.4
4,833,509 + -0.1
4,833,509 + +0.5
4,833,509 + -0.5
4,833,510 - +1.6
4,833,510 - +0.2
4,833,510 - -0.3
4,833,510 - -1.1
4,833,510 - +0.7
4,833,577 - -1.1
4,833,811 + PfGW456L13_4320 0.58 -0.8
4,833,812 - PfGW456L13_4320 0.58 -0.7
4,833,907 + PfGW456L13_4320 0.82 -0.6
4,833,907 + PfGW456L13_4320 0.82 +1.4
4,833,907 + PfGW456L13_4320 0.82 -2.6
4,833,908 - PfGW456L13_4320 0.82 -1.6
4,833,908 - PfGW456L13_4320 0.82 -0.1
4,833,908 - PfGW456L13_4320 0.82 -0.4
4,833,908 - PfGW456L13_4320 0.82 +0.4

Or see this region's nucleotide sequence