Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4144

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4143 and PfGW456L13_4144 are separated by 159 nucleotidesPfGW456L13_4144 and PfGW456L13_4145 are separated by 100 nucleotidesPfGW456L13_4145 and PfGW456L13_4146 are separated by 95 nucleotides PfGW456L13_4143 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 4,659,326 to 4,660,048 _4143 PfGW456L13_4144 - Magnesium and cobalt transport protein CorA, at 4,660,208 to 4,661,179 _4144 PfGW456L13_4145 - Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 4,661,280 to 4,662,002 _4145 PfGW456L13_4146 - Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 4,662,098 to 4,664,242 _4146 Position (kb) 4660 4661 4662Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4659.289 kb on + strandat 4659.289 kb on + strandat 4659.289 kb on + strandat 4659.290 kb on - strandat 4659.290 kb on - strandat 4659.323 kb on + strandat 4659.323 kb on + strandat 4659.323 kb on + strandat 4659.324 kb on - strandat 4659.324 kb on - strandat 4659.343 kb on + strandat 4659.344 kb on - strandat 4659.449 kb on + strand, within PfGW456L13_4143at 4659.449 kb on + strand, within PfGW456L13_4143at 4659.449 kb on + strand, within PfGW456L13_4143at 4659.512 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.595 kb on + strand, within PfGW456L13_4143at 4659.596 kb on - strand, within PfGW456L13_4143at 4659.872 kb on + strand, within PfGW456L13_4143at 4659.873 kb on - strand, within PfGW456L13_4143at 4660.214 kb on - strandat 4660.235 kb on + strandat 4660.235 kb on + strandat 4660.235 kb on + strandat 4660.247 kb on - strandat 4660.261 kb on + strandat 4660.349 kb on + strand, within PfGW456L13_4144at 4660.349 kb on + strand, within PfGW456L13_4144at 4660.349 kb on + strand, within PfGW456L13_4144at 4660.350 kb on - strand, within PfGW456L13_4144at 4660.350 kb on - strand, within PfGW456L13_4144at 4660.350 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.508 kb on - strand, within PfGW456L13_4144at 4660.508 kb on - strand, within PfGW456L13_4144at 4660.508 kb on - strand, within PfGW456L13_4144at 4660.508 kb on - strand, within PfGW456L13_4144at 4660.526 kb on + strand, within PfGW456L13_4144at 4660.527 kb on - strand, within PfGW456L13_4144at 4660.527 kb on - strand, within PfGW456L13_4144at 4660.535 kb on - strand, within PfGW456L13_4144at 4660.626 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.661 kb on + strand, within PfGW456L13_4144at 4660.661 kb on + strand, within PfGW456L13_4144at 4660.739 kb on + strand, within PfGW456L13_4144at 4660.740 kb on - strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.756 kb on - strand, within PfGW456L13_4144at 4660.756 kb on - strand, within PfGW456L13_4144at 4660.756 kb on - strand, within PfGW456L13_4144at 4660.756 kb on - strand, within PfGW456L13_4144at 4660.793 kb on + strand, within PfGW456L13_4144at 4660.793 kb on + strand, within PfGW456L13_4144at 4660.793 kb on + strand, within PfGW456L13_4144at 4660.794 kb on - strand, within PfGW456L13_4144at 4660.794 kb on - strand, within PfGW456L13_4144at 4660.872 kb on - strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4661.054 kb on + strand, within PfGW456L13_4144at 4661.054 kb on + strand, within PfGW456L13_4144at 4661.055 kb on - strand, within PfGW456L13_4144at 4661.055 kb on - strand, within PfGW456L13_4144at 4661.055 kb on - strand, within PfGW456L13_4144at 4661.102 kb on + strandat 4661.122 kb on + strandat 4661.123 kb on - strandat 4661.125 kb on + strandat 4661.125 kb on + strandat 4661.265 kb on + strandat 4661.272 kb on + strandat 4661.272 kb on + strandat 4661.272 kb on + strandat 4661.273 kb on - strandat 4661.273 kb on - strandat 4661.367 kb on - strand, within PfGW456L13_4145at 4661.377 kb on + strand, within PfGW456L13_4145at 4661.378 kb on - strand, within PfGW456L13_4145at 4661.429 kb on - strand, within PfGW456L13_4145at 4661.429 kb on - strand, within PfGW456L13_4145at 4661.485 kb on + strand, within PfGW456L13_4145at 4661.486 kb on - strand, within PfGW456L13_4145at 4661.486 kb on - strand, within PfGW456L13_4145at 4661.572 kb on - strand, within PfGW456L13_4145at 4661.626 kb on + strand, within PfGW456L13_4145at 4661.626 kb on + strand, within PfGW456L13_4145at 4661.627 kb on - strand, within PfGW456L13_4145at 4661.740 kb on + strand, within PfGW456L13_4145at 4661.741 kb on - strand, within PfGW456L13_4145at 4661.755 kb on + strand, within PfGW456L13_4145at 4661.756 kb on - strand, within PfGW456L13_4145at 4661.821 kb on + strand, within PfGW456L13_4145at 4661.852 kb on - strand, within PfGW456L13_4145at 4661.872 kb on + strand, within PfGW456L13_4145at 4661.872 kb on + strand, within PfGW456L13_4145at 4661.873 kb on - strand, within PfGW456L13_4145at 4662.010 kb on - strandat 4662.029 kb on + strandat 4662.030 kb on - strandat 4662.030 kb on - strandat 4662.099 kb on + strandat 4662.100 kb on - strandat 4662.100 kb on - strandat 4662.162 kb on + strandat 4662.162 kb on + strandat 4662.163 kb on - strandat 4662.163 kb on - strandat 4662.163 kb on - strandat 4662.163 kb on - strandat 4662.177 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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4,659,289 + -2.2
4,659,289 + -1.2
4,659,289 + +0.1
4,659,290 - +0.6
4,659,290 - +0.0
4,659,323 + +0.1
4,659,323 + -1.3
4,659,323 + +0.4
4,659,324 - +1.0
4,659,324 - +0.5
4,659,343 + -1.1
4,659,344 - +3.0
4,659,449 + PfGW456L13_4143 0.17 +0.1
4,659,449 + PfGW456L13_4143 0.17 +0.0
4,659,449 + PfGW456L13_4143 0.17 -0.0
4,659,512 + PfGW456L13_4143 0.26 -0.1
4,659,557 + PfGW456L13_4143 0.32 +0.6
4,659,557 + PfGW456L13_4143 0.32 -1.3
4,659,557 + PfGW456L13_4143 0.32 -0.2
4,659,557 + PfGW456L13_4143 0.32 +0.7
4,659,557 + PfGW456L13_4143 0.32 -0.2
4,659,557 + PfGW456L13_4143 0.32 +0.7
4,659,557 + PfGW456L13_4143 0.32 +1.2
4,659,557 + PfGW456L13_4143 0.32 +0.1
4,659,557 + PfGW456L13_4143 0.32 -0.3
4,659,557 + PfGW456L13_4143 0.32 -0.3
4,659,557 + PfGW456L13_4143 0.32 -0.2
4,659,558 - PfGW456L13_4143 0.32 +0.8
4,659,558 - PfGW456L13_4143 0.32 -0.7
4,659,558 - PfGW456L13_4143 0.32 +0.8
4,659,558 - PfGW456L13_4143 0.32 +0.6
4,659,558 - PfGW456L13_4143 0.32 -1.3
4,659,558 - PfGW456L13_4143 0.32 +1.4
4,659,558 - PfGW456L13_4143 0.32 +0.3
4,659,558 - PfGW456L13_4143 0.32 +0.7
4,659,595 + PfGW456L13_4143 0.37 +0.7
4,659,596 - PfGW456L13_4143 0.37 +0.0
4,659,872 + PfGW456L13_4143 0.76 +1.8
4,659,873 - PfGW456L13_4143 0.76 +0.3
4,660,214 - +0.4
4,660,235 + -0.8
4,660,235 + +0.7
4,660,235 + -0.8
4,660,247 - +0.8
4,660,261 + -0.2
4,660,349 + PfGW456L13_4144 0.15 -0.1
4,660,349 + PfGW456L13_4144 0.15 +0.3
4,660,349 + PfGW456L13_4144 0.15 -0.1
4,660,350 - PfGW456L13_4144 0.15 -0.8
4,660,350 - PfGW456L13_4144 0.15 +0.6
4,660,350 - PfGW456L13_4144 0.15 -0.8
4,660,461 - PfGW456L13_4144 0.26 +0.7
4,660,461 - PfGW456L13_4144 0.26 +0.5
4,660,461 - PfGW456L13_4144 0.26 +2.3
4,660,461 - PfGW456L13_4144 0.26 -0.3
4,660,461 - PfGW456L13_4144 0.26 -0.7
4,660,508 - PfGW456L13_4144 0.31 +0.1
4,660,508 - PfGW456L13_4144 0.31 +0.7
4,660,508 - PfGW456L13_4144 0.31 +0.0
4,660,508 - PfGW456L13_4144 0.31 -1.0
4,660,526 + PfGW456L13_4144 0.33 +0.1
4,660,527 - PfGW456L13_4144 0.33 -0.2
4,660,527 - PfGW456L13_4144 0.33 +0.0
4,660,535 - PfGW456L13_4144 0.34 +0.6
4,660,626 + PfGW456L13_4144 0.43 +0.2
4,660,631 + PfGW456L13_4144 0.44 -0.1
4,660,631 + PfGW456L13_4144 0.44 +0.6
4,660,631 + PfGW456L13_4144 0.44 +0.6
4,660,631 + PfGW456L13_4144 0.44 -0.2
4,660,631 + PfGW456L13_4144 0.44 -1.9
4,660,631 + PfGW456L13_4144 0.44 -1.0
4,660,631 + PfGW456L13_4144 0.44 +0.4
4,660,632 - PfGW456L13_4144 0.44 -1.8
4,660,632 - PfGW456L13_4144 0.44 +0.9
4,660,632 - PfGW456L13_4144 0.44 -0.3
4,660,632 - PfGW456L13_4144 0.44 +0.7
4,660,632 - PfGW456L13_4144 0.44 +2.3
4,660,632 - PfGW456L13_4144 0.44 +0.7
4,660,661 + PfGW456L13_4144 0.47 -0.9
4,660,661 + PfGW456L13_4144 0.47 -0.3
4,660,739 + PfGW456L13_4144 0.55 -0.0
4,660,740 - PfGW456L13_4144 0.55 +0.3
4,660,755 + PfGW456L13_4144 0.56 +0.8
4,660,755 + PfGW456L13_4144 0.56 +1.6
4,660,755 + PfGW456L13_4144 0.56 -0.8
4,660,755 + PfGW456L13_4144 0.56 -1.4
4,660,755 + PfGW456L13_4144 0.56 -0.1
4,660,755 + PfGW456L13_4144 0.56 -2.0
4,660,755 + PfGW456L13_4144 0.56 -0.4
4,660,755 + PfGW456L13_4144 0.56 -0.5
4,660,755 + PfGW456L13_4144 0.56 +0.1
4,660,755 + PfGW456L13_4144 0.56 +0.6
4,660,755 + PfGW456L13_4144 0.56 -0.6
4,660,755 + PfGW456L13_4144 0.56 +2.7
4,660,756 - PfGW456L13_4144 0.56 -0.2
4,660,756 - PfGW456L13_4144 0.56 +0.9
4,660,756 - PfGW456L13_4144 0.56 +1.0
4,660,756 - PfGW456L13_4144 0.56 -0.6
4,660,793 + PfGW456L13_4144 0.60 +1.2
4,660,793 + PfGW456L13_4144 0.60 -0.1
4,660,793 + PfGW456L13_4144 0.60 +1.3
4,660,794 - PfGW456L13_4144 0.60 +0.0
4,660,794 - PfGW456L13_4144 0.60 -1.2
4,660,872 - PfGW456L13_4144 0.68 +0.8
4,660,896 + PfGW456L13_4144 0.71 -0.7
4,660,896 + PfGW456L13_4144 0.71 +0.5
4,660,896 + PfGW456L13_4144 0.71 +0.3
4,660,896 + PfGW456L13_4144 0.71 +0.6
4,660,896 + PfGW456L13_4144 0.71 +0.1
4,660,896 + PfGW456L13_4144 0.71 +0.7
4,660,896 + PfGW456L13_4144 0.71 +0.1
4,661,054 + PfGW456L13_4144 0.87 +0.0
4,661,054 + PfGW456L13_4144 0.87 +0.2
4,661,055 - PfGW456L13_4144 0.87 +0.5
4,661,055 - PfGW456L13_4144 0.87 +1.5
4,661,055 - PfGW456L13_4144 0.87 -0.0
4,661,102 + +2.0
4,661,122 + +0.3
4,661,123 - +0.1
4,661,125 + -0.0
4,661,125 + +0.7
4,661,265 + +0.7
4,661,272 + +3.1
4,661,272 + -1.1
4,661,272 + +1.7
4,661,273 - -2.0
4,661,273 - +1.9
4,661,367 - PfGW456L13_4145 0.12 -0.5
4,661,377 + PfGW456L13_4145 0.13 -0.5
4,661,378 - PfGW456L13_4145 0.14 -0.8
4,661,429 - PfGW456L13_4145 0.21 -2.0
4,661,429 - PfGW456L13_4145 0.21 +0.4
4,661,485 + PfGW456L13_4145 0.28 -0.4
4,661,486 - PfGW456L13_4145 0.28 -2.4
4,661,486 - PfGW456L13_4145 0.28 -1.8
4,661,572 - PfGW456L13_4145 0.40 -0.8
4,661,626 + PfGW456L13_4145 0.48 -0.4
4,661,626 + PfGW456L13_4145 0.48 -2.4
4,661,627 - PfGW456L13_4145 0.48 -2.7
4,661,740 + PfGW456L13_4145 0.64 -1.1
4,661,741 - PfGW456L13_4145 0.64 -1.9
4,661,755 + PfGW456L13_4145 0.66 -1.4
4,661,756 - PfGW456L13_4145 0.66 -1.1
4,661,821 + PfGW456L13_4145 0.75 -0.5
4,661,852 - PfGW456L13_4145 0.79 -2.7
4,661,872 + PfGW456L13_4145 0.82 +0.3
4,661,872 + PfGW456L13_4145 0.82 -1.4
4,661,873 - PfGW456L13_4145 0.82 -2.1
4,662,010 - -0.8
4,662,029 + -1.1
4,662,030 - +0.1
4,662,030 - +0.0
4,662,099 + -1.8
4,662,100 - +0.1
4,662,100 - -0.3
4,662,162 + +0.3
4,662,162 + -0.3
4,662,163 - -0.2
4,662,163 - +0.6
4,662,163 - -2.0
4,662,163 - -0.9
4,662,177 + +1.5

Or see this region's nucleotide sequence