Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2632

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2631 and PfGW456L13_2632 are separated by 72 nucleotides PfGW456L13_2631 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 2,929,278 to 2,931,062 _2631 PfGW456L13_2632 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 2,931,135 to 2,931,809 _2632 Position (kb) 2931 2932Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2930.779 kb on + strand, within PfGW456L13_2631at 2930.780 kb on - strand, within PfGW456L13_2631at 2930.858 kb on - strand, within PfGW456L13_2631at 2931.041 kb on - strandat 2931.066 kb on + strandat 2931.066 kb on + strandat 2931.071 kb on - strandat 2931.089 kb on - strandat 2931.089 kb on - strandat 2931.114 kb on + strandat 2931.115 kb on - strandat 2931.115 kb on - strandat 2931.220 kb on + strand, within PfGW456L13_2632at 2931.383 kb on - strand, within PfGW456L13_2632at 2931.604 kb on + strand, within PfGW456L13_2632at 2931.628 kb on + strand, within PfGW456L13_2632at 2931.723 kb on + strand, within PfGW456L13_2632at 2931.889 kb on + strandat 2931.890 kb on - strandat 2931.893 kb on + strandat 2931.920 kb on - strandat 2932.071 kb on + strandat 2932.075 kb on + strandat 2932.326 kb on + strandat 2932.371 kb on + strandat 2932.388 kb on - strandat 2932.448 kb on + strandat 2932.466 kb on + strandat 2932.467 kb on - strandat 2932.475 kb on + strandat 2932.475 kb on + strandat 2932.475 kb on + strandat 2932.475 kb on + strandat 2932.475 kb on + strandat 2932.475 kb on + strandat 2932.476 kb on - strandat 2932.476 kb on - strandat 2932.476 kb on - strandat 2932.476 kb on - strandat 2932.476 kb on - strandat 2932.518 kb on + strandat 2932.527 kb on + strandat 2932.555 kb on + strandat 2932.555 kb on + strandat 2932.555 kb on + strandat 2932.555 kb on + strandat 2932.555 kb on + strandat 2932.555 kb on + strandat 2932.555 kb on + strandat 2932.556 kb on - strandat 2932.556 kb on - strandat 2932.556 kb on - strandat 2932.556 kb on - strandat 2932.556 kb on - strandat 2932.556 kb on - strandat 2932.556 kb on - strandat 2932.557 kb on + strandat 2932.557 kb on + strandat 2932.557 kb on + strandat 2932.557 kb on + strandat 2932.557 kb on + strandat 2932.558 kb on - strandat 2932.558 kb on - strandat 2932.558 kb on - strandat 2932.567 kb on - strandat 2932.575 kb on + strandat 2932.576 kb on - strandat 2932.615 kb on + strandat 2932.753 kb on + strandat 2932.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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2,930,779 + PfGW456L13_2631 0.84 +1.1
2,930,780 - PfGW456L13_2631 0.84 +2.6
2,930,858 - PfGW456L13_2631 0.89 -2.3
2,931,041 - -0.3
2,931,066 + -0.3
2,931,066 + +0.5
2,931,071 - +1.1
2,931,089 - +1.3
2,931,089 - +0.3
2,931,114 + -0.1
2,931,115 - -1.2
2,931,115 - -1.5
2,931,220 + PfGW456L13_2632 0.13 -0.6
2,931,383 - PfGW456L13_2632 0.37 +0.3
2,931,604 + PfGW456L13_2632 0.69 -1.9
2,931,628 + PfGW456L13_2632 0.73 -0.4
2,931,723 + PfGW456L13_2632 0.87 -0.1
2,931,889 + -1.0
2,931,890 - +1.4
2,931,893 + -0.5
2,931,920 - -0.6
2,932,071 + +0.4
2,932,075 + +1.5
2,932,326 + +0.9
2,932,371 + -0.0
2,932,388 - -0.7
2,932,448 + +0.8
2,932,466 + +1.1
2,932,467 - +1.3
2,932,475 + +0.1
2,932,475 + +0.2
2,932,475 + +0.7
2,932,475 + -0.9
2,932,475 + -1.6
2,932,475 + +0.6
2,932,476 - -0.4
2,932,476 - -0.6
2,932,476 - -0.7
2,932,476 - -0.7
2,932,476 - -1.9
2,932,518 + +0.2
2,932,527 + +1.3
2,932,555 + +0.2
2,932,555 + +0.7
2,932,555 + +2.1
2,932,555 + -0.4
2,932,555 + +0.4
2,932,555 + +1.2
2,932,555 + -0.4
2,932,556 - +1.2
2,932,556 - -2.9
2,932,556 - -1.9
2,932,556 - +0.1
2,932,556 - -0.1
2,932,556 - +0.1
2,932,556 - -1.6
2,932,557 + -1.7
2,932,557 + -0.1
2,932,557 + -0.6
2,932,557 + -1.9
2,932,557 + +0.6
2,932,558 - -0.1
2,932,558 - +0.2
2,932,558 - -0.9
2,932,567 - -1.4
2,932,575 + +0.7
2,932,576 - -0.3
2,932,615 + +0.6
2,932,753 + +1.2
2,932,754 - +0.3

Or see this region's nucleotide sequence