Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2034

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2033 and PfGW456L13_2034 overlap by 4 nucleotidesPfGW456L13_2034 and PfGW456L13_2035 overlap by 21 nucleotides PfGW456L13_2033 - 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939, at 2,235,945 to 2,237,297 _2033 PfGW456L13_2034 - hypothetical protein, at 2,237,294 to 2,237,440 _2034 PfGW456L13_2035 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 2,237,420 to 2,239,663 _2035 Position (kb) 2237 2238Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2236.492 kb on + strand, within PfGW456L13_2033at 2236.493 kb on - strand, within PfGW456L13_2033at 2236.687 kb on + strand, within PfGW456L13_2033at 2236.687 kb on + strand, within PfGW456L13_2033at 2236.688 kb on - strand, within PfGW456L13_2033at 2236.688 kb on - strand, within PfGW456L13_2033at 2236.688 kb on - strand, within PfGW456L13_2033at 2236.770 kb on + strand, within PfGW456L13_2033at 2236.992 kb on - strand, within PfGW456L13_2033at 2237.134 kb on + strand, within PfGW456L13_2033at 2237.154 kb on + strand, within PfGW456L13_2033at 2237.154 kb on + strand, within PfGW456L13_2033at 2237.154 kb on + strand, within PfGW456L13_2033at 2237.154 kb on + strand, within PfGW456L13_2033at 2237.154 kb on + strand, within PfGW456L13_2033at 2237.154 kb on + strand, within PfGW456L13_2033at 2237.154 kb on + strand, within PfGW456L13_2033at 2237.154 kb on + strand, within PfGW456L13_2033at 2237.155 kb on - strand, within PfGW456L13_2033at 2237.155 kb on - strand, within PfGW456L13_2033at 2237.155 kb on - strand, within PfGW456L13_2033at 2237.155 kb on - strand, within PfGW456L13_2033at 2237.155 kb on - strand, within PfGW456L13_2033at 2237.155 kb on - strand, within PfGW456L13_2033at 2237.155 kb on - strand, within PfGW456L13_2033at 2237.155 kb on - strand, within PfGW456L13_2033at 2237.243 kb on + strandat 2237.243 kb on + strandat 2237.244 kb on - strandat 2237.295 kb on + strandat 2237.295 kb on + strandat 2237.296 kb on - strandat 2237.296 kb on - strandat 2237.404 kb on - strand, within PfGW456L13_2034at 2237.412 kb on + strand, within PfGW456L13_2034at 2237.412 kb on + strand, within PfGW456L13_2034at 2237.413 kb on - strand, within PfGW456L13_2034at 2237.424 kb on + strandat 2237.425 kb on - strandat 2237.464 kb on + strandat 2237.547 kb on - strandat 2237.603 kb on - strandat 2237.603 kb on - strandat 2237.603 kb on - strandat 2237.690 kb on + strand, within PfGW456L13_2035at 2237.690 kb on + strand, within PfGW456L13_2035at 2237.996 kb on + strand, within PfGW456L13_2035at 2237.996 kb on + strand, within PfGW456L13_2035at 2237.997 kb on - strand, within PfGW456L13_2035at 2237.997 kb on - strand, within PfGW456L13_2035at 2237.997 kb on - strand, within PfGW456L13_2035at 2237.997 kb on - strand, within PfGW456L13_2035at 2237.997 kb on - strand, within PfGW456L13_2035at 2237.997 kb on - strand, within PfGW456L13_2035at 2237.997 kb on - strand, within PfGW456L13_2035at 2238.032 kb on - strand, within PfGW456L13_2035at 2238.065 kb on + strand, within PfGW456L13_2035at 2238.083 kb on + strand, within PfGW456L13_2035at 2238.084 kb on - strand, within PfGW456L13_2035at 2238.084 kb on - strand, within PfGW456L13_2035at 2238.084 kb on - strand, within PfGW456L13_2035at 2238.084 kb on - strand, within PfGW456L13_2035at 2238.221 kb on + strand, within PfGW456L13_2035at 2238.221 kb on + strand, within PfGW456L13_2035at 2238.222 kb on - strand, within PfGW456L13_2035at 2238.222 kb on - strand, within PfGW456L13_2035at 2238.222 kb on - strand, within PfGW456L13_2035at 2238.272 kb on + strand, within PfGW456L13_2035at 2238.273 kb on - strand, within PfGW456L13_2035at 2238.273 kb on - strand, within PfGW456L13_2035at 2238.273 kb on - strand, within PfGW456L13_2035at 2238.320 kb on + strand, within PfGW456L13_2035at 2238.380 kb on + strand, within PfGW456L13_2035at 2238.380 kb on + strand, within PfGW456L13_2035at 2238.381 kb on - strand, within PfGW456L13_2035at 2238.381 kb on - strand, within PfGW456L13_2035

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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2,236,492 + PfGW456L13_2033 0.40 -0.5
2,236,493 - PfGW456L13_2033 0.41 -1.4
2,236,687 + PfGW456L13_2033 0.55 +0.9
2,236,687 + PfGW456L13_2033 0.55 +1.0
2,236,688 - PfGW456L13_2033 0.55 +0.1
2,236,688 - PfGW456L13_2033 0.55 -1.5
2,236,688 - PfGW456L13_2033 0.55 -1.1
2,236,770 + PfGW456L13_2033 0.61 +0.5
2,236,992 - PfGW456L13_2033 0.77 +1.0
2,237,134 + PfGW456L13_2033 0.88 -0.0
2,237,154 + PfGW456L13_2033 0.89 -1.2
2,237,154 + PfGW456L13_2033 0.89 +1.6
2,237,154 + PfGW456L13_2033 0.89 +0.6
2,237,154 + PfGW456L13_2033 0.89 -0.4
2,237,154 + PfGW456L13_2033 0.89 -0.6
2,237,154 + PfGW456L13_2033 0.89 -1.0
2,237,154 + PfGW456L13_2033 0.89 +0.7
2,237,154 + PfGW456L13_2033 0.89 +0.1
2,237,155 - PfGW456L13_2033 0.89 -1.9
2,237,155 - PfGW456L13_2033 0.89 -1.3
2,237,155 - PfGW456L13_2033 0.89 -3.3
2,237,155 - PfGW456L13_2033 0.89 -3.2
2,237,155 - PfGW456L13_2033 0.89 -2.7
2,237,155 - PfGW456L13_2033 0.89 -3.7
2,237,155 - PfGW456L13_2033 0.89 -2.4
2,237,155 - PfGW456L13_2033 0.89 -4.1
2,237,243 + +0.7
2,237,243 + -0.3
2,237,244 - -1.3
2,237,295 + -1.0
2,237,295 + +0.7
2,237,296 - -2.9
2,237,296 - -1.5
2,237,404 - PfGW456L13_2034 0.75 -0.3
2,237,412 + PfGW456L13_2034 0.80 -4.2
2,237,412 + PfGW456L13_2034 0.80 -2.2
2,237,413 - PfGW456L13_2034 0.81 -1.0
2,237,424 + -3.2
2,237,425 - -1.3
2,237,464 + -3.9
2,237,547 - -3.3
2,237,603 - -2.3
2,237,603 - -2.6
2,237,603 - -4.4
2,237,690 + PfGW456L13_2035 0.12 -4.3
2,237,690 + PfGW456L13_2035 0.12 -3.3
2,237,996 + PfGW456L13_2035 0.26 -0.6
2,237,996 + PfGW456L13_2035 0.26 -3.5
2,237,997 - PfGW456L13_2035 0.26 -2.8
2,237,997 - PfGW456L13_2035 0.26 -2.8
2,237,997 - PfGW456L13_2035 0.26 -0.6
2,237,997 - PfGW456L13_2035 0.26 -4.5
2,237,997 - PfGW456L13_2035 0.26 -3.4
2,237,997 - PfGW456L13_2035 0.26 -2.0
2,237,997 - PfGW456L13_2035 0.26 -3.0
2,238,032 - PfGW456L13_2035 0.27 -3.1
2,238,065 + PfGW456L13_2035 0.29 -2.5
2,238,083 + PfGW456L13_2035 0.30 -3.5
2,238,084 - PfGW456L13_2035 0.30 -2.0
2,238,084 - PfGW456L13_2035 0.30 -3.8
2,238,084 - PfGW456L13_2035 0.30 -2.0
2,238,084 - PfGW456L13_2035 0.30 -2.7
2,238,221 + PfGW456L13_2035 0.36 -1.8
2,238,221 + PfGW456L13_2035 0.36 -3.3
2,238,222 - PfGW456L13_2035 0.36 -4.5
2,238,222 - PfGW456L13_2035 0.36 -2.6
2,238,222 - PfGW456L13_2035 0.36 -1.0
2,238,272 + PfGW456L13_2035 0.38 -2.8
2,238,273 - PfGW456L13_2035 0.38 -4.2
2,238,273 - PfGW456L13_2035 0.38 -3.2
2,238,273 - PfGW456L13_2035 0.38 -2.9
2,238,320 + PfGW456L13_2035 0.40 -2.0
2,238,380 + PfGW456L13_2035 0.43 -1.8
2,238,380 + PfGW456L13_2035 0.43 -2.5
2,238,381 - PfGW456L13_2035 0.43 -2.8
2,238,381 - PfGW456L13_2035 0.43 -2.7

Or see this region's nucleotide sequence