Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1207

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1205 and PfGW456L13_1206 are separated by 67 nucleotidesPfGW456L13_1206 and PfGW456L13_1207 are separated by 137 nucleotidesPfGW456L13_1207 and PfGW456L13_1208 are separated by 73 nucleotides PfGW456L13_1205 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 1,345,632 to 1,346,303 _1205 PfGW456L13_1206 - DnaJ-like protein DjlA, at 1,346,371 to 1,347,072 _1206 PfGW456L13_1207 - FIG00953890: hypothetical protein, at 1,347,210 to 1,348,199 _1207 PfGW456L13_1208 - Probable two-component sensor, near polyamine transporter, at 1,348,273 to 1,350,669 _1208 Position (kb) 1347 1348 1349Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1346.284 kb on + strandat 1346.284 kb on + strandat 1346.284 kb on + strandat 1346.285 kb on - strandat 1346.285 kb on - strandat 1346.285 kb on - strandat 1346.287 kb on + strandat 1346.287 kb on + strandat 1346.287 kb on + strandat 1346.288 kb on - strandat 1346.288 kb on - strandat 1346.288 kb on - strandat 1346.288 kb on - strandat 1346.288 kb on - strandat 1346.288 kb on - strandat 1346.288 kb on - strandat 1346.288 kb on - strandat 1346.351 kb on + strandat 1346.492 kb on + strand, within PfGW456L13_1206at 1346.821 kb on + strand, within PfGW456L13_1206at 1346.821 kb on + strand, within PfGW456L13_1206at 1346.821 kb on + strand, within PfGW456L13_1206at 1346.822 kb on - strand, within PfGW456L13_1206at 1346.822 kb on - strand, within PfGW456L13_1206at 1346.822 kb on - strand, within PfGW456L13_1206at 1346.863 kb on + strand, within PfGW456L13_1206at 1346.863 kb on + strand, within PfGW456L13_1206at 1346.864 kb on - strand, within PfGW456L13_1206at 1347.031 kb on - strandat 1347.037 kb on + strandat 1347.037 kb on + strandat 1347.038 kb on - strandat 1347.039 kb on + strandat 1347.040 kb on - strandat 1347.040 kb on - strandat 1347.133 kb on + strandat 1347.133 kb on + strandat 1347.133 kb on + strandat 1347.133 kb on + strandat 1347.133 kb on + strandat 1347.133 kb on + strandat 1347.133 kb on + strandat 1347.133 kb on + strandat 1347.133 kb on + strandat 1347.133 kb on + strandat 1347.133 kb on + strandat 1347.161 kb on + strandat 1347.161 kb on + strandat 1347.162 kb on - strandat 1347.388 kb on + strand, within PfGW456L13_1207at 1347.388 kb on + strand, within PfGW456L13_1207at 1347.388 kb on + strand, within PfGW456L13_1207at 1347.388 kb on + strand, within PfGW456L13_1207at 1347.388 kb on + strand, within PfGW456L13_1207at 1347.388 kb on + strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.514 kb on - strand, within PfGW456L13_1207at 1347.518 kb on - strand, within PfGW456L13_1207at 1347.518 kb on - strand, within PfGW456L13_1207at 1347.533 kb on - strand, within PfGW456L13_1207at 1347.563 kb on + strand, within PfGW456L13_1207at 1347.564 kb on - strand, within PfGW456L13_1207at 1347.678 kb on + strand, within PfGW456L13_1207at 1347.678 kb on + strand, within PfGW456L13_1207at 1347.821 kb on + strand, within PfGW456L13_1207at 1347.821 kb on + strand, within PfGW456L13_1207at 1347.821 kb on + strand, within PfGW456L13_1207at 1347.822 kb on - strand, within PfGW456L13_1207at 1347.822 kb on - strand, within PfGW456L13_1207at 1347.822 kb on - strand, within PfGW456L13_1207at 1347.822 kb on - strand, within PfGW456L13_1207at 1347.914 kb on + strand, within PfGW456L13_1207at 1347.915 kb on - strand, within PfGW456L13_1207at 1347.915 kb on - strand, within PfGW456L13_1207at 1347.929 kb on + strand, within PfGW456L13_1207at 1347.930 kb on - strand, within PfGW456L13_1207at 1348.046 kb on + strand, within PfGW456L13_1207at 1348.046 kb on + strand, within PfGW456L13_1207at 1348.046 kb on + strand, within PfGW456L13_1207at 1348.047 kb on - strand, within PfGW456L13_1207at 1348.047 kb on - strand, within PfGW456L13_1207at 1348.205 kb on - strandat 1348.249 kb on + strandat 1348.249 kb on + strandat 1348.250 kb on - strandat 1348.250 kb on - strandat 1348.250 kb on - strandat 1348.250 kb on - strandat 1348.438 kb on + strandat 1348.439 kb on - strandat 1348.439 kb on - strandat 1348.447 kb on + strandat 1348.448 kb on - strandat 1348.448 kb on - strandat 1348.448 kb on - strandat 1348.448 kb on - strandat 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.768 kb on + strand, within PfGW456L13_1208at 1348.768 kb on + strand, within PfGW456L13_1208at 1348.769 kb on - strand, within PfGW456L13_1208at 1348.769 kb on - strand, within PfGW456L13_1208at 1348.783 kb on + strand, within PfGW456L13_1208at 1348.784 kb on - strand, within PfGW456L13_1208at 1348.836 kb on - strand, within PfGW456L13_1208at 1348.858 kb on + strand, within PfGW456L13_1208at 1348.858 kb on + strand, within PfGW456L13_1208at 1348.858 kb on + strand, within PfGW456L13_1208at 1348.996 kb on - strand, within PfGW456L13_1208at 1349.071 kb on + strand, within PfGW456L13_1208

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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1,346,284 + -0.0
1,346,284 + +1.0
1,346,284 + -0.4
1,346,285 - -3.1
1,346,285 - +0.2
1,346,285 - +0.5
1,346,287 + +0.2
1,346,287 + -1.4
1,346,287 + +0.5
1,346,288 - +0.3
1,346,288 - -2.8
1,346,288 - -2.8
1,346,288 - -0.9
1,346,288 - -1.1
1,346,288 - -0.2
1,346,288 - +0.6
1,346,288 - -1.3
1,346,351 + -0.8
1,346,492 + PfGW456L13_1206 0.17 -0.8
1,346,821 + PfGW456L13_1206 0.64 +0.7
1,346,821 + PfGW456L13_1206 0.64 +0.8
1,346,821 + PfGW456L13_1206 0.64 +1.8
1,346,822 - PfGW456L13_1206 0.64 -3.2
1,346,822 - PfGW456L13_1206 0.64 +1.2
1,346,822 - PfGW456L13_1206 0.64 +0.7
1,346,863 + PfGW456L13_1206 0.70 +0.7
1,346,863 + PfGW456L13_1206 0.70 -0.6
1,346,864 - PfGW456L13_1206 0.70 +0.5
1,347,031 - +0.2
1,347,037 + +0.6
1,347,037 + -1.7
1,347,038 - +0.8
1,347,039 + -1.2
1,347,040 - +0.4
1,347,040 - -1.4
1,347,133 + +2.2
1,347,133 + -0.2
1,347,133 + +0.7
1,347,133 + -1.0
1,347,133 + +0.3
1,347,133 + -0.6
1,347,133 + +0.4
1,347,133 + +1.9
1,347,133 + +0.9
1,347,133 + +0.5
1,347,133 + -0.9
1,347,161 + -0.3
1,347,161 + +0.8
1,347,162 - +0.1
1,347,388 + PfGW456L13_1207 0.18 +1.1
1,347,388 + PfGW456L13_1207 0.18 +0.1
1,347,388 + PfGW456L13_1207 0.18 +0.3
1,347,388 + PfGW456L13_1207 0.18 +0.2
1,347,388 + PfGW456L13_1207 0.18 +0.1
1,347,388 + PfGW456L13_1207 0.18 +1.2
1,347,389 - PfGW456L13_1207 0.18 -0.5
1,347,389 - PfGW456L13_1207 0.18 -1.8
1,347,389 - PfGW456L13_1207 0.18 +1.0
1,347,389 - PfGW456L13_1207 0.18 +1.1
1,347,389 - PfGW456L13_1207 0.18 -0.9
1,347,389 - PfGW456L13_1207 0.18 -0.3
1,347,389 - PfGW456L13_1207 0.18 -0.8
1,347,514 - PfGW456L13_1207 0.31 +0.2
1,347,518 - PfGW456L13_1207 0.31 -1.1
1,347,518 - PfGW456L13_1207 0.31 -0.2
1,347,533 - PfGW456L13_1207 0.33 +0.2
1,347,563 + PfGW456L13_1207 0.36 +0.5
1,347,564 - PfGW456L13_1207 0.36 +0.8
1,347,678 + PfGW456L13_1207 0.47 -0.7
1,347,678 + PfGW456L13_1207 0.47 +0.5
1,347,821 + PfGW456L13_1207 0.62 +0.8
1,347,821 + PfGW456L13_1207 0.62 +0.4
1,347,821 + PfGW456L13_1207 0.62 +0.0
1,347,822 - PfGW456L13_1207 0.62 +0.5
1,347,822 - PfGW456L13_1207 0.62 +0.8
1,347,822 - PfGW456L13_1207 0.62 +1.0
1,347,822 - PfGW456L13_1207 0.62 +1.0
1,347,914 + PfGW456L13_1207 0.71 +0.6
1,347,915 - PfGW456L13_1207 0.71 -0.0
1,347,915 - PfGW456L13_1207 0.71 -1.1
1,347,929 + PfGW456L13_1207 0.73 -0.8
1,347,930 - PfGW456L13_1207 0.73 +1.0
1,348,046 + PfGW456L13_1207 0.84 -0.5
1,348,046 + PfGW456L13_1207 0.84 -0.4
1,348,046 + PfGW456L13_1207 0.84 +1.3
1,348,047 - PfGW456L13_1207 0.85 -0.3
1,348,047 - PfGW456L13_1207 0.85 -0.7
1,348,205 - +1.1
1,348,249 + -0.9
1,348,249 + +0.4
1,348,250 - +0.2
1,348,250 - -0.5
1,348,250 - -0.5
1,348,250 - +0.1
1,348,438 + +0.4
1,348,439 - -0.5
1,348,439 - +0.5
1,348,447 + -1.1
1,348,448 - +1.1
1,348,448 - -2.1
1,348,448 - +0.4
1,348,448 - +0.8
1,348,651 + PfGW456L13_1208 0.16 +0.8
1,348,651 + PfGW456L13_1208 0.16 -0.1
1,348,651 + PfGW456L13_1208 0.16 +0.2
1,348,651 + PfGW456L13_1208 0.16 -1.0
1,348,651 + PfGW456L13_1208 0.16 +0.4
1,348,651 + PfGW456L13_1208 0.16 -0.3
1,348,651 + PfGW456L13_1208 0.16 +0.2
1,348,651 + PfGW456L13_1208 0.16 -0.6
1,348,652 - PfGW456L13_1208 0.16 +0.3
1,348,652 - PfGW456L13_1208 0.16 +1.3
1,348,652 - PfGW456L13_1208 0.16 +0.3
1,348,652 - PfGW456L13_1208 0.16 -0.1
1,348,652 - PfGW456L13_1208 0.16 +0.1
1,348,652 - PfGW456L13_1208 0.16 +0.7
1,348,652 - PfGW456L13_1208 0.16 -0.3
1,348,768 + PfGW456L13_1208 0.21 -1.2
1,348,768 + PfGW456L13_1208 0.21 +0.7
1,348,769 - PfGW456L13_1208 0.21 -0.1
1,348,769 - PfGW456L13_1208 0.21 -0.2
1,348,783 + PfGW456L13_1208 0.21 +0.7
1,348,784 - PfGW456L13_1208 0.21 +0.2
1,348,836 - PfGW456L13_1208 0.23 -1.0
1,348,858 + PfGW456L13_1208 0.24 +0.8
1,348,858 + PfGW456L13_1208 0.24 -0.4
1,348,858 + PfGW456L13_1208 0.24 +0.5
1,348,996 - PfGW456L13_1208 0.30 -0.4
1,349,071 + PfGW456L13_1208 0.33 +0.6

Or see this region's nucleotide sequence