Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1005 and PfGW456L13_1006 are separated by 26 nucleotides PfGW456L13_1006 and PfGW456L13_1007 are separated by 7 nucleotides PfGW456L13_1007 and PfGW456L13_1008 are separated by 181 nucleotides PfGW456L13_1008 and PfGW456L13_1009 are separated by 4 nucleotides
PfGW456L13_1005 - FIG003551: hypothetical protein, at 1,118,561 to 1,118,995
_1005
PfGW456L13_1006 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 1,119,022 to 1,119,642
_1006
PfGW456L13_1007 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 1,119,650 to 1,120,789
_1007
PfGW456L13_1008 - COG1872, at 1,120,971 to 1,121,267
_1008
PfGW456L13_1009 - Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock), at 1,121,272 to 1,121,862
_1009
Position (kb)
1119
1120
1121 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1118.676 kb on + strand, within PfGW456L13_1005 at 1118.676 kb on + strand, within PfGW456L13_1005 at 1118.677 kb on - strand, within PfGW456L13_1005 at 1118.677 kb on - strand, within PfGW456L13_1005 at 1118.677 kb on - strand, within PfGW456L13_1005 at 1118.677 kb on - strand, within PfGW456L13_1005 at 1118.677 kb on - strand, within PfGW456L13_1005 at 1118.677 kb on - strand, within PfGW456L13_1005 at 1118.677 kb on - strand, within PfGW456L13_1005 at 1118.677 kb on - strand, within PfGW456L13_1005 at 1118.677 kb on - strand, within PfGW456L13_1005 at 1118.679 kb on + strand, within PfGW456L13_1005 at 1118.679 kb on + strand, within PfGW456L13_1005 at 1118.679 kb on + strand, within PfGW456L13_1005 at 1118.679 kb on + strand, within PfGW456L13_1005 at 1118.679 kb on + strand, within PfGW456L13_1005 at 1118.679 kb on + strand, within PfGW456L13_1005 at 1118.679 kb on + strand, within PfGW456L13_1005 at 1118.680 kb on - strand, within PfGW456L13_1005 at 1118.680 kb on - strand, within PfGW456L13_1005 at 1118.721 kb on + strand, within PfGW456L13_1005 at 1118.721 kb on + strand, within PfGW456L13_1005 at 1118.721 kb on + strand, within PfGW456L13_1005 at 1118.721 kb on + strand, within PfGW456L13_1005 at 1118.722 kb on - strand, within PfGW456L13_1005 at 1118.722 kb on - strand, within PfGW456L13_1005 at 1118.722 kb on - strand, within PfGW456L13_1005 at 1118.722 kb on - strand, within PfGW456L13_1005 at 1118.862 kb on + strand, within PfGW456L13_1005 at 1118.863 kb on - strand, within PfGW456L13_1005 at 1118.863 kb on - strand, within PfGW456L13_1005 at 1118.863 kb on - strand, within PfGW456L13_1005 at 1118.863 kb on - strand, within PfGW456L13_1005 at 1118.863 kb on - strand, within PfGW456L13_1005 at 1118.863 kb on - strand, within PfGW456L13_1005 at 1118.863 kb on - strand, within PfGW456L13_1005 at 1118.883 kb on + strand, within PfGW456L13_1005 at 1118.883 kb on + strand, within PfGW456L13_1005 at 1118.883 kb on + strand, within PfGW456L13_1005 at 1118.884 kb on - strand, within PfGW456L13_1005 at 1118.884 kb on - strand, within PfGW456L13_1005 at 1118.884 kb on - strand, within PfGW456L13_1005 at 1118.884 kb on - strand, within PfGW456L13_1005 at 1118.884 kb on - strand, within PfGW456L13_1005 at 1118.884 kb on - strand, within PfGW456L13_1005 at 1118.884 kb on - strand, within PfGW456L13_1005 at 1118.972 kb on + strand at 1118.973 kb on - strand at 1118.973 kb on - strand at 1118.984 kb on + strand at 1119.013 kb on + strand at 1119.013 kb on + strand at 1119.014 kb on - strand at 1119.068 kb on + strand at 1119.068 kb on + strand at 1119.069 kb on - strand at 1119.069 kb on - strand at 1119.069 kb on - strand at 1119.072 kb on + strand at 1119.073 kb on - strand at 1119.085 kb on + strand, within PfGW456L13_1006 at 1119.086 kb on - strand, within PfGW456L13_1006 at 1119.093 kb on + strand, within PfGW456L13_1006 at 1119.100 kb on + strand, within PfGW456L13_1006 at 1119.100 kb on + strand, within PfGW456L13_1006 at 1119.100 kb on + strand, within PfGW456L13_1006 at 1119.100 kb on + strand, within PfGW456L13_1006 at 1119.100 kb on + strand, within PfGW456L13_1006 at 1119.101 kb on - strand, within PfGW456L13_1006 at 1119.101 kb on - strand, within PfGW456L13_1006 at 1119.101 kb on - strand, within PfGW456L13_1006 at 1119.101 kb on - strand, within PfGW456L13_1006 at 1119.227 kb on + strand, within PfGW456L13_1006 at 1119.236 kb on + strand, within PfGW456L13_1006 at 1119.281 kb on + strand, within PfGW456L13_1006 at 1119.658 kb on + strand at 1119.658 kb on + strand at 1119.658 kb on + strand at 1119.658 kb on + strand at 1119.659 kb on - strand at 1119.659 kb on - strand at 1119.672 kb on + strand at 1119.672 kb on + strand at 1119.672 kb on + strand at 1119.672 kb on + strand at 1119.672 kb on + strand at 1119.672 kb on + strand at 1119.673 kb on - strand at 1119.673 kb on - strand at 1119.673 kb on - strand at 1119.673 kb on - strand at 1119.673 kb on - strand at 1119.673 kb on - strand at 1119.912 kb on + strand, within PfGW456L13_1007 at 1119.939 kb on + strand, within PfGW456L13_1007 at 1119.990 kb on + strand, within PfGW456L13_1007 at 1119.990 kb on + strand, within PfGW456L13_1007 at 1119.990 kb on + strand, within PfGW456L13_1007 at 1119.990 kb on + strand, within PfGW456L13_1007 at 1120.026 kb on + strand, within PfGW456L13_1007 at 1120.027 kb on - strand, within PfGW456L13_1007 at 1120.027 kb on - strand, within PfGW456L13_1007 at 1120.027 kb on - strand, within PfGW456L13_1007 at 1120.089 kb on + strand, within PfGW456L13_1007 at 1120.089 kb on + strand, within PfGW456L13_1007 at 1120.089 kb on + strand, within PfGW456L13_1007 at 1120.089 kb on + strand, within PfGW456L13_1007 at 1120.089 kb on + strand, within PfGW456L13_1007 at 1120.090 kb on - strand, within PfGW456L13_1007 at 1120.090 kb on - strand, within PfGW456L13_1007 at 1120.281 kb on + strand, within PfGW456L13_1007 at 1120.281 kb on + strand, within PfGW456L13_1007 at 1120.281 kb on + strand, within PfGW456L13_1007 at 1120.281 kb on + strand, within PfGW456L13_1007 at 1120.282 kb on - strand, within PfGW456L13_1007 at 1120.282 kb on - strand, within PfGW456L13_1007 at 1120.282 kb on - strand, within PfGW456L13_1007 at 1120.406 kb on + strand, within PfGW456L13_1007 at 1120.665 kb on + strand, within PfGW456L13_1007 at 1120.665 kb on + strand, within PfGW456L13_1007 at 1120.666 kb on - strand, within PfGW456L13_1007 at 1120.666 kb on - strand, within PfGW456L13_1007 at 1120.666 kb on - strand, within PfGW456L13_1007 at 1120.674 kb on + strand, within PfGW456L13_1007 at 1120.674 kb on + strand, within PfGW456L13_1007 at 1120.674 kb on + strand, within PfGW456L13_1007 at 1120.674 kb on + strand, within PfGW456L13_1007 at 1120.675 kb on - strand, within PfGW456L13_1007 at 1120.675 kb on - strand, within PfGW456L13_1007 at 1120.675 kb on - strand, within PfGW456L13_1007 at 1120.686 kb on + strand at 1120.687 kb on - strand at 1120.752 kb on - strand at 1120.817 kb on + strand at 1120.817 kb on + strand at 1120.817 kb on + strand at 1120.817 kb on + strand at 1120.817 kb on + strand at 1120.818 kb on - strand at 1120.818 kb on - strand at 1120.818 kb on - strand at 1120.818 kb on - strand at 1120.818 kb on - strand at 1120.823 kb on + strand at 1120.824 kb on - strand at 1120.824 kb on - strand at 1121.119 kb on + strand, within PfGW456L13_1008 at 1121.119 kb on + strand, within PfGW456L13_1008 at 1121.119 kb on + strand, within PfGW456L13_1008 at 1121.119 kb on + strand, within PfGW456L13_1008 at 1121.120 kb on - strand, within PfGW456L13_1008 at 1121.120 kb on - strand, within PfGW456L13_1008 at 1121.120 kb on - strand, within PfGW456L13_1008 at 1121.467 kb on - strand, within PfGW456L13_1009 at 1121.678 kb on - strand, within PfGW456L13_1009 at 1121.753 kb on + strand, within PfGW456L13_1009 at 1121.753 kb on + strand, within PfGW456L13_1009 at 1121.754 kb on - strand, within PfGW456L13_1009 at 1121.779 kb on + strand, within PfGW456L13_1009
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 1,118,676 + PfGW456L13_1005 0.26 +0.5 1,118,676 + PfGW456L13_1005 0.26 +0.3 1,118,677 - PfGW456L13_1005 0.27 -0.3 1,118,677 - PfGW456L13_1005 0.27 -0.6 1,118,677 - PfGW456L13_1005 0.27 +0.0 1,118,677 - PfGW456L13_1005 0.27 +0.3 1,118,677 - PfGW456L13_1005 0.27 -0.1 1,118,677 - PfGW456L13_1005 0.27 +1.1 1,118,677 - PfGW456L13_1005 0.27 -0.6 1,118,677 - PfGW456L13_1005 0.27 -2.9 1,118,677 - PfGW456L13_1005 0.27 +0.3 1,118,679 + PfGW456L13_1005 0.27 +0.9 1,118,679 + PfGW456L13_1005 0.27 -0.8 1,118,679 + PfGW456L13_1005 0.27 -1.3 1,118,679 + PfGW456L13_1005 0.27 +0.9 1,118,679 + PfGW456L13_1005 0.27 +0.8 1,118,679 + PfGW456L13_1005 0.27 -0.1 1,118,679 + PfGW456L13_1005 0.27 -1.9 1,118,680 - PfGW456L13_1005 0.27 -0.3 1,118,680 - PfGW456L13_1005 0.27 -2.4 1,118,721 + PfGW456L13_1005 0.37 +0.1 1,118,721 + PfGW456L13_1005 0.37 +0.2 1,118,721 + PfGW456L13_1005 0.37 +1.7 1,118,721 + PfGW456L13_1005 0.37 +0.7 1,118,722 - PfGW456L13_1005 0.37 -0.0 1,118,722 - PfGW456L13_1005 0.37 +0.0 1,118,722 - PfGW456L13_1005 0.37 +0.1 1,118,722 - PfGW456L13_1005 0.37 -1.6 1,118,862 + PfGW456L13_1005 0.69 +0.6 1,118,863 - PfGW456L13_1005 0.69 -0.3 1,118,863 - PfGW456L13_1005 0.69 +3.3 1,118,863 - PfGW456L13_1005 0.69 -0.1 1,118,863 - PfGW456L13_1005 0.69 -0.5 1,118,863 - PfGW456L13_1005 0.69 +0.3 1,118,863 - PfGW456L13_1005 0.69 -0.1 1,118,863 - PfGW456L13_1005 0.69 +0.8 1,118,883 + PfGW456L13_1005 0.74 +1.1 1,118,883 + PfGW456L13_1005 0.74 -0.1 1,118,883 + PfGW456L13_1005 0.74 +1.3 1,118,884 - PfGW456L13_1005 0.74 -0.4 1,118,884 - PfGW456L13_1005 0.74 -0.2 1,118,884 - PfGW456L13_1005 0.74 -0.0 1,118,884 - PfGW456L13_1005 0.74 -0.4 1,118,884 - PfGW456L13_1005 0.74 +1.6 1,118,884 - PfGW456L13_1005 0.74 -1.5 1,118,884 - PfGW456L13_1005 0.74 +0.1 1,118,972 + -0.0 1,118,973 - +0.3 1,118,973 - +2.3 1,118,984 + -0.6 1,119,013 + -0.2 1,119,013 + -1.4 1,119,014 - +0.7 1,119,068 + -4.1 1,119,068 + -3.7 1,119,069 - -3.4 1,119,069 - -2.9 1,119,069 - -2.7 1,119,072 + -3.8 1,119,073 - -2.4 1,119,085 + PfGW456L13_1006 0.10 -0.4 1,119,086 - PfGW456L13_1006 0.10 -3.0 1,119,093 + PfGW456L13_1006 0.11 -2.1 1,119,100 + PfGW456L13_1006 0.13 -3.7 1,119,100 + PfGW456L13_1006 0.13 -0.4 1,119,100 + PfGW456L13_1006 0.13 -4.0 1,119,100 + PfGW456L13_1006 0.13 -2.8 1,119,100 + PfGW456L13_1006 0.13 -2.2 1,119,101 - PfGW456L13_1006 0.13 -2.0 1,119,101 - PfGW456L13_1006 0.13 -3.6 1,119,101 - PfGW456L13_1006 0.13 -3.4 1,119,101 - PfGW456L13_1006 0.13 -0.3 1,119,227 + PfGW456L13_1006 0.33 -3.4 1,119,236 + PfGW456L13_1006 0.34 -2.9 1,119,281 + PfGW456L13_1006 0.42 -4.3 1,119,658 + -4.0 1,119,658 + -3.8 1,119,658 + -4.1 1,119,658 + -1.3 1,119,659 - -0.3 1,119,659 - +0.1 1,119,672 + -2.3 1,119,672 + -2.5 1,119,672 + -3.3 1,119,672 + -1.0 1,119,672 + -3.2 1,119,672 + -3.5 1,119,673 - -2.2 1,119,673 - -1.3 1,119,673 - -2.3 1,119,673 - -0.9 1,119,673 - -3.8 1,119,673 - -3.5 1,119,912 + PfGW456L13_1007 0.23 -3.3 1,119,939 + PfGW456L13_1007 0.25 -4.4 1,119,990 + PfGW456L13_1007 0.30 -1.7 1,119,990 + PfGW456L13_1007 0.30 -3.5 1,119,990 + PfGW456L13_1007 0.30 -3.6 1,119,990 + PfGW456L13_1007 0.30 -2.5 1,120,026 + PfGW456L13_1007 0.33 -3.3 1,120,027 - PfGW456L13_1007 0.33 -1.8 1,120,027 - PfGW456L13_1007 0.33 -1.7 1,120,027 - PfGW456L13_1007 0.33 -3.2 1,120,089 + PfGW456L13_1007 0.39 -2.7 1,120,089 + PfGW456L13_1007 0.39 -4.6 1,120,089 + PfGW456L13_1007 0.39 -3.7 1,120,089 + PfGW456L13_1007 0.39 -3.9 1,120,089 + PfGW456L13_1007 0.39 -2.8 1,120,090 - PfGW456L13_1007 0.39 -3.9 1,120,090 - PfGW456L13_1007 0.39 -2.8 1,120,281 + PfGW456L13_1007 0.55 -2.0 1,120,281 + PfGW456L13_1007 0.55 -2.2 1,120,281 + PfGW456L13_1007 0.55 -4.6 1,120,281 + PfGW456L13_1007 0.55 -2.9 1,120,282 - PfGW456L13_1007 0.55 -3.3 1,120,282 - PfGW456L13_1007 0.55 -1.1 1,120,282 - PfGW456L13_1007 0.55 -2.5 1,120,406 + PfGW456L13_1007 0.66 -3.3 1,120,665 + PfGW456L13_1007 0.89 -3.7 1,120,665 + PfGW456L13_1007 0.89 -2.3 1,120,666 - PfGW456L13_1007 0.89 -0.7 1,120,666 - PfGW456L13_1007 0.89 -3.3 1,120,666 - PfGW456L13_1007 0.89 -2.9 1,120,674 + PfGW456L13_1007 0.90 -2.8 1,120,674 + PfGW456L13_1007 0.90 -2.8 1,120,674 + PfGW456L13_1007 0.90 -2.7 1,120,674 + PfGW456L13_1007 0.90 -4.2 1,120,675 - PfGW456L13_1007 0.90 -3.7 1,120,675 - PfGW456L13_1007 0.90 -3.5 1,120,675 - PfGW456L13_1007 0.90 -4.1 1,120,686 + -3.3 1,120,687 - -3.2 1,120,752 - -2.1 1,120,817 + -3.2 1,120,817 + -3.6 1,120,817 + -2.2 1,120,817 + -2.4 1,120,817 + -1.6 1,120,818 - -0.6 1,120,818 - +0.5 1,120,818 - +0.3 1,120,818 - -0.3 1,120,818 - -0.3 1,120,823 + -1.7 1,120,824 - +1.0 1,120,824 - -0.1 1,121,119 + PfGW456L13_1008 0.50 +0.3 1,121,119 + PfGW456L13_1008 0.50 -0.3 1,121,119 + PfGW456L13_1008 0.50 -0.4 1,121,119 + PfGW456L13_1008 0.50 +0.2 1,121,120 - PfGW456L13_1008 0.50 +0.2 1,121,120 - PfGW456L13_1008 0.50 +0.4 1,121,120 - PfGW456L13_1008 0.50 +0.5 1,121,467 - PfGW456L13_1009 0.33 -0.6 1,121,678 - PfGW456L13_1009 0.69 -0.0 1,121,753 + PfGW456L13_1009 0.81 -0.8 1,121,753 + PfGW456L13_1009 0.81 -0.3 1,121,754 - PfGW456L13_1009 0.82 -1.5 1,121,779 + PfGW456L13_1009 0.86 -2.2
Or see this region's nucleotide sequence