Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS30525

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
1,826,305	+		PFLU_RS30520	0.13	-2.9
1,826,331	+		PFLU_RS30520	0.15	-2.5
1,826,332	-		PFLU_RS30520	0.15	-3.0
1,826,399	-		PFLU_RS30520	0.21	-1.9
1,826,405	-		PFLU_RS30520	0.22	+2.2
1,826,426	-		PFLU_RS30520	0.24	-1.2
1,826,450	+		PFLU_RS30520	0.26	-2.2
1,826,607	+		PFLU_RS30520	0.41	-2.5
1,826,607	+		PFLU_RS30520	0.41	+1.5
1,826,620	+		PFLU_RS30520	0.42	+2.1
1,826,630	-		PFLU_RS30520	0.43	-1.4
1,826,732	-		PFLU_RS30520	0.52	-2.2
1,826,844	-		PFLU_RS30520	0.62	+0.9
1,826,852	+		PFLU_RS30520	0.63	-2.3
1,826,853	-		PFLU_RS30520	0.63	-2.0
1,826,853	-		PFLU_RS30520	0.63	-2.1
1,826,958	-		PFLU_RS30520	0.73	+0.3
1,827,088	+		PFLU_RS30520	0.85	+0.4
1,827,089	-		PFLU_RS30520	0.85	+0.8
1,827,089	-		PFLU_RS30520	0.85	-2.6
1,827,089	-		PFLU_RS30520	0.85	-0.9
1,827,175	+				-2.7
1,827,175	+				-2.3
1,827,175	+				-0.1
1,827,176	-				-0.8
1,827,176	-				-1.0
1,827,176	-				-0.5
1,827,176	-				+0.5
1,827,222	+				+0.2
1,827,222	+				+0.4
1,827,222	+				+1.2
1,827,222	+				-3.0
1,827,222	+				-2.7
1,827,222	+				+0.3
1,827,222	+				-2.5
1,827,222	+				-0.3
1,827,223	-				-0.2
1,827,223	-				-0.2
1,827,251	+				-2.0
1,827,280	-				-0.2
1,827,287	+				-2.7
1,827,287	+				+0.4
1,827,287	+				-2.2
1,827,287	+				-2.3
1,827,287	+				-1.2
1,827,287	+				-1.8
1,827,288	-				-1.0
1,827,288	-				-0.7
1,827,315	-				+0.4
1,827,354	+		PFLU_RS30525	0.14	-2.0
1,827,354	+		PFLU_RS30525	0.14	-1.4
1,827,355	-		PFLU_RS30525	0.14	-0.7
1,827,355	-		PFLU_RS30525	0.14	+0.5
1,827,378	+		PFLU_RS30525	0.17	+0.2
1,827,378	+		PFLU_RS30525	0.17	+0.8
1,827,379	-		PFLU_RS30525	0.17	+0.5
1,827,379	-		PFLU_RS30525	0.17	-0.5
1,827,379	-		PFLU_RS30525	0.17	-1.4
1,827,405	+		PFLU_RS30525	0.20	-1.5
1,827,418	-		PFLU_RS30525	0.22	+0.2
1,827,427	-		PFLU_RS30525	0.23	-0.4
1,827,432	-		PFLU_RS30525	0.24	-1.2
1,827,432	-		PFLU_RS30525	0.24	-2.4
1,827,533	+		PFLU_RS30525	0.37	-1.0
1,827,533	+		PFLU_RS30525	0.37	-1.6
1,827,533	+		PFLU_RS30525	0.37	-2.9
1,827,552	-		PFLU_RS30525	0.40	+0.2
1,827,599	+		PFLU_RS30525	0.46	-2.6
1,827,600	-		PFLU_RS30525	0.46	+0.6
1,827,600	-		PFLU_RS30525	0.46	-0.2
1,827,618	-		PFLU_RS30525	0.48	+1.0
1,827,645	-		PFLU_RS30525	0.52	+0.6
1,827,648	+		PFLU_RS30525	0.52	-3.3
1,827,648	+		PFLU_RS30525	0.52	-1.0
1,827,648	+		PFLU_RS30525	0.52	-2.1
1,827,649	-		PFLU_RS30525	0.53	-0.6
1,827,649	-		PFLU_RS30525	0.53	-0.8
1,827,649	-		PFLU_RS30525	0.53	+1.5
1,827,649	-		PFLU_RS30525	0.53	-1.2
1,827,649	-		PFLU_RS30525	0.53	-2.1
1,827,654	-		PFLU_RS30525	0.53	+1.8
1,827,654	-		PFLU_RS30525	0.53	-2.5
1,827,673	-		PFLU_RS30525	0.56	-2.3
1,827,767	+		PFLU_RS30525	0.68	-1.4
1,827,773	+		PFLU_RS30525	0.69	-2.2
1,827,773	+		PFLU_RS30525	0.69	-2.5
1,827,774	-		PFLU_RS30525	0.69	+1.5
1,827,774	-		PFLU_RS30525	0.69	-1.2
1,827,774	-		PFLU_RS30525	0.69	-1.2
1,827,875	+		PFLU_RS30525	0.82	+0.2
1,827,897	-		PFLU_RS30525	0.85	-1.9
1,827,920	+		PFLU_RS30525	0.88	-2.9
1,827,921	-		PFLU_RS30525	0.88	-2.7
1,827,921	-		PFLU_RS30525	0.88	-0.8
1,827,921	-		PFLU_RS30525	0.88	-1.8
1,827,925	+		PFLU_RS30525	0.89	-2.7
1,827,926	-		PFLU_RS30525	0.89	-1.4
1,827,933	+				-0.5
1,827,934	-				-0.2
1,827,937	+				-2.9
1,827,937	+				-1.5
1,827,938	-				+0.8
1,827,938	-				-0.7
1,827,938	-				-1.7
1,827,938	-				-2.5
1,827,980	+				-2.0
1,827,980	+				+1.2
1,827,981	-				-0.9
1,827,981	-				+0.6
1,828,024	+				-1.0
1,828,028	-				-1.0
1,828,028	-				+2.9
1,828,028	-				-3.0
1,828,028	-				-0.4
1,828,100	+		PFLU_RS30530	0.14	-0.8
1,828,101	-		PFLU_RS30530	0.14	-0.5
1,828,101	-		PFLU_RS30530	0.14	+0.8
1,828,101	-		PFLU_RS30530	0.14	-0.1
1,828,107	-		PFLU_RS30530	0.15	+1.5
1,828,118	+		PFLU_RS30530	0.17	-0.7
1,828,166	+		PFLU_RS30530	0.24	-0.5
1,828,187	+		PFLU_RS30530	0.27	+0.2
1,828,188	-		PFLU_RS30530	0.27	+0.2
1,828,188	-		PFLU_RS30530	0.27	+0.3
1,828,227	-		PFLU_RS30530	0.33	-1.4
1,828,230	+		PFLU_RS30530	0.34	-2.8
1,828,230	+		PFLU_RS30530	0.34	-3.2
1,828,230	+		PFLU_RS30530	0.34	-2.1
1,828,231	-		PFLU_RS30530	0.34	+0.4
1,828,231	-		PFLU_RS30530	0.34	-1.0
1,828,237	+		PFLU_RS30530	0.35	-1.9
1,828,238	-		PFLU_RS30530	0.35	+1.4
1,828,343	+		PFLU_RS30530	0.51	-1.0
1,828,370	+		PFLU_RS30530	0.55	+0.2
1,828,413	-		PFLU_RS30530	0.61	+1.5
1,828,426	+		PFLU_RS30530	0.63	-1.4
1,828,476	-		PFLU_RS30530	0.71	-0.8
1,828,553	+		PFLU_RS30530	0.82	-1.2
1,828,559	+		PFLU_RS30530	0.83	-2.3
1,828,564	+		PFLU_RS30530	0.84	+0.2
1,828,564	+		PFLU_RS30530	0.84	+0.2
1,828,565	-		PFLU_RS30530	0.84	-1.7
1,828,578	+		PFLU_RS30530	0.86	-3.1
1,828,578	+		PFLU_RS30530	0.86	-2.0
1,828,604	-				-2.0
1,828,693	+				-0.5
1,828,708	-				-1.4
1,828,708	-				+0.2
1,828,725	-				+0.5
1,828,803	-		PFLU_RS08180	0.13	-2.1
1,828,910	+		PFLU_RS08180	0.23	+0.2
1,828,915	+		PFLU_RS08180	0.24	-2.3
1,828,915	+		PFLU_RS08180	0.24	-2.9
1,828,916	-		PFLU_RS08180	0.24	-0.8
1,828,916	-		PFLU_RS08180	0.24	-0.8
1,828,916	-		PFLU_RS08180	0.24	-0.1
1,828,916	-		PFLU_RS08180	0.24	-0.0
1,828,935	+		PFLU_RS08180	0.26	-1.0
1,828,936	-		PFLU_RS08180	0.26	+0.2
1,828,958	+		PFLU_RS08180	0.28	+0.6
1,828,958	+		PFLU_RS08180	0.28	-0.7
1,828,959	-		PFLU_RS08180	0.28	-0.2