Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS29880

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
6,643,742	-		PFLU_RS29875	0.54	-0.7
6,643,742	-		PFLU_RS29875	0.54	-2.5
6,643,742	-		PFLU_RS29875	0.54	+0.3
6,643,742	-		PFLU_RS29875	0.54	-2.8
6,643,759	+		PFLU_RS29875	0.55	-3.4
6,643,759	+		PFLU_RS29875	0.55	+1.1
6,643,759	+		PFLU_RS29875	0.55	-1.9
6,643,759	+		PFLU_RS29875	0.55	-1.7
6,643,760	-		PFLU_RS29875	0.55	-4.4
6,643,765	+		PFLU_RS29875	0.55	-3.0
6,643,765	+		PFLU_RS29875	0.55	-1.5
6,643,765	+		PFLU_RS29875	0.55	-3.3
6,643,765	+		PFLU_RS29875	0.55	-3.3
6,643,766	-		PFLU_RS29875	0.55	-2.0
6,643,766	-		PFLU_RS29875	0.55	-3.4
6,643,766	-		PFLU_RS29875	0.55	+0.5
6,643,766	-		PFLU_RS29875	0.55	-3.8
6,643,824	-		PFLU_RS29875	0.59	-3.7
6,644,137	+		PFLU_RS29875	0.76	-2.5
6,644,137	+		PFLU_RS29875	0.76	-3.4
6,644,138	-		PFLU_RS29875	0.76	-2.7
6,644,138	-		PFLU_RS29875	0.76	-3.1
6,644,235	+		PFLU_RS29875	0.81	-1.7
6,644,235	+		PFLU_RS29875	0.81	-2.9
6,644,235	+		PFLU_RS29875	0.81	-1.0
6,644,235	+		PFLU_RS29875	0.81	-3.5
6,644,236	-		PFLU_RS29875	0.81	-3.5
6,644,236	-		PFLU_RS29875	0.81	-3.8
6,644,236	-		PFLU_RS29875	0.81	-3.4
6,644,294	-		PFLU_RS29875	0.85	-2.3
6,644,452	+				-3.1
6,644,658	+				-2.7
6,644,658	+				+0.1
6,644,658	+				-2.6
6,644,658	+				-2.4
6,644,658	+				-3.7
6,644,659	-				-0.2
6,644,659	-				+0.8
6,644,659	-				-3.5
6,644,742	+		PFLU_RS29880	0.11	-3.1
6,644,742	+		PFLU_RS29880	0.11	-3.9
6,644,742	+		PFLU_RS29880	0.11	-0.6
6,644,745	+		PFLU_RS29880	0.11	-3.9
6,644,745	+		PFLU_RS29880	0.11	-1.9
6,644,745	+		PFLU_RS29880	0.11	-0.6
6,644,746	-		PFLU_RS29880	0.11	-3.9
6,644,862	+		PFLU_RS29880	0.20	-2.7
6,644,862	+		PFLU_RS29880	0.20	-0.9
6,644,862	+		PFLU_RS29880	0.20	-2.3
6,644,862	+		PFLU_RS29880	0.20	+0.4
6,644,863	-		PFLU_RS29880	0.20	-2.1
6,644,880	+		PFLU_RS29880	0.21	-2.4
6,644,889	+		PFLU_RS29880	0.21	-2.9
6,644,889	+		PFLU_RS29880	0.21	-1.1
6,644,889	+		PFLU_RS29880	0.21	-2.7
6,644,889	+		PFLU_RS29880	0.21	-3.6
6,644,889	+		PFLU_RS29880	0.21	-3.4
6,644,889	+		PFLU_RS29880	0.21	+0.4
6,644,889	+		PFLU_RS29880	0.21	-2.0
6,644,889	+		PFLU_RS29880	0.21	+2.0
6,644,889	+		PFLU_RS29880	0.21	-0.4
6,644,889	+		PFLU_RS29880	0.21	-1.3
6,644,889	+		PFLU_RS29880	0.21	-3.1
6,644,889	+		PFLU_RS29880	0.21	-2.9
6,644,889	+		PFLU_RS29880	0.21	-1.9
6,644,890	-		PFLU_RS29880	0.22	-2.6
6,644,890	-		PFLU_RS29880	0.22	-3.4
6,644,890	-		PFLU_RS29880	0.22	-2.0
6,644,890	-		PFLU_RS29880	0.22	-1.4
6,644,890	-		PFLU_RS29880	0.22	-0.2
6,644,890	-		PFLU_RS29880	0.22	-3.1
6,644,931	+		PFLU_RS29880	0.24	-4.2
6,644,931	+		PFLU_RS29880	0.24	-4.0
6,644,931	+		PFLU_RS29880	0.24	-2.5
6,644,931	+		PFLU_RS29880	0.24	-2.3
6,644,931	+		PFLU_RS29880	0.24	-1.5
6,644,932	-		PFLU_RS29880	0.25	-2.5
6,644,932	-		PFLU_RS29880	0.25	-2.8
6,644,932	-		PFLU_RS29880	0.25	-1.6
6,644,932	-		PFLU_RS29880	0.25	-4.4
6,644,932	-		PFLU_RS29880	0.25	-3.0
6,644,932	-		PFLU_RS29880	0.25	-0.2
6,644,932	-		PFLU_RS29880	0.25	-0.9
6,644,934	+		PFLU_RS29880	0.25	-2.7
6,644,934	+		PFLU_RS29880	0.25	-3.3
6,644,935	-		PFLU_RS29880	0.25	-1.5
6,644,935	-		PFLU_RS29880	0.25	+0.8
6,645,025	+		PFLU_RS29880	0.31	-0.8
6,645,025	+		PFLU_RS29880	0.31	-4.0
6,645,025	+		PFLU_RS29880	0.31	-1.7
6,645,026	-		PFLU_RS29880	0.31	-3.7
6,645,026	-		PFLU_RS29880	0.31	-0.7
6,645,153	+		PFLU_RS29880	0.40	-3.0
6,645,153	+		PFLU_RS29880	0.40	-2.0
6,645,153	+		PFLU_RS29880	0.40	-2.3
6,645,153	+		PFLU_RS29880	0.40	-3.5
6,645,153	+		PFLU_RS29880	0.40	-1.9
6,645,153	+		PFLU_RS29880	0.40	-3.3
6,645,153	+		PFLU_RS29880	0.40	-3.3
6,645,154	-		PFLU_RS29880	0.40	-0.5
6,645,154	-		PFLU_RS29880	0.40	-2.3
6,645,154	-		PFLU_RS29880	0.40	-0.8
6,645,154	-		PFLU_RS29880	0.40	-2.6
6,645,154	-		PFLU_RS29880	0.40	-3.1
6,645,154	-		PFLU_RS29880	0.40	-0.7
6,645,154	-		PFLU_RS29880	0.40	-1.4
6,645,154	-		PFLU_RS29880	0.40	-2.3
6,645,154	-		PFLU_RS29880	0.40	-4.0
6,645,154	-		PFLU_RS29880	0.40	-2.6
6,645,202	-		PFLU_RS29880	0.44	-1.9
6,645,243	+		PFLU_RS29880	0.46	-4.1
6,645,243	+		PFLU_RS29880	0.46	-3.3
6,645,243	+		PFLU_RS29880	0.46	-2.0
6,645,243	+		PFLU_RS29880	0.46	+0.3
6,645,244	-		PFLU_RS29880	0.47	-3.2
6,645,244	-		PFLU_RS29880	0.47	-3.2
6,645,244	-		PFLU_RS29880	0.47	-0.5
6,645,244	-		PFLU_RS29880	0.47	-4.3
6,645,553	+		PFLU_RS29880	0.68	-1.2
6,645,907	-				-3.4
6,645,907	-				-3.9
6,645,957	-				-2.6
6,645,996	-				-3.3
6,646,041	+				-3.9
6,646,042	-				+1.7
6,646,042	-				+1.8
6,646,096	+				-0.9
6,646,096	+				-3.6
6,646,096	+				-1.1
6,646,148	+				+1.1
6,646,200	+				-3.9
6,646,267	+				-1.3
6,646,267	+				-2.9
6,646,267	+				-3.4
6,646,268	-				-0.9
6,646,312	-		PFLU_RS29885	0.12	-2.4
6,646,317	-		PFLU_RS29885	0.13	-2.5
6,646,363	+		PFLU_RS29885	0.17	-3.6
6,646,363	+		PFLU_RS29885	0.17	-0.5
6,646,363	+		PFLU_RS29885	0.17	-2.4
6,646,363	+		PFLU_RS29885	0.17	-2.4
6,646,364	-		PFLU_RS29885	0.17	-2.7
6,646,364	-		PFLU_RS29885	0.17	-1.2
6,646,364	-		PFLU_RS29885	0.17	-1.1
6,646,381	+		PFLU_RS29885	0.19	-3.0
6,646,381	+		PFLU_RS29885	0.19	-1.8
6,646,381	+		PFLU_RS29885	0.19	-2.0
6,646,382	-		PFLU_RS29885	0.19	+0.2
6,646,382	-		PFLU_RS29885	0.19	-2.3
6,646,382	-		PFLU_RS29885	0.19	-2.4
6,646,452	+		PFLU_RS29885	0.26	-0.0
6,646,522	+		PFLU_RS29885	0.34	-1.5
6,646,522	+		PFLU_RS29885	0.34	-2.7
6,646,522	+		PFLU_RS29885	0.34	-1.9
6,646,523	-		PFLU_RS29885	0.34	-2.8
6,646,523	-		PFLU_RS29885	0.34	-3.2
6,646,523	-		PFLU_RS29885	0.34	-0.5
6,646,523	-		PFLU_RS29885	0.34	+3.0
6,646,523	-		PFLU_RS29885	0.34	-3.7
6,646,523	-		PFLU_RS29885	0.34	-3.2
6,646,594	-		PFLU_RS29885	0.41	-2.3
6,646,696	-		PFLU_RS29885	0.51	-3.8
6,646,696	-		PFLU_RS29885	0.51	-3.3
6,646,777	+		PFLU_RS29885	0.60	+0.1
6,646,777	+		PFLU_RS29885	0.60	-1.2
6,646,777	+		PFLU_RS29885	0.60	-2.9
6,646,777	+		PFLU_RS29885	0.60	-3.2
6,646,778	-		PFLU_RS29885	0.60	-3.3
6,646,778	-		PFLU_RS29885	0.60	-3.8
6,646,831	+		PFLU_RS29885	0.65	-3.2
6,646,831	+		PFLU_RS29885	0.65	-3.8
6,646,832	-		PFLU_RS29885	0.65	-2.1
6,646,832	-		PFLU_RS29885	0.65	-2.7
6,646,832	-		PFLU_RS29885	0.65	-0.6
6,646,832	-		PFLU_RS29885	0.65	-2.0
6,646,832	-		PFLU_RS29885	0.65	-1.4
6,646,905	-		PFLU_RS29885	0.73	-4.0