Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS29875

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
6,642,124	-		PFLU_RS29870	0.56	+0.6
6,642,171	+		PFLU_RS29870	0.60	+0.0
6,642,171	+		PFLU_RS29870	0.60	-0.4
6,642,171	+		PFLU_RS29870	0.60	+1.7
6,642,171	+		PFLU_RS29870	0.60	-2.6
6,642,171	+		PFLU_RS29870	0.60	-0.1
6,642,172	-		PFLU_RS29870	0.60	+0.2
6,642,172	-		PFLU_RS29870	0.60	+1.2
6,642,172	-		PFLU_RS29870	0.60	+0.4
6,642,172	-		PFLU_RS29870	0.60	+0.2
6,642,172	-		PFLU_RS29870	0.60	-0.3
6,642,172	-		PFLU_RS29870	0.60	-1.8
6,642,194	+		PFLU_RS29870	0.62	-1.2
6,642,194	+		PFLU_RS29870	0.62	-1.7
6,642,194	+		PFLU_RS29870	0.62	+0.2
6,642,194	+		PFLU_RS29870	0.62	+0.5
6,642,195	-		PFLU_RS29870	0.62	-0.2
6,642,195	-		PFLU_RS29870	0.62	-0.4
6,642,195	-		PFLU_RS29870	0.62	+1.3
6,642,195	-		PFLU_RS29870	0.62	+2.1
6,642,233	+		PFLU_RS29870	0.65	+0.5
6,642,401	+		PFLU_RS29870	0.78	-0.1
6,642,402	-		PFLU_RS29870	0.78	-2.7
6,642,556	+		PFLU_RS29870	0.90	-1.6
6,642,557	-		PFLU_RS29870	0.90	-1.3
6,642,620	+				-1.5
6,642,620	+				-1.0
6,642,620	+				-0.9
6,642,620	+				-0.4
6,642,621	-				-1.2
6,642,621	-				-0.4
6,642,686	+				+0.2
6,642,687	-				-0.1
6,642,687	-				+1.2
6,642,741	+				+0.2
6,642,742	-				-1.5
6,643,075	+		PFLU_RS29875	0.17	-1.1
6,643,075	+		PFLU_RS29875	0.17	-3.4
6,643,075	+		PFLU_RS29875	0.17	-2.4
6,643,075	+		PFLU_RS29875	0.17	-2.9
6,643,075	+		PFLU_RS29875	0.17	-0.9
6,643,075	+		PFLU_RS29875	0.17	-2.9
6,643,076	-		PFLU_RS29875	0.17	-1.6
6,643,076	-		PFLU_RS29875	0.17	-3.0
6,643,076	-		PFLU_RS29875	0.17	-2.1
6,643,076	-		PFLU_RS29875	0.17	-3.4
6,643,076	-		PFLU_RS29875	0.17	-4.1
6,643,076	-		PFLU_RS29875	0.17	-1.8
6,643,130	-		PFLU_RS29875	0.20	-2.5
6,643,143	+		PFLU_RS29875	0.21	-0.2
6,643,143	+		PFLU_RS29875	0.21	-1.9
6,643,143	+		PFLU_RS29875	0.21	-1.5
6,643,143	+		PFLU_RS29875	0.21	-1.9
6,643,144	-		PFLU_RS29875	0.21	-2.0
6,643,144	-		PFLU_RS29875	0.21	-1.8
6,643,144	-		PFLU_RS29875	0.21	-1.9
6,643,291	+		PFLU_RS29875	0.29	-3.5
6,643,291	+		PFLU_RS29875	0.29	-3.1
6,643,291	+		PFLU_RS29875	0.29	-1.6
6,643,292	-		PFLU_RS29875	0.29	-2.6
6,643,292	-		PFLU_RS29875	0.29	-3.1
6,643,292	-		PFLU_RS29875	0.29	-2.6
6,643,292	-		PFLU_RS29875	0.29	-4.5
6,643,292	-		PFLU_RS29875	0.29	-1.8
6,643,380	+		PFLU_RS29875	0.34	-2.3
6,643,380	+		PFLU_RS29875	0.34	-3.0
6,643,380	+		PFLU_RS29875	0.34	-1.4
6,643,380	+		PFLU_RS29875	0.34	-1.2
6,643,381	-		PFLU_RS29875	0.34	-3.4
6,643,381	-		PFLU_RS29875	0.34	-1.7
6,643,381	-		PFLU_RS29875	0.34	-2.5
6,643,381	-		PFLU_RS29875	0.34	-1.8
6,643,381	-		PFLU_RS29875	0.34	-3.4
6,643,468	+		PFLU_RS29875	0.39	-2.6
6,643,468	+		PFLU_RS29875	0.39	-1.9
6,643,469	-		PFLU_RS29875	0.39	-1.4
6,643,469	-		PFLU_RS29875	0.39	-1.6
6,643,469	-		PFLU_RS29875	0.39	-2.9
6,643,498	+		PFLU_RS29875	0.41	-1.5
6,643,498	+		PFLU_RS29875	0.41	-3.3
6,643,499	-		PFLU_RS29875	0.41	-1.5
6,643,742	-		PFLU_RS29875	0.54	-0.7
6,643,742	-		PFLU_RS29875	0.54	-2.5
6,643,742	-		PFLU_RS29875	0.54	+0.3
6,643,742	-		PFLU_RS29875	0.54	-2.8
6,643,759	+		PFLU_RS29875	0.55	-3.4
6,643,759	+		PFLU_RS29875	0.55	+1.1
6,643,759	+		PFLU_RS29875	0.55	-1.9
6,643,759	+		PFLU_RS29875	0.55	-1.7
6,643,760	-		PFLU_RS29875	0.55	-4.4
6,643,765	+		PFLU_RS29875	0.55	-3.0
6,643,765	+		PFLU_RS29875	0.55	-1.5
6,643,765	+		PFLU_RS29875	0.55	-3.3
6,643,765	+		PFLU_RS29875	0.55	-3.3
6,643,766	-		PFLU_RS29875	0.55	-2.0
6,643,766	-		PFLU_RS29875	0.55	-3.4
6,643,766	-		PFLU_RS29875	0.55	+0.5
6,643,766	-		PFLU_RS29875	0.55	-3.8
6,643,824	-		PFLU_RS29875	0.59	-3.7
6,644,137	+		PFLU_RS29875	0.76	-2.5
6,644,137	+		PFLU_RS29875	0.76	-3.4
6,644,138	-		PFLU_RS29875	0.76	-2.7
6,644,138	-		PFLU_RS29875	0.76	-3.1
6,644,235	+		PFLU_RS29875	0.81	-1.7
6,644,235	+		PFLU_RS29875	0.81	-2.9
6,644,235	+		PFLU_RS29875	0.81	-1.0
6,644,235	+		PFLU_RS29875	0.81	-3.5
6,644,236	-		PFLU_RS29875	0.81	-3.5
6,644,236	-		PFLU_RS29875	0.81	-3.8
6,644,236	-		PFLU_RS29875	0.81	-3.4
6,644,294	-		PFLU_RS29875	0.85	-2.3
6,644,452	+				-3.1
6,644,658	+				-2.7
6,644,658	+				+0.1
6,644,658	+				-2.6
6,644,658	+				-2.4
6,644,658	+				-3.7
6,644,659	-				-0.2
6,644,659	-				+0.8
6,644,659	-				-3.5
6,644,742	+		PFLU_RS29880	0.11	-3.1
6,644,742	+		PFLU_RS29880	0.11	-3.9
6,644,742	+		PFLU_RS29880	0.11	-0.6
6,644,745	+		PFLU_RS29880	0.11	-3.9
6,644,745	+		PFLU_RS29880	0.11	-1.9
6,644,745	+		PFLU_RS29880	0.11	-0.6
6,644,746	-		PFLU_RS29880	0.11	-3.9
6,644,862	+		PFLU_RS29880	0.20	-2.7
6,644,862	+		PFLU_RS29880	0.20	-0.9
6,644,862	+		PFLU_RS29880	0.20	-2.3
6,644,862	+		PFLU_RS29880	0.20	+0.4
6,644,863	-		PFLU_RS29880	0.20	-2.1
6,644,880	+		PFLU_RS29880	0.21	-2.4
6,644,889	+		PFLU_RS29880	0.21	-2.9
6,644,889	+		PFLU_RS29880	0.21	-1.1
6,644,889	+		PFLU_RS29880	0.21	-2.7
6,644,889	+		PFLU_RS29880	0.21	-3.6
6,644,889	+		PFLU_RS29880	0.21	-3.4
6,644,889	+		PFLU_RS29880	0.21	+0.4
6,644,889	+		PFLU_RS29880	0.21	-2.0
6,644,889	+		PFLU_RS29880	0.21	+2.0
6,644,889	+		PFLU_RS29880	0.21	-0.4
6,644,889	+		PFLU_RS29880	0.21	-1.3
6,644,889	+		PFLU_RS29880	0.21	-3.1
6,644,889	+		PFLU_RS29880	0.21	-2.9
6,644,889	+		PFLU_RS29880	0.21	-1.9
6,644,890	-		PFLU_RS29880	0.22	-2.6
6,644,890	-		PFLU_RS29880	0.22	-3.4
6,644,890	-		PFLU_RS29880	0.22	-2.0
6,644,890	-		PFLU_RS29880	0.22	-1.4
6,644,890	-		PFLU_RS29880	0.22	-0.2
6,644,890	-		PFLU_RS29880	0.22	-3.1
6,644,931	+		PFLU_RS29880	0.24	-4.2
6,644,931	+		PFLU_RS29880	0.24	-4.0
6,644,931	+		PFLU_RS29880	0.24	-2.5
6,644,931	+		PFLU_RS29880	0.24	-2.3
6,644,931	+		PFLU_RS29880	0.24	-1.5
6,644,932	-		PFLU_RS29880	0.25	-2.5
6,644,932	-		PFLU_RS29880	0.25	-2.8
6,644,932	-		PFLU_RS29880	0.25	-1.6
6,644,932	-		PFLU_RS29880	0.25	-4.4
6,644,932	-		PFLU_RS29880	0.25	-3.0
6,644,932	-		PFLU_RS29880	0.25	-0.2
6,644,932	-		PFLU_RS29880	0.25	-0.9
6,644,934	+		PFLU_RS29880	0.25	-2.7
6,644,934	+		PFLU_RS29880	0.25	-3.3
6,644,935	-		PFLU_RS29880	0.25	-1.5
6,644,935	-		PFLU_RS29880	0.25	+0.8
6,645,025	+		PFLU_RS29880	0.31	-0.8
6,645,025	+		PFLU_RS29880	0.31	-4.0
6,645,025	+		PFLU_RS29880	0.31	-1.7
6,645,026	-		PFLU_RS29880	0.31	-3.7
6,645,026	-		PFLU_RS29880	0.31	-0.7
6,645,153	+		PFLU_RS29880	0.40	-3.0
6,645,153	+		PFLU_RS29880	0.40	-2.0
6,645,153	+		PFLU_RS29880	0.40	-2.3
6,645,153	+		PFLU_RS29880	0.40	-3.5
6,645,153	+		PFLU_RS29880	0.40	-1.9
6,645,153	+		PFLU_RS29880	0.40	-3.3
6,645,153	+		PFLU_RS29880	0.40	-3.3
6,645,154	-		PFLU_RS29880	0.40	-0.5
6,645,154	-		PFLU_RS29880	0.40	-2.3
6,645,154	-		PFLU_RS29880	0.40	-0.8
6,645,154	-		PFLU_RS29880	0.40	-2.6
6,645,154	-		PFLU_RS29880	0.40	-3.1
6,645,154	-		PFLU_RS29880	0.40	-0.7
6,645,154	-		PFLU_RS29880	0.40	-1.4
6,645,154	-		PFLU_RS29880	0.40	-2.3
6,645,154	-		PFLU_RS29880	0.40	-4.0
6,645,154	-		PFLU_RS29880	0.40	-2.6
6,645,202	-		PFLU_RS29880	0.44	-1.9
6,645,243	+		PFLU_RS29880	0.46	-4.1
6,645,243	+		PFLU_RS29880	0.46	-3.3
6,645,243	+		PFLU_RS29880	0.46	-2.0
6,645,243	+		PFLU_RS29880	0.46	+0.3
6,645,244	-		PFLU_RS29880	0.47	-3.2
6,645,244	-		PFLU_RS29880	0.47	-3.2
6,645,244	-		PFLU_RS29880	0.47	-0.5
6,645,244	-		PFLU_RS29880	0.47	-4.3
6,645,553	+		PFLU_RS29880	0.68	-1.2