Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS29735

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
6,607,390	+		PFLU_RS29730	0.76	+1.6
6,607,390	+		PFLU_RS29730	0.76	+0.8
6,607,390	+		PFLU_RS29730	0.76	-0.4
6,607,390	+		PFLU_RS29730	0.76	-0.7
6,607,390	+		PFLU_RS29730	0.76	+0.1
6,607,390	+		PFLU_RS29730	0.76	+1.2
6,607,391	-		PFLU_RS29730	0.76	-2.9
6,607,391	-		PFLU_RS29730	0.76	-0.5
6,607,391	-		PFLU_RS29730	0.76	+0.3
6,607,391	-		PFLU_RS29730	0.76	-0.4
6,607,391	-		PFLU_RS29730	0.76	+2.0
6,607,391	-		PFLU_RS29730	0.76	-0.3
6,607,391	-		PFLU_RS29730	0.76	+1.1
6,607,592	+				+0.0
6,607,593	-				+0.7
6,607,641	+				-0.2
6,607,641	+				+1.6
6,607,641	+				+0.3
6,607,641	+				+2.0
6,607,641	+				+1.5
6,607,641	+				+0.8
6,607,641	+				-0.6
6,607,642	-				+1.2
6,607,642	-				+1.7
6,607,642	-				+1.4
6,607,642	-				+0.2
6,607,642	-				-1.4
6,607,705	+				+1.7
6,607,719	+				+1.1
6,607,727	+				+0.1
6,607,727	+				-3.2
6,607,727	+				-0.5
6,607,727	+				-0.5
6,607,728	-				+0.1
6,607,728	-				+2.2
6,607,770	+				+1.3
6,607,770	+				-2.5
6,607,770	+				-1.2
6,607,770	+				-0.2
6,607,770	+				-0.7
6,607,770	+				+1.0
6,607,771	-				-1.1
6,607,771	-				-0.9
6,607,771	-				+0.0
6,607,771	-				-0.4
6,607,771	-				-0.4
6,607,771	-				+1.0
6,607,771	-				-0.1
6,607,771	-				+0.9
6,607,771	-				+0.6
6,607,771	-				+1.0
6,607,771	-				+0.2
6,607,771	-				+0.3
6,607,828	+				+0.4
6,607,841	+				+1.2
6,607,841	+				+1.7
6,607,842	-				-1.3
6,607,898	-				+0.1
6,607,944	+				-0.0
6,607,944	+				+0.1
6,607,944	+				-1.2
6,607,944	+				+1.8
6,607,944	+				-2.4
6,607,944	+				+0.7
6,607,944	+				-3.6
6,607,945	-				+1.4
6,607,945	-				-1.8
6,607,945	-				+1.4
6,607,945	-				-0.2
6,607,945	-				-1.6
6,607,945	-				+0.4
6,607,945	-				-3.3
6,608,053	-				-3.6
6,608,053	-				-1.9
6,608,186	+		PFLU_RS29735	0.16	-2.7
6,608,186	+		PFLU_RS29735	0.16	-2.1
6,608,187	-		PFLU_RS29735	0.16	-2.4
6,608,187	-		PFLU_RS29735	0.16	-1.7
6,608,354	+		PFLU_RS29735	0.28	+0.4
6,608,444	+		PFLU_RS29735	0.35	+0.3
6,608,444	+		PFLU_RS29735	0.35	-2.9
6,608,445	-		PFLU_RS29735	0.35	-2.8
6,608,445	-		PFLU_RS29735	0.35	+1.8
6,608,445	-		PFLU_RS29735	0.35	-2.7
6,608,453	+		PFLU_RS29735	0.36	-1.1
6,608,454	-		PFLU_RS29735	0.36	-1.4
6,608,454	-		PFLU_RS29735	0.36	-0.2
6,608,466	-		PFLU_RS29735	0.37	-2.8
6,608,466	-		PFLU_RS29735	0.37	-2.5
6,608,466	-		PFLU_RS29735	0.37	-2.3
6,608,477	+		PFLU_RS29735	0.37	-1.2
6,608,477	+		PFLU_RS29735	0.37	-2.4
6,608,477	+		PFLU_RS29735	0.37	-2.3
6,608,477	+		PFLU_RS29735	0.37	-0.2
6,608,478	-		PFLU_RS29735	0.37	-1.2
6,608,478	-		PFLU_RS29735	0.37	-0.7
6,608,555	+		PFLU_RS29735	0.43	-1.9
6,608,555	+		PFLU_RS29735	0.43	-2.3
6,608,556	-		PFLU_RS29735	0.43	+0.1
6,608,556	-		PFLU_RS29735	0.43	-2.9
6,608,556	-		PFLU_RS29735	0.43	-2.0
6,608,556	-		PFLU_RS29735	0.43	-0.8
6,608,628	+		PFLU_RS29735	0.49	-2.8
6,608,629	-		PFLU_RS29735	0.49	-1.7
6,608,753	-		PFLU_RS29735	0.58	-2.8
6,608,753	-		PFLU_RS29735	0.58	-2.5
6,608,774	+		PFLU_RS29735	0.60	-2.6
6,608,774	+		PFLU_RS29735	0.60	-2.3
6,608,774	+		PFLU_RS29735	0.60	-0.9
6,608,774	+		PFLU_RS29735	0.60	-3.6
6,608,774	+		PFLU_RS29735	0.60	-1.9
6,608,774	+		PFLU_RS29735	0.60	+0.8
6,608,774	+		PFLU_RS29735	0.60	-0.8
6,608,775	-		PFLU_RS29735	0.60	-1.3
6,608,775	-		PFLU_RS29735	0.60	-1.3
6,608,784	+		PFLU_RS29735	0.60	+0.2
6,608,784	+		PFLU_RS29735	0.60	-3.9
6,608,784	+		PFLU_RS29735	0.60	-1.9
6,608,785	-		PFLU_RS29735	0.60	-3.1
6,608,851	+		PFLU_RS29735	0.65	-1.1
6,608,851	+		PFLU_RS29735	0.65	-3.2
6,608,851	+		PFLU_RS29735	0.65	-1.6
6,608,852	-		PFLU_RS29735	0.65	+1.7
6,608,852	-		PFLU_RS29735	0.65	-0.2
6,608,852	-		PFLU_RS29735	0.65	-1.9
6,608,852	-		PFLU_RS29735	0.65	-0.8
6,608,852	-		PFLU_RS29735	0.65	-3.6
6,608,999	+		PFLU_RS29735	0.76	-3.2
6,609,194	+				-1.2
6,609,194	+				+0.2
6,609,194	+				-1.9
6,609,194	+				+0.7
6,609,194	+				-2.0
6,609,195	-				-3.6
6,609,195	-				-1.5
6,609,195	-				-0.6
6,609,288	+				-2.5
6,609,531	+		PFLU_RS29740	0.32	-1.1
6,609,531	+		PFLU_RS29740	0.32	+0.1
6,609,531	+		PFLU_RS29740	0.32	-0.0
6,609,531	+		PFLU_RS29740	0.32	+1.6
6,609,531	+		PFLU_RS29740	0.32	+0.3
6,609,532	-		PFLU_RS29740	0.32	+0.2
6,609,532	-		PFLU_RS29740	0.32	-0.0
6,609,532	-		PFLU_RS29740	0.32	+0.6
6,609,532	-		PFLU_RS29740	0.32	+0.9
6,609,560	+		PFLU_RS29740	0.36	+0.6
6,609,561	-		PFLU_RS29740	0.36	-0.7
6,609,561	-		PFLU_RS29740	0.36	+0.6
6,609,775	-		PFLU_RS29740	0.69	+1.2
6,609,785	+		PFLU_RS29740	0.70	-0.9
6,609,789	+		PFLU_RS29740	0.71	-2.3
6,609,790	-		PFLU_RS29740	0.71	-0.4
6,609,912	+		PFLU_RS29740	0.89	-2.3
6,609,968	+				-1.2
6,609,968	+				+0.6
6,609,969	-				-3.5
6,610,032	-				-2.9
6,610,032	-				-0.6
6,610,032	-				-1.2
6,610,041	-				-2.9
6,610,144	+				-0.1
6,610,144	+				+0.6
6,610,144	+				-1.1
6,610,144	+				-0.0
6,610,144	+				+0.8
6,610,145	-				+1.7
6,610,145	-				-0.8
6,610,145	-				+0.3
6,610,145	-				+0.5