Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS26625 and PFLU_RS26630 overlap by 1 nucleotides PFLU_RS26630 and PFLU_RS26635 are separated by 84 nucleotides PFLU_RS26635 and PFLU_RS26640 are separated by 180 nucleotides
PFLU_RS26625: PFLU_RS26625 - lipoyl(octanoyl) transferase LipB, at 5,951,445 to 5,952,092
_RS26625
PFLU_RS26630: PFLU_RS26630 - DUF493 domain-containing protein, at 5,952,092 to 5,952,367
_RS26630
PFLU_RS26635: PFLU_RS26635 - D-alanyl-D-alanine carboxypeptidase, at 5,952,452 to 5,953,609
_RS26635
PFLU_RS26640: PFLU_RS26640 - septal ring lytic transglycosylase RlpA family protein, at 5,953,790 to 5,954,794
_RS26640
Position (kb) 5952
5953
5954 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5952.384 kb on - strand at 5952.389 kb on + strand at 5952.389 kb on + strand at 5952.390 kb on - strand at 5952.451 kb on - strand at 5952.451 kb on - strand at 5952.451 kb on - strand at 5952.451 kb on - strand at 5952.451 kb on - strand at 5952.451 kb on - strand at 5952.477 kb on - strand at 5952.488 kb on - strand at 5952.509 kb on - strand at 5952.509 kb on - strand at 5952.509 kb on - strand at 5952.670 kb on + strand, within PFLU_RS26635 at 5952.671 kb on - strand, within PFLU_RS26635 at 5952.721 kb on + strand, within PFLU_RS26635 at 5952.768 kb on + strand, within PFLU_RS26635 at 5952.768 kb on + strand, within PFLU_RS26635 at 5952.768 kb on + strand, within PFLU_RS26635 at 5952.768 kb on + strand, within PFLU_RS26635 at 5952.801 kb on + strand, within PFLU_RS26635 at 5952.801 kb on + strand, within PFLU_RS26635 at 5952.801 kb on + strand, within PFLU_RS26635 at 5952.801 kb on + strand, within PFLU_RS26635 at 5952.847 kb on + strand, within PFLU_RS26635 at 5952.847 kb on + strand, within PFLU_RS26635 at 5952.847 kb on + strand, within PFLU_RS26635 at 5952.850 kb on + strand, within PFLU_RS26635 at 5952.850 kb on + strand, within PFLU_RS26635 at 5952.887 kb on + strand, within PFLU_RS26635 at 5952.887 kb on + strand, within PFLU_RS26635 at 5952.887 kb on + strand, within PFLU_RS26635 at 5953.023 kb on + strand, within PFLU_RS26635 at 5953.023 kb on + strand, within PFLU_RS26635 at 5953.023 kb on + strand, within PFLU_RS26635 at 5953.095 kb on + strand, within PFLU_RS26635 at 5953.096 kb on - strand, within PFLU_RS26635 at 5953.398 kb on + strand, within PFLU_RS26635 at 5953.398 kb on + strand, within PFLU_RS26635 at 5953.399 kb on - strand, within PFLU_RS26635 at 5953.571 kb on - strand at 5953.571 kb on - strand at 5953.571 kb on - strand at 5953.571 kb on - strand at 5953.593 kb on - strand at 5953.628 kb on + strand at 5953.658 kb on - strand at 5953.725 kb on + strand at 5953.725 kb on + strand at 5953.725 kb on + strand at 5953.726 kb on - strand at 5953.788 kb on + strand at 5953.789 kb on - strand at 5953.789 kb on - strand at 5953.789 kb on - strand at 5953.792 kb on - strand at 5953.847 kb on + strand at 5953.847 kb on + strand at 5953.847 kb on + strand at 5953.847 kb on + strand at 5953.847 kb on + strand at 5953.847 kb on + strand at 5953.848 kb on - strand at 5953.848 kb on - strand at 5953.875 kb on - strand at 5953.912 kb on + strand, within PFLU_RS26640 at 5953.913 kb on - strand, within PFLU_RS26640 at 5953.913 kb on - strand, within PFLU_RS26640 at 5953.952 kb on - strand, within PFLU_RS26640 at 5953.970 kb on + strand, within PFLU_RS26640 at 5954.017 kb on - strand, within PFLU_RS26640 at 5954.017 kb on - strand, within PFLU_RS26640 at 5954.057 kb on + strand, within PFLU_RS26640 at 5954.159 kb on - strand, within PFLU_RS26640 at 5954.196 kb on + strand, within PFLU_RS26640 at 5954.196 kb on + strand, within PFLU_RS26640 at 5954.197 kb on - strand, within PFLU_RS26640 at 5954.274 kb on + strand, within PFLU_RS26640 at 5954.275 kb on - strand, within PFLU_RS26640 at 5954.302 kb on - strand, within PFLU_RS26640 at 5954.302 kb on - strand, within PFLU_RS26640 at 5954.302 kb on - strand, within PFLU_RS26640 at 5954.302 kb on - strand, within PFLU_RS26640 at 5954.302 kb on - strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.366 kb on + strand, within PFLU_RS26640 at 5954.367 kb on - strand, within PFLU_RS26640 at 5954.367 kb on - strand, within PFLU_RS26640 at 5954.367 kb on - strand, within PFLU_RS26640 at 5954.367 kb on - strand, within PFLU_RS26640 at 5954.367 kb on - strand, within PFLU_RS26640 at 5954.367 kb on - strand, within PFLU_RS26640 at 5954.367 kb on - strand, within PFLU_RS26640 at 5954.367 kb on - strand, within PFLU_RS26640 at 5954.367 kb on - strand, within PFLU_RS26640 at 5954.367 kb on - strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.370 kb on + strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.371 kb on - strand, within PFLU_RS26640 at 5954.421 kb on + strand, within PFLU_RS26640 at 5954.421 kb on + strand, within PFLU_RS26640 at 5954.421 kb on + strand, within PFLU_RS26640 at 5954.422 kb on - strand, within PFLU_RS26640 at 5954.422 kb on - strand, within PFLU_RS26640 at 5954.422 kb on - strand, within PFLU_RS26640 at 5954.493 kb on + strand, within PFLU_RS26640 at 5954.493 kb on + strand, within PFLU_RS26640 at 5954.493 kb on + strand, within PFLU_RS26640 at 5954.494 kb on - strand, within PFLU_RS26640 at 5954.494 kb on - strand, within PFLU_RS26640 at 5954.494 kb on - strand, within PFLU_RS26640 at 5954.494 kb on - strand, within PFLU_RS26640 at 5954.494 kb on - strand, within PFLU_RS26640 at 5954.494 kb on - strand, within PFLU_RS26640 at 5954.494 kb on - strand, within PFLU_RS26640 at 5954.521 kb on - strand, within PFLU_RS26640 at 5954.521 kb on - strand, within PFLU_RS26640 at 5954.521 kb on - strand, within PFLU_RS26640 at 5954.521 kb on - strand, within PFLU_RS26640 at 5954.521 kb on - strand, within PFLU_RS26640 at 5954.521 kb on - strand, within PFLU_RS26640 at 5954.521 kb on - strand, within PFLU_RS26640 at 5954.539 kb on + strand, within PFLU_RS26640 at 5954.540 kb on - strand, within PFLU_RS26640 at 5954.541 kb on + strand, within PFLU_RS26640 at 5954.541 kb on + strand, within PFLU_RS26640 at 5954.541 kb on + strand, within PFLU_RS26640 at 5954.542 kb on - strand, within PFLU_RS26640 at 5954.542 kb on - strand, within PFLU_RS26640 at 5954.542 kb on - strand, within PFLU_RS26640 at 5954.542 kb on - strand, within PFLU_RS26640 at 5954.542 kb on - strand, within PFLU_RS26640 at 5954.556 kb on + strand, within PFLU_RS26640 at 5954.557 kb on - strand, within PFLU_RS26640 at 5954.557 kb on - strand, within PFLU_RS26640
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 5,952,384 - -0.1 5,952,389 + +0.6 5,952,389 + +0.6 5,952,390 - +0.2 5,952,451 - +0.2 5,952,451 - -0.8 5,952,451 - -1.1 5,952,451 - +2.9 5,952,451 - -1.6 5,952,451 - +1.5 5,952,477 - -0.0 5,952,488 - -0.2 5,952,509 - +0.5 5,952,509 - -0.6 5,952,509 - -1.5 5,952,670 + PFLU_RS26635 0.19 -0.2 5,952,671 - PFLU_RS26635 0.19 -0.8 5,952,721 + PFLU_RS26635 0.23 -1.7 5,952,768 + PFLU_RS26635 0.27 -1.2 5,952,768 + PFLU_RS26635 0.27 -0.2 5,952,768 + PFLU_RS26635 0.27 +1.2 5,952,768 + PFLU_RS26635 0.27 -1.2 5,952,801 + PFLU_RS26635 0.30 -0.2 5,952,801 + PFLU_RS26635 0.30 -0.4 5,952,801 + PFLU_RS26635 0.30 -3.0 5,952,801 + PFLU_RS26635 0.30 -0.4 5,952,847 + PFLU_RS26635 0.34 -0.8 5,952,847 + PFLU_RS26635 0.34 +1.2 5,952,847 + PFLU_RS26635 0.34 +3.4 5,952,850 + PFLU_RS26635 0.34 -0.8 5,952,850 + PFLU_RS26635 0.34 +0.6 5,952,887 + PFLU_RS26635 0.38 -0.4 5,952,887 + PFLU_RS26635 0.38 +0.6 5,952,887 + PFLU_RS26635 0.38 +0.2 5,953,023 + PFLU_RS26635 0.49 +0.7 5,953,023 + PFLU_RS26635 0.49 +1.2 5,953,023 + PFLU_RS26635 0.49 -1.0 5,953,095 + PFLU_RS26635 0.56 +1.2 5,953,096 - PFLU_RS26635 0.56 -0.2 5,953,398 + PFLU_RS26635 0.82 -0.4 5,953,398 + PFLU_RS26635 0.82 +2.2 5,953,399 - PFLU_RS26635 0.82 -1.2 5,953,571 - +1.2 5,953,571 - +1.2 5,953,571 - +1.4 5,953,571 - -1.4 5,953,593 - +1.2 5,953,628 + +0.6 5,953,658 - +3.0 5,953,725 + -0.5 5,953,725 + -0.3 5,953,725 + -1.9 5,953,726 - +0.4 5,953,788 + +0.8 5,953,789 - +0.9 5,953,789 - +0.3 5,953,789 - -0.1 5,953,792 - -0.1 5,953,847 + -3.1 5,953,847 + -1.9 5,953,847 + -1.9 5,953,847 + -1.5 5,953,847 + -1.5 5,953,847 + +0.3 5,953,848 - -1.6 5,953,848 - -3.0 5,953,875 - -2.8 5,953,912 + PFLU_RS26640 0.12 -1.6 5,953,913 - PFLU_RS26640 0.12 -2.4 5,953,913 - PFLU_RS26640 0.12 +2.2 5,953,952 - PFLU_RS26640 0.16 -2.9 5,953,970 + PFLU_RS26640 0.18 -1.5 5,954,017 - PFLU_RS26640 0.23 -2.6 5,954,017 - PFLU_RS26640 0.23 -1.6 5,954,057 + PFLU_RS26640 0.27 -0.6 5,954,159 - PFLU_RS26640 0.37 -1.3 5,954,196 + PFLU_RS26640 0.40 -2.8 5,954,196 + PFLU_RS26640 0.40 -2.4 5,954,197 - PFLU_RS26640 0.40 -3.2 5,954,274 + PFLU_RS26640 0.48 -1.0 5,954,275 - PFLU_RS26640 0.48 -2.1 5,954,302 - PFLU_RS26640 0.51 -3.4 5,954,302 - PFLU_RS26640 0.51 -1.8 5,954,302 - PFLU_RS26640 0.51 -2.2 5,954,302 - PFLU_RS26640 0.51 -1.5 5,954,302 - PFLU_RS26640 0.51 -1.4 5,954,366 + PFLU_RS26640 0.57 +0.6 5,954,366 + PFLU_RS26640 0.57 +0.6 5,954,366 + PFLU_RS26640 0.57 -0.6 5,954,366 + PFLU_RS26640 0.57 -0.1 5,954,366 + PFLU_RS26640 0.57 +0.6 5,954,366 + PFLU_RS26640 0.57 -1.8 5,954,366 + PFLU_RS26640 0.57 -1.0 5,954,366 + PFLU_RS26640 0.57 -1.7 5,954,366 + PFLU_RS26640 0.57 -0.6 5,954,366 + PFLU_RS26640 0.57 +1.2 5,954,366 + PFLU_RS26640 0.57 -1.2 5,954,366 + PFLU_RS26640 0.57 +0.2 5,954,366 + PFLU_RS26640 0.57 -1.8 5,954,366 + PFLU_RS26640 0.57 -0.8 5,954,366 + PFLU_RS26640 0.57 -1.0 5,954,366 + PFLU_RS26640 0.57 -0.6 5,954,367 - PFLU_RS26640 0.57 -1.8 5,954,367 - PFLU_RS26640 0.57 -1.3 5,954,367 - PFLU_RS26640 0.57 -1.7 5,954,367 - PFLU_RS26640 0.57 -2.2 5,954,367 - PFLU_RS26640 0.57 -1.3 5,954,367 - PFLU_RS26640 0.57 -1.5 5,954,367 - PFLU_RS26640 0.57 -1.8 5,954,367 - PFLU_RS26640 0.57 -1.6 5,954,367 - PFLU_RS26640 0.57 -2.3 5,954,367 - PFLU_RS26640 0.57 -1.4 5,954,370 + PFLU_RS26640 0.58 -0.6 5,954,370 + PFLU_RS26640 0.58 -0.4 5,954,370 + PFLU_RS26640 0.58 -1.4 5,954,370 + PFLU_RS26640 0.58 -1.2 5,954,370 + PFLU_RS26640 0.58 -0.8 5,954,370 + PFLU_RS26640 0.58 -1.9 5,954,370 + PFLU_RS26640 0.58 +0.2 5,954,370 + PFLU_RS26640 0.58 -1.0 5,954,370 + PFLU_RS26640 0.58 -1.0 5,954,370 + PFLU_RS26640 0.58 -1.0 5,954,370 + PFLU_RS26640 0.58 +0.6 5,954,370 + PFLU_RS26640 0.58 +1.2 5,954,370 + PFLU_RS26640 0.58 +0.2 5,954,370 + PFLU_RS26640 0.58 -1.0 5,954,370 + PFLU_RS26640 0.58 +2.2 5,954,370 + PFLU_RS26640 0.58 -1.6 5,954,370 + PFLU_RS26640 0.58 -0.4 5,954,370 + PFLU_RS26640 0.58 -1.8 5,954,370 + PFLU_RS26640 0.58 -2.5 5,954,371 - PFLU_RS26640 0.58 -1.6 5,954,371 - PFLU_RS26640 0.58 -1.1 5,954,371 - PFLU_RS26640 0.58 -2.2 5,954,371 - PFLU_RS26640 0.58 -1.8 5,954,371 - PFLU_RS26640 0.58 -3.6 5,954,371 - PFLU_RS26640 0.58 -1.9 5,954,371 - PFLU_RS26640 0.58 -1.8 5,954,371 - PFLU_RS26640 0.58 -0.2 5,954,371 - PFLU_RS26640 0.58 -3.4 5,954,371 - PFLU_RS26640 0.58 -1.7 5,954,371 - PFLU_RS26640 0.58 -3.9 5,954,371 - PFLU_RS26640 0.58 +1.2 5,954,371 - PFLU_RS26640 0.58 -1.3 5,954,371 - PFLU_RS26640 0.58 -1.8 5,954,371 - PFLU_RS26640 0.58 -2.5 5,954,371 - PFLU_RS26640 0.58 -1.6 5,954,371 - PFLU_RS26640 0.58 -2.7 5,954,371 - PFLU_RS26640 0.58 -0.4 5,954,371 - PFLU_RS26640 0.58 -2.4 5,954,371 - PFLU_RS26640 0.58 -2.5 5,954,371 - PFLU_RS26640 0.58 -2.6 5,954,371 - PFLU_RS26640 0.58 -2.1 5,954,371 - PFLU_RS26640 0.58 -2.0 5,954,371 - PFLU_RS26640 0.58 +0.2 5,954,371 - PFLU_RS26640 0.58 -0.4 5,954,421 + PFLU_RS26640 0.63 -0.6 5,954,421 + PFLU_RS26640 0.63 -0.2 5,954,421 + PFLU_RS26640 0.63 +1.2 5,954,422 - PFLU_RS26640 0.63 -3.7 5,954,422 - PFLU_RS26640 0.63 -1.2 5,954,422 - PFLU_RS26640 0.63 -1.0 5,954,493 + PFLU_RS26640 0.70 -2.2 5,954,493 + PFLU_RS26640 0.70 -0.6 5,954,493 + PFLU_RS26640 0.70 +1.2 5,954,494 - PFLU_RS26640 0.70 -2.8 5,954,494 - PFLU_RS26640 0.70 -2.5 5,954,494 - PFLU_RS26640 0.70 -2.1 5,954,494 - PFLU_RS26640 0.70 -1.7 5,954,494 - PFLU_RS26640 0.70 -1.5 5,954,494 - PFLU_RS26640 0.70 -3.5 5,954,494 - PFLU_RS26640 0.70 -2.2 5,954,521 - PFLU_RS26640 0.73 -3.3 5,954,521 - PFLU_RS26640 0.73 -2.4 5,954,521 - PFLU_RS26640 0.73 -2.7 5,954,521 - PFLU_RS26640 0.73 -1.1 5,954,521 - PFLU_RS26640 0.73 -1.7 5,954,521 - PFLU_RS26640 0.73 -2.6 5,954,521 - PFLU_RS26640 0.73 -2.4 5,954,539 + PFLU_RS26640 0.75 -0.2 5,954,540 - PFLU_RS26640 0.75 -2.1 5,954,541 + PFLU_RS26640 0.75 -0.2 5,954,541 + PFLU_RS26640 0.75 +1.2 5,954,541 + PFLU_RS26640 0.75 +0.6 5,954,542 - PFLU_RS26640 0.75 -1.3 5,954,542 - PFLU_RS26640 0.75 -1.3 5,954,542 - PFLU_RS26640 0.75 -2.0 5,954,542 - PFLU_RS26640 0.75 +0.2 5,954,542 - PFLU_RS26640 0.75 -2.5 5,954,556 + PFLU_RS26640 0.76 -0.6 5,954,557 - PFLU_RS26640 0.76 -1.7 5,954,557 - PFLU_RS26640 0.76 -2.8
Or see this region's nucleotide sequence