Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25510 and PFLU_RS25515 are separated by 140 nucleotides PFLU_RS25515 and PFLU_RS25520 overlap by 4 nucleotides PFLU_RS25520 and PFLU_RS25525 are separated by 240 nucleotides
PFLU_RS25510: PFLU_RS25510 - amino acid permease, at 5,693,518 to 5,694,921
_RS25510
PFLU_RS25515: PFLU_RS25515 - tryptophan 2,3-dioxygenase, at 5,695,062 to 5,695,919
_RS25515
PFLU_RS25520: PFLU_RS25520 - arylformamidase, at 5,695,916 to 5,696,566
_RS25520
PFLU_RS25525: PFLU_RS25525 - cupin domain-containing protein, at 5,696,807 to 5,697,151
_RS25525
Position (kb) 5695
5696 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5694.176 kb on + strand, within PFLU_RS25510 at 5694.176 kb on + strand, within PFLU_RS25510 at 5694.244 kb on + strand, within PFLU_RS25510 at 5694.262 kb on + strand, within PFLU_RS25510 at 5694.262 kb on + strand, within PFLU_RS25510 at 5694.263 kb on - strand, within PFLU_RS25510 at 5694.343 kb on + strand, within PFLU_RS25510 at 5694.343 kb on + strand, within PFLU_RS25510 at 5694.343 kb on + strand, within PFLU_RS25510 at 5694.344 kb on - strand, within PFLU_RS25510 at 5694.344 kb on - strand, within PFLU_RS25510 at 5694.344 kb on - strand, within PFLU_RS25510 at 5694.442 kb on + strand, within PFLU_RS25510 at 5694.442 kb on + strand, within PFLU_RS25510 at 5694.442 kb on + strand, within PFLU_RS25510 at 5694.442 kb on + strand, within PFLU_RS25510 at 5694.442 kb on + strand, within PFLU_RS25510 at 5694.442 kb on + strand, within PFLU_RS25510 at 5694.443 kb on - strand, within PFLU_RS25510 at 5694.443 kb on - strand, within PFLU_RS25510 at 5694.443 kb on - strand, within PFLU_RS25510 at 5694.458 kb on - strand, within PFLU_RS25510 at 5694.458 kb on - strand, within PFLU_RS25510 at 5694.598 kb on + strand, within PFLU_RS25510 at 5694.598 kb on + strand, within PFLU_RS25510 at 5694.598 kb on + strand, within PFLU_RS25510 at 5694.598 kb on + strand, within PFLU_RS25510 at 5694.598 kb on + strand, within PFLU_RS25510 at 5694.598 kb on + strand, within PFLU_RS25510 at 5694.598 kb on + strand, within PFLU_RS25510 at 5694.598 kb on + strand, within PFLU_RS25510 at 5694.598 kb on + strand, within PFLU_RS25510 at 5694.599 kb on - strand, within PFLU_RS25510 at 5694.599 kb on - strand, within PFLU_RS25510 at 5694.599 kb on - strand, within PFLU_RS25510 at 5694.599 kb on - strand, within PFLU_RS25510 at 5694.599 kb on - strand, within PFLU_RS25510 at 5694.599 kb on - strand, within PFLU_RS25510 at 5694.763 kb on + strand, within PFLU_RS25510 at 5694.763 kb on + strand, within PFLU_RS25510 at 5694.763 kb on + strand, within PFLU_RS25510 at 5694.763 kb on + strand, within PFLU_RS25510 at 5694.763 kb on + strand, within PFLU_RS25510 at 5694.763 kb on + strand, within PFLU_RS25510 at 5694.764 kb on - strand, within PFLU_RS25510 at 5694.764 kb on - strand, within PFLU_RS25510 at 5694.764 kb on - strand, within PFLU_RS25510 at 5694.764 kb on - strand, within PFLU_RS25510 at 5694.764 kb on - strand, within PFLU_RS25510 at 5694.764 kb on - strand, within PFLU_RS25510 at 5694.835 kb on + strand at 5694.835 kb on + strand at 5694.835 kb on + strand at 5694.835 kb on + strand at 5694.835 kb on + strand at 5694.835 kb on + strand at 5694.836 kb on - strand at 5694.836 kb on - strand at 5694.836 kb on - strand at 5694.836 kb on - strand at 5694.861 kb on + strand at 5694.861 kb on + strand at 5694.862 kb on - strand at 5694.862 kb on - strand at 5694.862 kb on - strand at 5694.865 kb on + strand at 5694.865 kb on + strand at 5694.865 kb on + strand at 5694.865 kb on + strand at 5694.865 kb on + strand at 5694.865 kb on + strand at 5694.865 kb on + strand at 5694.866 kb on - strand at 5694.866 kb on - strand at 5694.866 kb on - strand at 5694.866 kb on - strand at 5694.866 kb on - strand at 5694.866 kb on - strand at 5694.866 kb on - strand at 5694.866 kb on - strand at 5695.064 kb on - strand at 5695.077 kb on + strand at 5695.077 kb on + strand at 5695.087 kb on - strand at 5695.087 kb on - strand at 5695.087 kb on - strand at 5695.106 kb on + strand at 5695.126 kb on + strand at 5695.126 kb on + strand at 5695.126 kb on + strand at 5695.142 kb on + strand at 5695.252 kb on + strand, within PFLU_RS25515 at 5695.252 kb on + strand, within PFLU_RS25515 at 5695.253 kb on - strand, within PFLU_RS25515 at 5695.253 kb on - strand, within PFLU_RS25515 at 5695.282 kb on + strand, within PFLU_RS25515 at 5695.282 kb on + strand, within PFLU_RS25515 at 5695.283 kb on - strand, within PFLU_RS25515 at 5695.283 kb on - strand, within PFLU_RS25515 at 5695.283 kb on - strand, within PFLU_RS25515 at 5695.283 kb on - strand, within PFLU_RS25515 at 5695.283 kb on - strand, within PFLU_RS25515 at 5695.283 kb on - strand, within PFLU_RS25515 at 5695.405 kb on + strand, within PFLU_RS25515 at 5695.406 kb on - strand, within PFLU_RS25515 at 5695.502 kb on + strand, within PFLU_RS25515 at 5695.502 kb on + strand, within PFLU_RS25515 at 5695.573 kb on + strand, within PFLU_RS25515 at 5695.573 kb on + strand, within PFLU_RS25515 at 5695.573 kb on + strand, within PFLU_RS25515 at 5695.573 kb on + strand, within PFLU_RS25515 at 5695.574 kb on - strand, within PFLU_RS25515 at 5695.574 kb on - strand, within PFLU_RS25515 at 5695.574 kb on - strand, within PFLU_RS25515 at 5695.683 kb on + strand, within PFLU_RS25515 at 5695.683 kb on + strand, within PFLU_RS25515 at 5695.684 kb on - strand, within PFLU_RS25515 at 5695.684 kb on - strand, within PFLU_RS25515 at 5695.684 kb on - strand, within PFLU_RS25515 at 5695.684 kb on - strand, within PFLU_RS25515 at 5695.826 kb on - strand, within PFLU_RS25515 at 5695.826 kb on - strand, within PFLU_RS25515 at 5695.834 kb on + strand at 5695.834 kb on + strand at 5695.834 kb on + strand at 5695.834 kb on + strand at 5695.835 kb on - strand at 5696.007 kb on + strand, within PFLU_RS25520 at 5696.008 kb on - strand, within PFLU_RS25520 at 5696.021 kb on + strand, within PFLU_RS25520 at 5696.022 kb on - strand, within PFLU_RS25520 at 5696.122 kb on + strand, within PFLU_RS25520 at 5696.123 kb on - strand, within PFLU_RS25520 at 5696.123 kb on - strand, within PFLU_RS25520 at 5696.226 kb on + strand, within PFLU_RS25520 at 5696.226 kb on + strand, within PFLU_RS25520 at 5696.226 kb on + strand, within PFLU_RS25520 at 5696.226 kb on + strand, within PFLU_RS25520 at 5696.227 kb on - strand, within PFLU_RS25520 at 5696.227 kb on - strand, within PFLU_RS25520 at 5696.227 kb on - strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.337 kb on + strand, within PFLU_RS25520 at 5696.338 kb on - strand, within PFLU_RS25520 at 5696.338 kb on - strand, within PFLU_RS25520 at 5696.338 kb on - strand, within PFLU_RS25520 at 5696.338 kb on - strand, within PFLU_RS25520 at 5696.338 kb on - strand, within PFLU_RS25520 at 5696.338 kb on - strand, within PFLU_RS25520 at 5696.338 kb on - strand, within PFLU_RS25520 at 5696.338 kb on - strand, within PFLU_RS25520 at 5696.338 kb on - strand, within PFLU_RS25520 at 5696.338 kb on - strand, within PFLU_RS25520 at 5696.338 kb on - strand, within PFLU_RS25520 at 5696.382 kb on + strand, within PFLU_RS25520 at 5696.382 kb on + strand, within PFLU_RS25520 at 5696.383 kb on - strand, within PFLU_RS25520 at 5696.383 kb on - strand, within PFLU_RS25520 at 5696.522 kb on - strand at 5696.522 kb on - strand at 5696.600 kb on + strand at 5696.600 kb on + strand at 5696.601 kb on - strand at 5696.601 kb on - strand at 5696.601 kb on - strand at 5696.662 kb on + strand at 5696.663 kb on - strand at 5696.663 kb on - strand at 5696.675 kb on + strand at 5696.694 kb on + strand at 5696.694 kb on + strand at 5696.694 kb on + strand at 5696.694 kb on + strand at 5696.694 kb on + strand at 5696.694 kb on + strand at 5696.695 kb on - strand at 5696.695 kb on - strand at 5696.695 kb on - strand at 5696.695 kb on - strand at 5696.695 kb on - strand at 5696.696 kb on + strand at 5696.696 kb on + strand at 5696.697 kb on - strand at 5696.697 kb on - strand at 5696.697 kb on - strand at 5696.697 kb on - strand at 5696.697 kb on - strand at 5696.697 kb on - strand at 5696.697 kb on - strand at 5696.703 kb on + strand at 5696.703 kb on + strand at 5696.704 kb on - strand at 5696.707 kb on + strand at 5696.708 kb on - strand at 5696.770 kb on + strand at 5696.771 kb on - strand at 5696.915 kb on + strand, within PFLU_RS25525 at 5696.916 kb on - strand, within PFLU_RS25525 at 5696.916 kb on - strand, within PFLU_RS25525
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 5,694,176 + PFLU_RS25510 0.47 +0.5 5,694,176 + PFLU_RS25510 0.47 +2.5 5,694,244 + PFLU_RS25510 0.52 +0.8 5,694,262 + PFLU_RS25510 0.53 -0.1 5,694,262 + PFLU_RS25510 0.53 -2.3 5,694,263 - PFLU_RS25510 0.53 -0.8 5,694,343 + PFLU_RS25510 0.59 -0.4 5,694,343 + PFLU_RS25510 0.59 +0.3 5,694,343 + PFLU_RS25510 0.59 +1.3 5,694,344 - PFLU_RS25510 0.59 +0.4 5,694,344 - PFLU_RS25510 0.59 -1.0 5,694,344 - PFLU_RS25510 0.59 +0.3 5,694,442 + PFLU_RS25510 0.66 +1.0 5,694,442 + PFLU_RS25510 0.66 +1.3 5,694,442 + PFLU_RS25510 0.66 +1.7 5,694,442 + PFLU_RS25510 0.66 -0.2 5,694,442 + PFLU_RS25510 0.66 -0.6 5,694,442 + PFLU_RS25510 0.66 -1.5 5,694,443 - PFLU_RS25510 0.66 +1.2 5,694,443 - PFLU_RS25510 0.66 -3.4 5,694,443 - PFLU_RS25510 0.66 -2.3 5,694,458 - PFLU_RS25510 0.67 -0.1 5,694,458 - PFLU_RS25510 0.67 +2.1 5,694,598 + PFLU_RS25510 0.77 +0.5 5,694,598 + PFLU_RS25510 0.77 +1.1 5,694,598 + PFLU_RS25510 0.77 +1.1 5,694,598 + PFLU_RS25510 0.77 +0.9 5,694,598 + PFLU_RS25510 0.77 +1.1 5,694,598 + PFLU_RS25510 0.77 +1.2 5,694,598 + PFLU_RS25510 0.77 +0.2 5,694,598 + PFLU_RS25510 0.77 -0.2 5,694,598 + PFLU_RS25510 0.77 +2.4 5,694,599 - PFLU_RS25510 0.77 -0.4 5,694,599 - PFLU_RS25510 0.77 +0.6 5,694,599 - PFLU_RS25510 0.77 -0.6 5,694,599 - PFLU_RS25510 0.77 -1.4 5,694,599 - PFLU_RS25510 0.77 -0.3 5,694,599 - PFLU_RS25510 0.77 -1.3 5,694,763 + PFLU_RS25510 0.89 -0.4 5,694,763 + PFLU_RS25510 0.89 +2.5 5,694,763 + PFLU_RS25510 0.89 +0.9 5,694,763 + PFLU_RS25510 0.89 -0.8 5,694,763 + PFLU_RS25510 0.89 -3.2 5,694,763 + PFLU_RS25510 0.89 +0.3 5,694,764 - PFLU_RS25510 0.89 +1.7 5,694,764 - PFLU_RS25510 0.89 +0.7 5,694,764 - PFLU_RS25510 0.89 -0.8 5,694,764 - PFLU_RS25510 0.89 -0.0 5,694,764 - PFLU_RS25510 0.89 +0.2 5,694,764 - PFLU_RS25510 0.89 -0.1 5,694,835 + -1.0 5,694,835 + +1.4 5,694,835 + +2.1 5,694,835 + +0.0 5,694,835 + -2.5 5,694,835 + +0.1 5,694,836 - +0.4 5,694,836 - -0.6 5,694,836 - +0.2 5,694,836 - -1.1 5,694,861 + +0.6 5,694,861 + +1.1 5,694,862 - +0.2 5,694,862 - +1.2 5,694,862 - -1.2 5,694,865 + +0.7 5,694,865 + -0.9 5,694,865 + +0.5 5,694,865 + +0.5 5,694,865 + +0.6 5,694,865 + +1.4 5,694,865 + -0.1 5,694,866 - -2.1 5,694,866 - -0.3 5,694,866 - +1.4 5,694,866 - +0.1 5,694,866 - -0.1 5,694,866 - +1.3 5,694,866 - -0.6 5,694,866 - +0.4 5,695,064 - -1.7 5,695,077 + -1.5 5,695,077 + -0.6 5,695,087 - -0.0 5,695,087 - -0.6 5,695,087 - +1.0 5,695,106 + -0.3 5,695,126 + +1.0 5,695,126 + -0.1 5,695,126 + -2.8 5,695,142 + -0.4 5,695,252 + PFLU_RS25515 0.22 +1.4 5,695,252 + PFLU_RS25515 0.22 -1.9 5,695,253 - PFLU_RS25515 0.22 -0.2 5,695,253 - PFLU_RS25515 0.22 -1.0 5,695,282 + PFLU_RS25515 0.26 -1.6 5,695,282 + PFLU_RS25515 0.26 -1.7 5,695,283 - PFLU_RS25515 0.26 -1.1 5,695,283 - PFLU_RS25515 0.26 -0.9 5,695,283 - PFLU_RS25515 0.26 +0.6 5,695,283 - PFLU_RS25515 0.26 +0.3 5,695,283 - PFLU_RS25515 0.26 +1.1 5,695,283 - PFLU_RS25515 0.26 -0.8 5,695,405 + PFLU_RS25515 0.40 -2.2 5,695,406 - PFLU_RS25515 0.40 -0.5 5,695,502 + PFLU_RS25515 0.51 -0.6 5,695,502 + PFLU_RS25515 0.51 -0.0 5,695,573 + PFLU_RS25515 0.60 +1.2 5,695,573 + PFLU_RS25515 0.60 +0.7 5,695,573 + PFLU_RS25515 0.60 +0.2 5,695,573 + PFLU_RS25515 0.60 -3.9 5,695,574 - PFLU_RS25515 0.60 -0.3 5,695,574 - PFLU_RS25515 0.60 +0.1 5,695,574 - PFLU_RS25515 0.60 -1.3 5,695,683 + PFLU_RS25515 0.72 +0.7 5,695,683 + PFLU_RS25515 0.72 -0.6 5,695,684 - PFLU_RS25515 0.72 +0.5 5,695,684 - PFLU_RS25515 0.72 +2.1 5,695,684 - PFLU_RS25515 0.72 +0.3 5,695,684 - PFLU_RS25515 0.72 -0.0 5,695,826 - PFLU_RS25515 0.89 -1.2 5,695,826 - PFLU_RS25515 0.89 +0.3 5,695,834 + -0.5 5,695,834 + +2.4 5,695,834 + +1.5 5,695,834 + -0.1 5,695,835 - -3.5 5,696,007 + PFLU_RS25520 0.14 -2.2 5,696,008 - PFLU_RS25520 0.14 +0.1 5,696,021 + PFLU_RS25520 0.16 -1.6 5,696,022 - PFLU_RS25520 0.16 -1.0 5,696,122 + PFLU_RS25520 0.32 -0.3 5,696,123 - PFLU_RS25520 0.32 -0.3 5,696,123 - PFLU_RS25520 0.32 +0.9 5,696,226 + PFLU_RS25520 0.48 +0.8 5,696,226 + PFLU_RS25520 0.48 -0.4 5,696,226 + PFLU_RS25520 0.48 +1.0 5,696,226 + PFLU_RS25520 0.48 +0.1 5,696,227 - PFLU_RS25520 0.48 -1.1 5,696,227 - PFLU_RS25520 0.48 -0.2 5,696,227 - PFLU_RS25520 0.48 +0.7 5,696,337 + PFLU_RS25520 0.65 +1.2 5,696,337 + PFLU_RS25520 0.65 -1.8 5,696,337 + PFLU_RS25520 0.65 +1.7 5,696,337 + PFLU_RS25520 0.65 -0.4 5,696,337 + PFLU_RS25520 0.65 +1.4 5,696,337 + PFLU_RS25520 0.65 -1.0 5,696,337 + PFLU_RS25520 0.65 +1.7 5,696,337 + PFLU_RS25520 0.65 -2.1 5,696,337 + PFLU_RS25520 0.65 +0.6 5,696,337 + PFLU_RS25520 0.65 -0.3 5,696,337 + PFLU_RS25520 0.65 -0.6 5,696,337 + PFLU_RS25520 0.65 -1.1 5,696,337 + PFLU_RS25520 0.65 +0.5 5,696,337 + PFLU_RS25520 0.65 +0.3 5,696,337 + PFLU_RS25520 0.65 -0.7 5,696,337 + PFLU_RS25520 0.65 +0.4 5,696,338 - PFLU_RS25520 0.65 -0.9 5,696,338 - PFLU_RS25520 0.65 -2.2 5,696,338 - PFLU_RS25520 0.65 +1.4 5,696,338 - PFLU_RS25520 0.65 +2.1 5,696,338 - PFLU_RS25520 0.65 -0.2 5,696,338 - PFLU_RS25520 0.65 -0.5 5,696,338 - PFLU_RS25520 0.65 -0.3 5,696,338 - PFLU_RS25520 0.65 +0.5 5,696,338 - PFLU_RS25520 0.65 -1.5 5,696,338 - PFLU_RS25520 0.65 +0.2 5,696,338 - PFLU_RS25520 0.65 +0.9 5,696,382 + PFLU_RS25520 0.72 -2.5 5,696,382 + PFLU_RS25520 0.72 +1.5 5,696,383 - PFLU_RS25520 0.72 -0.6 5,696,383 - PFLU_RS25520 0.72 -0.8 5,696,522 - +1.7 5,696,522 - -2.2 5,696,600 + -0.8 5,696,600 + +2.5 5,696,601 - +0.5 5,696,601 - -0.2 5,696,601 - -1.0 5,696,662 + +0.9 5,696,663 - +2.1 5,696,663 - +1.4 5,696,675 + -0.6 5,696,694 + +0.2 5,696,694 + +0.7 5,696,694 + +1.6 5,696,694 + -3.1 5,696,694 + -0.9 5,696,694 + -0.4 5,696,695 - -3.0 5,696,695 - +0.7 5,696,695 - +1.8 5,696,695 - -2.8 5,696,695 - -1.7 5,696,696 + -1.1 5,696,696 + +1.6 5,696,697 - -1.3 5,696,697 - -1.4 5,696,697 - -2.1 5,696,697 - -0.9 5,696,697 - +1.6 5,696,697 - -0.5 5,696,697 - -1.9 5,696,703 + +0.0 5,696,703 + -0.5 5,696,704 - +1.5 5,696,707 + -0.6 5,696,708 - -0.7 5,696,770 + -1.8 5,696,771 - +0.4 5,696,915 + PFLU_RS25525 0.31 +0.3 5,696,916 - PFLU_RS25525 0.32 -1.7 5,696,916 - PFLU_RS25525 0.32 +0.0
Or see this region's nucleotide sequence