Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25350 and PFLU_RS25355 are separated by 101 nucleotides PFLU_RS25355 and PFLU_RS25360 are separated by 15 nucleotides PFLU_RS25360 and PFLU_RS25365 are separated by 111 nucleotides
PFLU_RS25350: PFLU_RS25350 - glutathione peroxidase, at 5,662,383 to 5,662,865
_RS25350
PFLU_RS25355: PFLU_RS25355 - CreA family protein, at 5,662,967 to 5,663,431
_RS25355
PFLU_RS25360: PFLU_RS25360 - glutamate 5-kinase, at 5,663,447 to 5,664,565
_RS25360
PFLU_RS25365: PFLU_RS25365 - Obg family GTPase CgtA, at 5,664,677 to 5,665,900
_RS25365
Position (kb) 5663
5664
5665 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5662.546 kb on + strand, within PFLU_RS25350 at 5662.546 kb on + strand, within PFLU_RS25350 at 5662.547 kb on - strand, within PFLU_RS25350 at 5662.609 kb on + strand, within PFLU_RS25350 at 5662.609 kb on + strand, within PFLU_RS25350 at 5662.610 kb on - strand, within PFLU_RS25350 at 5662.610 kb on - strand, within PFLU_RS25350 at 5662.610 kb on - strand, within PFLU_RS25350 at 5662.610 kb on - strand, within PFLU_RS25350 at 5662.610 kb on - strand, within PFLU_RS25350 at 5662.694 kb on + strand, within PFLU_RS25350 at 5662.694 kb on + strand, within PFLU_RS25350 at 5662.695 kb on - strand, within PFLU_RS25350 at 5662.695 kb on - strand, within PFLU_RS25350 at 5662.711 kb on + strand, within PFLU_RS25350 at 5662.711 kb on + strand, within PFLU_RS25350 at 5662.711 kb on + strand, within PFLU_RS25350 at 5662.711 kb on + strand, within PFLU_RS25350 at 5662.711 kb on + strand, within PFLU_RS25350 at 5662.711 kb on + strand, within PFLU_RS25350 at 5662.711 kb on + strand, within PFLU_RS25350 at 5662.711 kb on + strand, within PFLU_RS25350 at 5662.712 kb on - strand, within PFLU_RS25350 at 5662.712 kb on - strand, within PFLU_RS25350 at 5662.712 kb on - strand, within PFLU_RS25350 at 5662.712 kb on - strand, within PFLU_RS25350 at 5662.712 kb on - strand, within PFLU_RS25350 at 5662.712 kb on - strand, within PFLU_RS25350 at 5662.712 kb on - strand, within PFLU_RS25350 at 5662.712 kb on - strand, within PFLU_RS25350 at 5662.720 kb on + strand, within PFLU_RS25350 at 5662.721 kb on - strand, within PFLU_RS25350 at 5662.741 kb on + strand, within PFLU_RS25350 at 5662.741 kb on + strand, within PFLU_RS25350 at 5662.741 kb on + strand, within PFLU_RS25350 at 5662.741 kb on + strand, within PFLU_RS25350 at 5662.741 kb on + strand, within PFLU_RS25350 at 5662.741 kb on + strand, within PFLU_RS25350 at 5662.742 kb on - strand, within PFLU_RS25350 at 5662.742 kb on - strand, within PFLU_RS25350 at 5662.742 kb on - strand, within PFLU_RS25350 at 5662.770 kb on + strand, within PFLU_RS25350 at 5662.770 kb on + strand, within PFLU_RS25350 at 5662.771 kb on - strand, within PFLU_RS25350 at 5662.879 kb on + strand at 5662.914 kb on + strand at 5662.915 kb on - strand at 5662.915 kb on - strand at 5662.937 kb on + strand at 5662.937 kb on + strand at 5662.937 kb on + strand at 5662.938 kb on - strand at 5662.938 kb on - strand at 5662.968 kb on + strand at 5663.046 kb on + strand, within PFLU_RS25355 at 5663.047 kb on - strand, within PFLU_RS25355 at 5663.047 kb on - strand, within PFLU_RS25355 at 5663.047 kb on - strand, within PFLU_RS25355 at 5663.047 kb on - strand, within PFLU_RS25355 at 5663.055 kb on + strand, within PFLU_RS25355 at 5663.055 kb on + strand, within PFLU_RS25355 at 5663.055 kb on + strand, within PFLU_RS25355 at 5663.056 kb on - strand, within PFLU_RS25355 at 5663.056 kb on - strand, within PFLU_RS25355 at 5663.056 kb on - strand, within PFLU_RS25355 at 5663.056 kb on - strand, within PFLU_RS25355 at 5663.065 kb on + strand, within PFLU_RS25355 at 5663.065 kb on + strand, within PFLU_RS25355 at 5663.065 kb on + strand, within PFLU_RS25355 at 5663.066 kb on - strand, within PFLU_RS25355 at 5663.066 kb on - strand, within PFLU_RS25355 at 5663.268 kb on + strand, within PFLU_RS25355 at 5663.268 kb on + strand, within PFLU_RS25355 at 5663.268 kb on + strand, within PFLU_RS25355 at 5663.269 kb on - strand, within PFLU_RS25355 at 5663.436 kb on + strand at 5663.436 kb on + strand at 5663.436 kb on + strand at 5663.437 kb on - strand at 5663.437 kb on - strand at 5663.474 kb on + strand at 5663.474 kb on + strand at 5663.475 kb on - strand at 5663.475 kb on - strand at 5663.496 kb on + strand at 5663.496 kb on + strand at 5663.496 kb on + strand at 5663.497 kb on - strand at 5663.497 kb on - strand at 5663.497 kb on - strand at 5663.497 kb on - strand at 5663.497 kb on - strand at 5663.497 kb on - strand at 5663.497 kb on - strand at 5663.497 kb on - strand at 5663.497 kb on - strand at 5663.497 kb on - strand at 5663.497 kb on - strand at 5663.502 kb on - strand at 5663.502 kb on - strand at 5663.502 kb on - strand at 5663.502 kb on - strand at 5663.502 kb on - strand at 5663.502 kb on - strand at 5663.502 kb on - strand at 5663.502 kb on - strand at 5663.505 kb on - strand at 5663.505 kb on - strand at 5663.505 kb on - strand at 5663.505 kb on - strand at 5663.505 kb on - strand at 5663.562 kb on + strand, within PFLU_RS25360 at 5663.562 kb on + strand, within PFLU_RS25360 at 5663.562 kb on + strand, within PFLU_RS25360 at 5663.562 kb on + strand, within PFLU_RS25360 at 5663.562 kb on + strand, within PFLU_RS25360 at 5663.562 kb on + strand, within PFLU_RS25360 at 5663.562 kb on + strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5663.563 kb on - strand, within PFLU_RS25360 at 5664.578 kb on + strand at 5664.579 kb on - strand at 5664.579 kb on - strand at 5664.579 kb on - strand at 5664.579 kb on - strand at 5664.579 kb on - strand at 5664.579 kb on - strand at 5664.579 kb on - strand at 5664.579 kb on - strand at 5664.579 kb on - strand at 5664.618 kb on - strand at 5664.618 kb on - strand at 5664.630 kb on + strand at 5664.630 kb on + strand at 5664.631 kb on - strand at 5664.631 kb on - strand at 5664.645 kb on + strand at 5664.646 kb on - strand at 5664.690 kb on + strand at 5664.690 kb on + strand at 5664.690 kb on + strand at 5664.690 kb on + strand at 5664.691 kb on - strand at 5664.691 kb on - strand at 5664.691 kb on - strand at 5664.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 5,662,546 + PFLU_RS25350 0.34 +0.8 5,662,546 + PFLU_RS25350 0.34 -2.3 5,662,547 - PFLU_RS25350 0.34 -0.5 5,662,609 + PFLU_RS25350 0.47 -0.7 5,662,609 + PFLU_RS25350 0.47 -1.8 5,662,610 - PFLU_RS25350 0.47 -1.0 5,662,610 - PFLU_RS25350 0.47 +1.8 5,662,610 - PFLU_RS25350 0.47 -1.0 5,662,610 - PFLU_RS25350 0.47 +0.9 5,662,610 - PFLU_RS25350 0.47 +0.6 5,662,694 + PFLU_RS25350 0.64 -0.8 5,662,694 + PFLU_RS25350 0.64 -1.5 5,662,695 - PFLU_RS25350 0.65 -1.9 5,662,695 - PFLU_RS25350 0.65 -1.0 5,662,711 + PFLU_RS25350 0.68 +1.8 5,662,711 + PFLU_RS25350 0.68 -1.9 5,662,711 + PFLU_RS25350 0.68 +1.1 5,662,711 + PFLU_RS25350 0.68 -2.1 5,662,711 + PFLU_RS25350 0.68 -1.7 5,662,711 + PFLU_RS25350 0.68 -0.8 5,662,711 + PFLU_RS25350 0.68 -1.6 5,662,711 + PFLU_RS25350 0.68 -2.4 5,662,712 - PFLU_RS25350 0.68 -2.3 5,662,712 - PFLU_RS25350 0.68 +1.1 5,662,712 - PFLU_RS25350 0.68 +0.7 5,662,712 - PFLU_RS25350 0.68 +1.3 5,662,712 - PFLU_RS25350 0.68 -1.1 5,662,712 - PFLU_RS25350 0.68 -0.7 5,662,712 - PFLU_RS25350 0.68 +0.3 5,662,712 - PFLU_RS25350 0.68 +1.5 5,662,720 + PFLU_RS25350 0.70 +2.2 5,662,721 - PFLU_RS25350 0.70 -1.1 5,662,741 + PFLU_RS25350 0.74 -1.7 5,662,741 + PFLU_RS25350 0.74 -2.0 5,662,741 + PFLU_RS25350 0.74 -0.2 5,662,741 + PFLU_RS25350 0.74 -1.1 5,662,741 + PFLU_RS25350 0.74 -1.4 5,662,741 + PFLU_RS25350 0.74 +2.3 5,662,742 - PFLU_RS25350 0.74 +0.2 5,662,742 - PFLU_RS25350 0.74 -0.2 5,662,742 - PFLU_RS25350 0.74 -2.1 5,662,770 + PFLU_RS25350 0.80 +1.0 5,662,770 + PFLU_RS25350 0.80 +0.8 5,662,771 - PFLU_RS25350 0.80 -1.7 5,662,879 + -2.1 5,662,914 + -0.2 5,662,915 - +0.2 5,662,915 - +1.1 5,662,937 + -0.8 5,662,937 + +0.8 5,662,937 + +1.2 5,662,938 - -1.5 5,662,938 - -1.9 5,662,968 + +1.4 5,663,046 + PFLU_RS25355 0.17 -2.6 5,663,047 - PFLU_RS25355 0.17 +2.7 5,663,047 - PFLU_RS25355 0.17 +1.5 5,663,047 - PFLU_RS25355 0.17 -2.8 5,663,047 - PFLU_RS25355 0.17 -3.1 5,663,055 + PFLU_RS25355 0.19 +0.8 5,663,055 + PFLU_RS25355 0.19 -0.7 5,663,055 + PFLU_RS25355 0.19 +2.1 5,663,056 - PFLU_RS25355 0.19 -1.2 5,663,056 - PFLU_RS25355 0.19 +1.9 5,663,056 - PFLU_RS25355 0.19 +0.1 5,663,056 - PFLU_RS25355 0.19 +0.1 5,663,065 + PFLU_RS25355 0.21 -1.9 5,663,065 + PFLU_RS25355 0.21 +1.0 5,663,065 + PFLU_RS25355 0.21 -0.1 5,663,066 - PFLU_RS25355 0.21 +1.2 5,663,066 - PFLU_RS25355 0.21 -1.7 5,663,268 + PFLU_RS25355 0.65 +0.0 5,663,268 + PFLU_RS25355 0.65 +0.1 5,663,268 + PFLU_RS25355 0.65 +2.1 5,663,269 - PFLU_RS25355 0.65 -0.6 5,663,436 + -0.7 5,663,436 + +1.8 5,663,436 + -0.2 5,663,437 - -1.9 5,663,437 - -0.3 5,663,474 + -0.3 5,663,474 + +0.1 5,663,475 - +0.9 5,663,475 - +1.8 5,663,496 + -0.3 5,663,496 + -0.8 5,663,496 + -0.8 5,663,497 - -3.2 5,663,497 - -2.0 5,663,497 - -2.9 5,663,497 - -4.0 5,663,497 - -0.4 5,663,497 - -1.5 5,663,497 - +0.5 5,663,497 - -1.1 5,663,497 - -0.0 5,663,497 - -1.9 5,663,497 - -2.0 5,663,502 - -0.5 5,663,502 - +0.3 5,663,502 - -0.8 5,663,502 - -1.5 5,663,502 - +0.4 5,663,502 - -1.0 5,663,502 - +1.8 5,663,502 - +0.3 5,663,505 - +1.5 5,663,505 - +1.0 5,663,505 - -1.1 5,663,505 - -1.6 5,663,505 - +0.4 5,663,562 + PFLU_RS25360 0.10 -0.8 5,663,562 + PFLU_RS25360 0.10 +2.1 5,663,562 + PFLU_RS25360 0.10 -0.3 5,663,562 + PFLU_RS25360 0.10 +0.5 5,663,562 + PFLU_RS25360 0.10 +0.1 5,663,562 + PFLU_RS25360 0.10 +0.1 5,663,562 + PFLU_RS25360 0.10 -2.1 5,663,563 - PFLU_RS25360 0.10 +0.1 5,663,563 - PFLU_RS25360 0.10 -2.3 5,663,563 - PFLU_RS25360 0.10 -2.5 5,663,563 - PFLU_RS25360 0.10 -2.5 5,663,563 - PFLU_RS25360 0.10 -1.2 5,663,563 - PFLU_RS25360 0.10 -1.6 5,663,563 - PFLU_RS25360 0.10 -3.0 5,663,563 - PFLU_RS25360 0.10 +0.3 5,663,563 - PFLU_RS25360 0.10 -2.2 5,663,563 - PFLU_RS25360 0.10 -1.4 5,663,563 - PFLU_RS25360 0.10 -2.1 5,663,563 - PFLU_RS25360 0.10 +0.5 5,663,563 - PFLU_RS25360 0.10 -2.9 5,663,563 - PFLU_RS25360 0.10 -1.2 5,663,563 - PFLU_RS25360 0.10 -1.6 5,664,578 + +0.5 5,664,579 - +0.1 5,664,579 - -3.1 5,664,579 - +2.8 5,664,579 - +1.2 5,664,579 - +1.3 5,664,579 - -0.1 5,664,579 - +1.6 5,664,579 - -0.2 5,664,579 - -0.8 5,664,618 - -1.8 5,664,618 - +1.2 5,664,630 + +1.7 5,664,630 + +1.1 5,664,631 - +0.9 5,664,631 - +1.3 5,664,645 + +0.2 5,664,646 - +0.3 5,664,690 + +2.6 5,664,690 + +0.1 5,664,690 + +2.5 5,664,690 + +0.3 5,664,691 - +0.6 5,664,691 - +0.3 5,664,691 - -0.9 5,664,691 - -0.2
Or see this region's nucleotide sequence