Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22665

Experiment: L-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS22660 and PFLU_RS22665 are separated by 2 nucleotidesPFLU_RS22665 and PFLU_RS22670 are separated by 75 nucleotides PFLU_RS22660: PFLU_RS22660 - serine acetyltransferase, at 5,102,095 to 5,103,087 _RS22660 PFLU_RS22665: PFLU_RS22665 - alanyl-tRNA editing protein, at 5,103,090 to 5,103,818 _RS22665 PFLU_RS22670: PFLU_RS22670 - 2-methylcitrate dehydratase, at 5,103,894 to 5,105,378 _RS22670 Position (kb) 5103 5104Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5102.248 kb on + strand, within PFLU_RS22660at 5102.249 kb on - strand, within PFLU_RS22660at 5102.254 kb on + strand, within PFLU_RS22660at 5102.254 kb on + strand, within PFLU_RS22660at 5102.302 kb on + strand, within PFLU_RS22660at 5102.302 kb on + strand, within PFLU_RS22660at 5102.303 kb on - strand, within PFLU_RS22660at 5102.303 kb on - strand, within PFLU_RS22660at 5102.303 kb on - strand, within PFLU_RS22660at 5102.326 kb on + strand, within PFLU_RS22660at 5102.326 kb on + strand, within PFLU_RS22660at 5102.326 kb on + strand, within PFLU_RS22660at 5102.326 kb on + strand, within PFLU_RS22660at 5102.326 kb on + strand, within PFLU_RS22660at 5102.327 kb on - strand, within PFLU_RS22660at 5102.327 kb on - strand, within PFLU_RS22660at 5102.327 kb on - strand, within PFLU_RS22660at 5102.327 kb on - strand, within PFLU_RS22660at 5102.349 kb on - strand, within PFLU_RS22660at 5102.530 kb on + strand, within PFLU_RS22660at 5102.530 kb on + strand, within PFLU_RS22660at 5102.530 kb on + strand, within PFLU_RS22660at 5102.530 kb on + strand, within PFLU_RS22660at 5102.531 kb on - strand, within PFLU_RS22660at 5102.531 kb on - strand, within PFLU_RS22660at 5102.531 kb on - strand, within PFLU_RS22660at 5102.531 kb on - strand, within PFLU_RS22660at 5102.531 kb on - strand, within PFLU_RS22660at 5102.531 kb on - strand, within PFLU_RS22660at 5102.531 kb on - strand, within PFLU_RS22660at 5102.531 kb on - strand, within PFLU_RS22660at 5102.647 kb on + strand, within PFLU_RS22660at 5102.647 kb on + strand, within PFLU_RS22660at 5102.648 kb on - strand, within PFLU_RS22660at 5102.648 kb on - strand, within PFLU_RS22660at 5102.648 kb on - strand, within PFLU_RS22660at 5102.651 kb on + strand, within PFLU_RS22660at 5102.651 kb on + strand, within PFLU_RS22660at 5102.651 kb on + strand, within PFLU_RS22660at 5102.651 kb on + strand, within PFLU_RS22660at 5102.651 kb on + strand, within PFLU_RS22660at 5102.651 kb on + strand, within PFLU_RS22660at 5102.651 kb on + strand, within PFLU_RS22660at 5102.651 kb on + strand, within PFLU_RS22660at 5102.651 kb on + strand, within PFLU_RS22660at 5102.651 kb on + strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.652 kb on - strand, within PFLU_RS22660at 5102.669 kb on + strand, within PFLU_RS22660at 5102.669 kb on + strand, within PFLU_RS22660at 5102.669 kb on + strand, within PFLU_RS22660at 5102.669 kb on + strand, within PFLU_RS22660at 5102.669 kb on + strand, within PFLU_RS22660at 5102.669 kb on + strand, within PFLU_RS22660at 5102.669 kb on + strand, within PFLU_RS22660at 5102.669 kb on + strand, within PFLU_RS22660at 5102.669 kb on + strand, within PFLU_RS22660at 5102.669 kb on + strand, within PFLU_RS22660at 5102.669 kb on + strand, within PFLU_RS22660at 5102.669 kb on + strand, within PFLU_RS22660at 5102.670 kb on - strand, within PFLU_RS22660at 5102.670 kb on - strand, within PFLU_RS22660at 5102.670 kb on - strand, within PFLU_RS22660at 5102.670 kb on - strand, within PFLU_RS22660at 5102.670 kb on - strand, within PFLU_RS22660at 5102.670 kb on - strand, within PFLU_RS22660at 5102.670 kb on - strand, within PFLU_RS22660at 5102.670 kb on - strand, within PFLU_RS22660at 5102.670 kb on - strand, within PFLU_RS22660at 5102.670 kb on - strand, within PFLU_RS22660at 5102.670 kb on - strand, within PFLU_RS22660at 5102.670 kb on - strand, within PFLU_RS22660at 5102.674 kb on - strand, within PFLU_RS22660at 5102.674 kb on - strand, within PFLU_RS22660at 5102.674 kb on - strand, within PFLU_RS22660at 5102.674 kb on - strand, within PFLU_RS22660at 5102.779 kb on + strand, within PFLU_RS22660at 5102.779 kb on + strand, within PFLU_RS22660at 5102.779 kb on + strand, within PFLU_RS22660at 5102.779 kb on + strand, within PFLU_RS22660at 5102.780 kb on - strand, within PFLU_RS22660at 5102.780 kb on - strand, within PFLU_RS22660at 5103.101 kb on + strandat 5103.101 kb on + strandat 5103.210 kb on + strand, within PFLU_RS22665at 5103.211 kb on - strand, within PFLU_RS22665at 5103.318 kb on - strand, within PFLU_RS22665at 5103.609 kb on + strand, within PFLU_RS22665at 5103.860 kb on + strandat 5103.860 kb on + strandat 5103.860 kb on + strandat 5103.861 kb on - strandat 5103.869 kb on + strandat 5103.869 kb on + strandat 5103.870 kb on - strandat 5103.895 kb on + strandat 5103.895 kb on + strandat 5103.896 kb on - strandat 5103.896 kb on - strandat 5104.162 kb on + strand, within PFLU_RS22670at 5104.162 kb on + strand, within PFLU_RS22670at 5104.163 kb on - strand, within PFLU_RS22670at 5104.163 kb on - strand, within PFLU_RS22670at 5104.175 kb on - strand, within PFLU_RS22670at 5104.252 kb on + strand, within PFLU_RS22670at 5104.300 kb on + strand, within PFLU_RS22670at 5104.300 kb on + strand, within PFLU_RS22670at 5104.300 kb on + strand, within PFLU_RS22670at 5104.300 kb on + strand, within PFLU_RS22670at 5104.300 kb on + strand, within PFLU_RS22670at 5104.300 kb on + strand, within PFLU_RS22670at 5104.300 kb on + strand, within PFLU_RS22670at 5104.300 kb on + strand, within PFLU_RS22670at 5104.300 kb on + strand, within PFLU_RS22670at 5104.300 kb on + strand, within PFLU_RS22670at 5104.301 kb on - strand, within PFLU_RS22670at 5104.301 kb on - strand, within PFLU_RS22670at 5104.301 kb on - strand, within PFLU_RS22670at 5104.301 kb on - strand, within PFLU_RS22670at 5104.301 kb on - strand, within PFLU_RS22670at 5104.301 kb on - strand, within PFLU_RS22670at 5104.301 kb on - strand, within PFLU_RS22670at 5104.392 kb on - strand, within PFLU_RS22670at 5104.392 kb on - strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.513 kb on + strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.514 kb on - strand, within PFLU_RS22670at 5104.603 kb on + strand, within PFLU_RS22670at 5104.604 kb on - strand, within PFLU_RS22670at 5104.745 kb on - strand, within PFLU_RS22670at 5104.745 kb on - strand, within PFLU_RS22670at 5104.748 kb on + strand, within PFLU_RS22670at 5104.748 kb on + strand, within PFLU_RS22670at 5104.748 kb on + strand, within PFLU_RS22670at 5104.748 kb on + strand, within PFLU_RS22670at 5104.748 kb on + strand, within PFLU_RS22670at 5104.748 kb on + strand, within PFLU_RS22670at 5104.748 kb on + strand, within PFLU_RS22670at 5104.749 kb on - strand, within PFLU_RS22670at 5104.749 kb on - strand, within PFLU_RS22670at 5104.749 kb on - strand, within PFLU_RS22670at 5104.749 kb on - strand, within PFLU_RS22670at 5104.749 kb on - strand, within PFLU_RS22670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
remove
5,102,248 + PFLU_RS22660 0.15 -0.8
5,102,249 - PFLU_RS22660 0.16 +0.3
5,102,254 + PFLU_RS22660 0.16 -0.7
5,102,254 + PFLU_RS22660 0.16 +1.2
5,102,302 + PFLU_RS22660 0.21 -0.4
5,102,302 + PFLU_RS22660 0.21 +0.7
5,102,303 - PFLU_RS22660 0.21 +1.0
5,102,303 - PFLU_RS22660 0.21 +0.1
5,102,303 - PFLU_RS22660 0.21 -0.4
5,102,326 + PFLU_RS22660 0.23 +0.7
5,102,326 + PFLU_RS22660 0.23 -0.4
5,102,326 + PFLU_RS22660 0.23 -0.4
5,102,326 + PFLU_RS22660 0.23 -0.2
5,102,326 + PFLU_RS22660 0.23 -1.7
5,102,327 - PFLU_RS22660 0.23 -1.2
5,102,327 - PFLU_RS22660 0.23 -2.5
5,102,327 - PFLU_RS22660 0.23 -0.3
5,102,327 - PFLU_RS22660 0.23 -0.7
5,102,349 - PFLU_RS22660 0.26 -1.8
5,102,530 + PFLU_RS22660 0.44 +1.2
5,102,530 + PFLU_RS22660 0.44 -0.1
5,102,530 + PFLU_RS22660 0.44 +2.3
5,102,530 + PFLU_RS22660 0.44 -0.6
5,102,531 - PFLU_RS22660 0.44 -1.9
5,102,531 - PFLU_RS22660 0.44 -1.0
5,102,531 - PFLU_RS22660 0.44 +0.2
5,102,531 - PFLU_RS22660 0.44 -2.5
5,102,531 - PFLU_RS22660 0.44 -0.3
5,102,531 - PFLU_RS22660 0.44 +1.1
5,102,531 - PFLU_RS22660 0.44 +0.3
5,102,531 - PFLU_RS22660 0.44 +0.7
5,102,647 + PFLU_RS22660 0.56 -1.3
5,102,647 + PFLU_RS22660 0.56 -2.3
5,102,648 - PFLU_RS22660 0.56 -0.2
5,102,648 - PFLU_RS22660 0.56 +0.2
5,102,648 - PFLU_RS22660 0.56 -1.5
5,102,651 + PFLU_RS22660 0.56 +0.2
5,102,651 + PFLU_RS22660 0.56 -1.3
5,102,651 + PFLU_RS22660 0.56 +0.5
5,102,651 + PFLU_RS22660 0.56 +0.9
5,102,651 + PFLU_RS22660 0.56 +0.0
5,102,651 + PFLU_RS22660 0.56 +0.5
5,102,651 + PFLU_RS22660 0.56 -0.1
5,102,651 + PFLU_RS22660 0.56 +0.8
5,102,651 + PFLU_RS22660 0.56 +1.4
5,102,651 + PFLU_RS22660 0.56 -1.2
5,102,652 - PFLU_RS22660 0.56 +0.6
5,102,652 - PFLU_RS22660 0.56 +0.4
5,102,652 - PFLU_RS22660 0.56 +1.4
5,102,652 - PFLU_RS22660 0.56 -2.5
5,102,652 - PFLU_RS22660 0.56 +1.4
5,102,652 - PFLU_RS22660 0.56 +0.2
5,102,652 - PFLU_RS22660 0.56 -0.2
5,102,652 - PFLU_RS22660 0.56 -1.2
5,102,652 - PFLU_RS22660 0.56 -2.5
5,102,652 - PFLU_RS22660 0.56 +1.3
5,102,652 - PFLU_RS22660 0.56 -0.8
5,102,652 - PFLU_RS22660 0.56 +0.4
5,102,652 - PFLU_RS22660 0.56 +0.3
5,102,652 - PFLU_RS22660 0.56 +0.7
5,102,652 - PFLU_RS22660 0.56 -0.1
5,102,652 - PFLU_RS22660 0.56 -0.5
5,102,652 - PFLU_RS22660 0.56 +0.5
5,102,652 - PFLU_RS22660 0.56 -2.5
5,102,652 - PFLU_RS22660 0.56 -2.2
5,102,652 - PFLU_RS22660 0.56 -2.0
5,102,652 - PFLU_RS22660 0.56 +0.2
5,102,669 + PFLU_RS22660 0.58 +0.5
5,102,669 + PFLU_RS22660 0.58 +0.4
5,102,669 + PFLU_RS22660 0.58 -1.5
5,102,669 + PFLU_RS22660 0.58 +1.6
5,102,669 + PFLU_RS22660 0.58 -0.7
5,102,669 + PFLU_RS22660 0.58 +0.8
5,102,669 + PFLU_RS22660 0.58 +1.7
5,102,669 + PFLU_RS22660 0.58 -1.2
5,102,669 + PFLU_RS22660 0.58 +0.0
5,102,669 + PFLU_RS22660 0.58 +0.9
5,102,669 + PFLU_RS22660 0.58 -2.9
5,102,669 + PFLU_RS22660 0.58 -0.4
5,102,670 - PFLU_RS22660 0.58 +0.3
5,102,670 - PFLU_RS22660 0.58 +0.2
5,102,670 - PFLU_RS22660 0.58 +0.1
5,102,670 - PFLU_RS22660 0.58 -0.1
5,102,670 - PFLU_RS22660 0.58 +1.0
5,102,670 - PFLU_RS22660 0.58 +0.8
5,102,670 - PFLU_RS22660 0.58 +0.4
5,102,670 - PFLU_RS22660 0.58 +1.1
5,102,670 - PFLU_RS22660 0.58 +0.1
5,102,670 - PFLU_RS22660 0.58 +0.7
5,102,670 - PFLU_RS22660 0.58 +1.2
5,102,670 - PFLU_RS22660 0.58 -1.9
5,102,674 - PFLU_RS22660 0.58 -1.8
5,102,674 - PFLU_RS22660 0.58 +1.6
5,102,674 - PFLU_RS22660 0.58 +0.3
5,102,674 - PFLU_RS22660 0.58 -3.2
5,102,779 + PFLU_RS22660 0.69 +0.8
5,102,779 + PFLU_RS22660 0.69 +0.4
5,102,779 + PFLU_RS22660 0.69 -0.2
5,102,779 + PFLU_RS22660 0.69 -2.2
5,102,780 - PFLU_RS22660 0.69 +1.3
5,102,780 - PFLU_RS22660 0.69 +0.6
5,103,101 + +0.4
5,103,101 + -0.1
5,103,210 + PFLU_RS22665 0.16 -2.0
5,103,211 - PFLU_RS22665 0.17 -1.0
5,103,318 - PFLU_RS22665 0.31 -1.0
5,103,609 + PFLU_RS22665 0.71 -0.3
5,103,860 + -2.3
5,103,860 + +1.3
5,103,860 + +0.4
5,103,861 - -0.8
5,103,869 + -0.5
5,103,869 + -0.0
5,103,870 - +0.3
5,103,895 + -3.0
5,103,895 + -1.7
5,103,896 - +0.1
5,103,896 - +2.1
5,104,162 + PFLU_RS22670 0.18 +1.3
5,104,162 + PFLU_RS22670 0.18 -2.2
5,104,163 - PFLU_RS22670 0.18 +1.4
5,104,163 - PFLU_RS22670 0.18 +0.5
5,104,175 - PFLU_RS22670 0.19 +0.8
5,104,252 + PFLU_RS22670 0.24 +2.0
5,104,300 + PFLU_RS22670 0.27 -1.5
5,104,300 + PFLU_RS22670 0.27 +0.7
5,104,300 + PFLU_RS22670 0.27 -0.7
5,104,300 + PFLU_RS22670 0.27 +0.2
5,104,300 + PFLU_RS22670 0.27 -1.0
5,104,300 + PFLU_RS22670 0.27 +0.9
5,104,300 + PFLU_RS22670 0.27 +2.0
5,104,300 + PFLU_RS22670 0.27 +0.7
5,104,300 + PFLU_RS22670 0.27 -0.0
5,104,300 + PFLU_RS22670 0.27 -1.6
5,104,301 - PFLU_RS22670 0.27 -1.2
5,104,301 - PFLU_RS22670 0.27 +1.1
5,104,301 - PFLU_RS22670 0.27 -0.4
5,104,301 - PFLU_RS22670 0.27 -1.0
5,104,301 - PFLU_RS22670 0.27 +0.9
5,104,301 - PFLU_RS22670 0.27 -1.3
5,104,301 - PFLU_RS22670 0.27 +0.0
5,104,392 - PFLU_RS22670 0.34 -0.1
5,104,392 - PFLU_RS22670 0.34 +1.3
5,104,513 + PFLU_RS22670 0.42 -1.7
5,104,513 + PFLU_RS22670 0.42 -0.9
5,104,513 + PFLU_RS22670 0.42 +0.5
5,104,513 + PFLU_RS22670 0.42 +0.3
5,104,513 + PFLU_RS22670 0.42 +0.9
5,104,513 + PFLU_RS22670 0.42 +0.6
5,104,513 + PFLU_RS22670 0.42 -1.9
5,104,513 + PFLU_RS22670 0.42 -2.5
5,104,513 + PFLU_RS22670 0.42 +1.5
5,104,513 + PFLU_RS22670 0.42 +0.1
5,104,513 + PFLU_RS22670 0.42 -1.1
5,104,513 + PFLU_RS22670 0.42 +4.4
5,104,513 + PFLU_RS22670 0.42 +2.7
5,104,513 + PFLU_RS22670 0.42 -1.5
5,104,513 + PFLU_RS22670 0.42 +1.2
5,104,513 + PFLU_RS22670 0.42 -1.6
5,104,513 + PFLU_RS22670 0.42 +1.9
5,104,513 + PFLU_RS22670 0.42 -1.4
5,104,513 + PFLU_RS22670 0.42 +2.1
5,104,514 - PFLU_RS22670 0.42 -2.3
5,104,514 - PFLU_RS22670 0.42 -0.9
5,104,514 - PFLU_RS22670 0.42 -0.1
5,104,514 - PFLU_RS22670 0.42 +1.8
5,104,514 - PFLU_RS22670 0.42 +1.4
5,104,514 - PFLU_RS22670 0.42 -1.0
5,104,514 - PFLU_RS22670 0.42 +0.8
5,104,514 - PFLU_RS22670 0.42 +1.9
5,104,514 - PFLU_RS22670 0.42 +0.6
5,104,514 - PFLU_RS22670 0.42 -1.7
5,104,514 - PFLU_RS22670 0.42 -0.5
5,104,514 - PFLU_RS22670 0.42 +1.8
5,104,514 - PFLU_RS22670 0.42 -1.4
5,104,514 - PFLU_RS22670 0.42 -0.5
5,104,514 - PFLU_RS22670 0.42 +1.6
5,104,514 - PFLU_RS22670 0.42 -1.0
5,104,603 + PFLU_RS22670 0.48 +1.2
5,104,604 - PFLU_RS22670 0.48 +2.7
5,104,745 - PFLU_RS22670 0.57 +0.5
5,104,745 - PFLU_RS22670 0.57 -2.7
5,104,748 + PFLU_RS22670 0.58 +1.0
5,104,748 + PFLU_RS22670 0.58 -0.5
5,104,748 + PFLU_RS22670 0.58 -1.2
5,104,748 + PFLU_RS22670 0.58 -2.0
5,104,748 + PFLU_RS22670 0.58 -0.8
5,104,748 + PFLU_RS22670 0.58 -1.4
5,104,748 + PFLU_RS22670 0.58 +0.9
5,104,749 - PFLU_RS22670 0.58 +1.1
5,104,749 - PFLU_RS22670 0.58 +1.4
5,104,749 - PFLU_RS22670 0.58 +1.7
5,104,749 - PFLU_RS22670 0.58 +0.2
5,104,749 - PFLU_RS22670 0.58 +0.5

Or see this region's nucleotide sequence