Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS20870 and PFLU_RS20875 overlap by 17 nucleotides PFLU_RS20875 and PFLU_RS20880 are separated by 148 nucleotides PFLU_RS20880 and PFLU_RS20885 are separated by 261 nucleotides
PFLU_RS20870: PFLU_RS20870 - hypothetical protein, at 4,690,433 to 4,690,813
_RS20870
PFLU_RS20875: PFLU_RS20875 - hypothetical protein, at 4,690,797 to 4,691,516
_RS20875
PFLU_RS20880: PFLU_RS20880 - hypothetical protein, at 4,691,665 to 4,692,912
_RS20880
PFLU_RS20885: PFLU_RS20885 - hypothetical protein, at 4,693,174 to 4,693,899
_RS20885
Position (kb) 4691
4692
4693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4690.840 kb on - strand at 4690.894 kb on - strand, within PFLU_RS20875 at 4690.894 kb on - strand, within PFLU_RS20875 at 4690.896 kb on - strand, within PFLU_RS20875 at 4690.913 kb on - strand, within PFLU_RS20875 at 4690.913 kb on - strand, within PFLU_RS20875 at 4690.996 kb on + strand, within PFLU_RS20875 at 4690.996 kb on + strand, within PFLU_RS20875 at 4690.996 kb on + strand, within PFLU_RS20875 at 4691.275 kb on + strand, within PFLU_RS20875 at 4691.283 kb on + strand, within PFLU_RS20875 at 4691.283 kb on + strand, within PFLU_RS20875 at 4691.283 kb on + strand, within PFLU_RS20875 at 4691.283 kb on + strand, within PFLU_RS20875 at 4691.283 kb on + strand, within PFLU_RS20875 at 4691.283 kb on + strand, within PFLU_RS20875 at 4691.283 kb on + strand, within PFLU_RS20875 at 4691.284 kb on - strand, within PFLU_RS20875 at 4691.284 kb on - strand, within PFLU_RS20875 at 4691.467 kb on - strand at 4691.489 kb on + strand at 4691.490 kb on - strand at 4691.519 kb on - strand at 4691.575 kb on + strand at 4691.575 kb on + strand at 4691.576 kb on - strand at 4691.576 kb on - strand at 4691.594 kb on - strand at 4691.664 kb on + strand at 4691.665 kb on - strand at 4691.665 kb on - strand at 4691.828 kb on - strand, within PFLU_RS20880 at 4691.948 kb on - strand, within PFLU_RS20880 at 4691.948 kb on - strand, within PFLU_RS20880 at 4691.948 kb on - strand, within PFLU_RS20880 at 4691.948 kb on - strand, within PFLU_RS20880 at 4691.986 kb on + strand, within PFLU_RS20880 at 4691.987 kb on - strand, within PFLU_RS20880 at 4691.987 kb on - strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4692.091 kb on + strand, within PFLU_RS20880 at 4692.400 kb on + strand, within PFLU_RS20880 at 4692.400 kb on + strand, within PFLU_RS20880 at 4692.400 kb on + strand, within PFLU_RS20880 at 4692.400 kb on + strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.714 kb on + strand, within PFLU_RS20880 at 4692.714 kb on + strand, within PFLU_RS20880 at 4692.874 kb on + strand at 4692.874 kb on + strand at 4692.875 kb on - strand at 4692.875 kb on - strand at 4692.875 kb on - strand at 4692.875 kb on - strand at 4692.875 kb on - strand at 4692.915 kb on - strand at 4693.009 kb on - strand at 4693.009 kb on - strand at 4693.009 kb on - strand at 4693.009 kb on - strand at 4693.009 kb on - strand at 4693.022 kb on - strand at 4693.070 kb on + strand at 4693.186 kb on + strand at 4693.186 kb on + strand at 4693.186 kb on + strand at 4693.186 kb on + strand at 4693.186 kb on + strand at 4693.187 kb on - strand at 4693.187 kb on - strand at 4693.187 kb on - strand at 4693.359 kb on - strand, within PFLU_RS20885 at 4693.359 kb on - strand, within PFLU_RS20885 at 4693.379 kb on + strand, within PFLU_RS20885 at 4693.379 kb on + strand, within PFLU_RS20885 at 4693.380 kb on - strand, within PFLU_RS20885 at 4693.380 kb on - strand, within PFLU_RS20885 at 4693.532 kb on + strand, within PFLU_RS20885 at 4693.532 kb on + strand, within PFLU_RS20885 at 4693.577 kb on + strand, within PFLU_RS20885 at 4693.577 kb on + strand, within PFLU_RS20885 at 4693.578 kb on - strand, within PFLU_RS20885 at 4693.658 kb on + strand, within PFLU_RS20885 at 4693.658 kb on + strand, within PFLU_RS20885 at 4693.658 kb on + strand, within PFLU_RS20885 at 4693.659 kb on - strand, within PFLU_RS20885 at 4693.659 kb on - strand, within PFLU_RS20885
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,690,840 - +1.7 4,690,894 - PFLU_RS20875 0.13 +0.1 4,690,894 - PFLU_RS20875 0.13 +0.2 4,690,896 - PFLU_RS20875 0.14 +0.6 4,690,913 - PFLU_RS20875 0.16 +0.9 4,690,913 - PFLU_RS20875 0.16 +0.3 4,690,996 + PFLU_RS20875 0.28 +0.1 4,690,996 + PFLU_RS20875 0.28 +0.1 4,690,996 + PFLU_RS20875 0.28 -0.6 4,691,275 + PFLU_RS20875 0.66 +1.0 4,691,283 + PFLU_RS20875 0.68 -1.7 4,691,283 + PFLU_RS20875 0.68 +0.1 4,691,283 + PFLU_RS20875 0.68 +0.9 4,691,283 + PFLU_RS20875 0.68 +0.4 4,691,283 + PFLU_RS20875 0.68 +0.9 4,691,283 + PFLU_RS20875 0.68 -1.7 4,691,283 + PFLU_RS20875 0.68 +1.1 4,691,284 - PFLU_RS20875 0.68 -0.9 4,691,284 - PFLU_RS20875 0.68 +0.2 4,691,467 - -0.9 4,691,489 + -0.9 4,691,490 - -2.8 4,691,519 - -3.1 4,691,575 + +0.7 4,691,575 + -1.3 4,691,576 - -0.9 4,691,576 - +0.4 4,691,594 - +0.6 4,691,664 + +0.5 4,691,665 - -0.7 4,691,665 - -0.3 4,691,828 - PFLU_RS20880 0.13 -0.6 4,691,948 - PFLU_RS20880 0.23 -0.3 4,691,948 - PFLU_RS20880 0.23 +1.5 4,691,948 - PFLU_RS20880 0.23 -1.0 4,691,948 - PFLU_RS20880 0.23 +1.2 4,691,986 + PFLU_RS20880 0.26 -2.1 4,691,987 - PFLU_RS20880 0.26 +0.8 4,691,987 - PFLU_RS20880 0.26 -1.2 4,691,989 + PFLU_RS20880 0.26 +0.3 4,691,989 + PFLU_RS20880 0.26 -2.9 4,691,989 + PFLU_RS20880 0.26 -1.0 4,691,989 + PFLU_RS20880 0.26 -0.7 4,691,989 + PFLU_RS20880 0.26 +0.7 4,691,989 + PFLU_RS20880 0.26 +0.6 4,691,989 + PFLU_RS20880 0.26 +0.7 4,691,990 - PFLU_RS20880 0.26 +0.3 4,691,990 - PFLU_RS20880 0.26 -0.5 4,691,990 - PFLU_RS20880 0.26 -2.6 4,692,091 + PFLU_RS20880 0.34 +0.1 4,692,400 + PFLU_RS20880 0.59 -0.5 4,692,400 + PFLU_RS20880 0.59 +1.2 4,692,400 + PFLU_RS20880 0.59 +0.7 4,692,400 + PFLU_RS20880 0.59 -2.1 4,692,401 - PFLU_RS20880 0.59 +0.8 4,692,401 - PFLU_RS20880 0.59 +0.1 4,692,401 - PFLU_RS20880 0.59 +1.7 4,692,406 + PFLU_RS20880 0.59 +3.1 4,692,406 + PFLU_RS20880 0.59 +0.1 4,692,406 + PFLU_RS20880 0.59 +0.6 4,692,406 + PFLU_RS20880 0.59 -0.3 4,692,406 + PFLU_RS20880 0.59 -0.3 4,692,406 + PFLU_RS20880 0.59 +1.0 4,692,406 + PFLU_RS20880 0.59 -0.9 4,692,406 + PFLU_RS20880 0.59 +0.9 4,692,406 + PFLU_RS20880 0.59 +1.3 4,692,406 + PFLU_RS20880 0.59 +0.5 4,692,406 + PFLU_RS20880 0.59 -3.3 4,692,406 + PFLU_RS20880 0.59 +1.5 4,692,406 + PFLU_RS20880 0.59 -2.7 4,692,406 + PFLU_RS20880 0.59 +1.7 4,692,406 + PFLU_RS20880 0.59 -0.7 4,692,407 - PFLU_RS20880 0.59 -0.3 4,692,407 - PFLU_RS20880 0.59 +1.5 4,692,407 - PFLU_RS20880 0.59 -3.2 4,692,407 - PFLU_RS20880 0.59 -0.3 4,692,407 - PFLU_RS20880 0.59 -1.2 4,692,407 - PFLU_RS20880 0.59 -1.0 4,692,407 - PFLU_RS20880 0.59 +1.1 4,692,714 + PFLU_RS20880 0.84 +1.6 4,692,714 + PFLU_RS20880 0.84 +0.5 4,692,874 + +0.7 4,692,874 + +0.7 4,692,875 - -2.5 4,692,875 - -2.4 4,692,875 - -2.3 4,692,875 - +0.3 4,692,875 - +1.2 4,692,915 - +0.5 4,693,009 - -1.9 4,693,009 - +2.4 4,693,009 - +0.1 4,693,009 - -1.3 4,693,009 - -1.9 4,693,022 - -0.2 4,693,070 + +1.1 4,693,186 + -2.6 4,693,186 + -0.1 4,693,186 + -1.7 4,693,186 + +0.7 4,693,186 + -1.1 4,693,187 - +1.4 4,693,187 - +1.3 4,693,187 - +2.0 4,693,359 - PFLU_RS20885 0.25 +1.0 4,693,359 - PFLU_RS20885 0.25 +0.6 4,693,379 + PFLU_RS20885 0.28 +2.5 4,693,379 + PFLU_RS20885 0.28 +1.0 4,693,380 - PFLU_RS20885 0.28 -1.1 4,693,380 - PFLU_RS20885 0.28 +0.2 4,693,532 + PFLU_RS20885 0.49 +2.4 4,693,532 + PFLU_RS20885 0.49 +0.2 4,693,577 + PFLU_RS20885 0.56 +0.9 4,693,577 + PFLU_RS20885 0.56 +0.6 4,693,578 - PFLU_RS20885 0.56 -2.7 4,693,658 + PFLU_RS20885 0.67 +2.7 4,693,658 + PFLU_RS20885 0.67 +1.6 4,693,658 + PFLU_RS20885 0.67 -2.1 4,693,659 - PFLU_RS20885 0.67 -2.8 4,693,659 - PFLU_RS20885 0.67 +2.2
Or see this region's nucleotide sequence