Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS20875

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS20865 and PFLU_RS20870 are separated by 94 nucleotidesPFLU_RS20870 and PFLU_RS20875 overlap by 17 nucleotidesPFLU_RS20875 and PFLU_RS20880 are separated by 148 nucleotides PFLU_RS20865: PFLU_RS20865 - DUF1963 domain-containing protein, at 4,689,643 to 4,690,338 _RS20865 PFLU_RS20870: PFLU_RS20870 - hypothetical protein, at 4,690,433 to 4,690,813 _RS20870 PFLU_RS20875: PFLU_RS20875 - hypothetical protein, at 4,690,797 to 4,691,516 _RS20875 PFLU_RS20880: PFLU_RS20880 - hypothetical protein, at 4,691,665 to 4,692,912 _RS20880 Position (kb) 4690 4691 4692Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4689.823 kb on + strand, within PFLU_RS20865at 4689.823 kb on + strand, within PFLU_RS20865at 4689.824 kb on - strand, within PFLU_RS20865at 4689.927 kb on + strand, within PFLU_RS20865at 4689.973 kb on - strand, within PFLU_RS20865at 4690.091 kb on + strand, within PFLU_RS20865at 4690.091 kb on + strand, within PFLU_RS20865at 4690.091 kb on + strand, within PFLU_RS20865at 4690.091 kb on + strand, within PFLU_RS20865at 4690.092 kb on - strand, within PFLU_RS20865at 4690.118 kb on + strand, within PFLU_RS20865at 4690.118 kb on + strand, within PFLU_RS20865at 4690.118 kb on + strand, within PFLU_RS20865at 4690.119 kb on - strand, within PFLU_RS20865at 4690.126 kb on + strand, within PFLU_RS20865at 4690.130 kb on - strand, within PFLU_RS20865at 4690.130 kb on - strand, within PFLU_RS20865at 4690.130 kb on - strand, within PFLU_RS20865at 4690.150 kb on + strand, within PFLU_RS20865at 4690.150 kb on + strand, within PFLU_RS20865at 4690.150 kb on + strand, within PFLU_RS20865at 4690.150 kb on + strand, within PFLU_RS20865at 4690.150 kb on + strand, within PFLU_RS20865at 4690.151 kb on - strand, within PFLU_RS20865at 4690.151 kb on - strand, within PFLU_RS20865at 4690.151 kb on - strand, within PFLU_RS20865at 4690.151 kb on - strand, within PFLU_RS20865at 4690.151 kb on - strand, within PFLU_RS20865at 4690.158 kb on + strand, within PFLU_RS20865at 4690.158 kb on + strand, within PFLU_RS20865at 4690.159 kb on - strand, within PFLU_RS20865at 4690.159 kb on - strand, within PFLU_RS20865at 4690.159 kb on - strand, within PFLU_RS20865at 4690.159 kb on - strand, within PFLU_RS20865at 4690.159 kb on - strand, within PFLU_RS20865at 4690.159 kb on - strand, within PFLU_RS20865at 4690.159 kb on - strand, within PFLU_RS20865at 4690.322 kb on - strandat 4690.322 kb on - strandat 4690.322 kb on - strandat 4690.430 kb on + strandat 4690.430 kb on + strandat 4690.430 kb on + strandat 4690.430 kb on + strandat 4690.430 kb on + strandat 4690.430 kb on + strandat 4690.430 kb on + strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.431 kb on - strandat 4690.546 kb on + strand, within PFLU_RS20870at 4690.556 kb on + strand, within PFLU_RS20870at 4690.557 kb on - strand, within PFLU_RS20870at 4690.840 kb on - strandat 4690.894 kb on - strand, within PFLU_RS20875at 4690.894 kb on - strand, within PFLU_RS20875at 4690.896 kb on - strand, within PFLU_RS20875at 4690.913 kb on - strand, within PFLU_RS20875at 4690.913 kb on - strand, within PFLU_RS20875at 4690.996 kb on + strand, within PFLU_RS20875at 4690.996 kb on + strand, within PFLU_RS20875at 4690.996 kb on + strand, within PFLU_RS20875at 4691.275 kb on + strand, within PFLU_RS20875at 4691.283 kb on + strand, within PFLU_RS20875at 4691.283 kb on + strand, within PFLU_RS20875at 4691.283 kb on + strand, within PFLU_RS20875at 4691.283 kb on + strand, within PFLU_RS20875at 4691.283 kb on + strand, within PFLU_RS20875at 4691.283 kb on + strand, within PFLU_RS20875at 4691.283 kb on + strand, within PFLU_RS20875at 4691.284 kb on - strand, within PFLU_RS20875at 4691.284 kb on - strand, within PFLU_RS20875at 4691.467 kb on - strandat 4691.489 kb on + strandat 4691.490 kb on - strandat 4691.519 kb on - strandat 4691.575 kb on + strandat 4691.575 kb on + strandat 4691.576 kb on - strandat 4691.576 kb on - strandat 4691.594 kb on - strandat 4691.664 kb on + strandat 4691.665 kb on - strandat 4691.665 kb on - strandat 4691.828 kb on - strand, within PFLU_RS20880at 4691.948 kb on - strand, within PFLU_RS20880at 4691.948 kb on - strand, within PFLU_RS20880at 4691.948 kb on - strand, within PFLU_RS20880at 4691.948 kb on - strand, within PFLU_RS20880at 4691.986 kb on + strand, within PFLU_RS20880at 4691.987 kb on - strand, within PFLU_RS20880at 4691.987 kb on - strand, within PFLU_RS20880at 4691.989 kb on + strand, within PFLU_RS20880at 4691.989 kb on + strand, within PFLU_RS20880at 4691.989 kb on + strand, within PFLU_RS20880at 4691.989 kb on + strand, within PFLU_RS20880at 4691.989 kb on + strand, within PFLU_RS20880at 4691.989 kb on + strand, within PFLU_RS20880at 4691.989 kb on + strand, within PFLU_RS20880at 4691.990 kb on - strand, within PFLU_RS20880at 4691.990 kb on - strand, within PFLU_RS20880at 4691.990 kb on - strand, within PFLU_RS20880at 4692.091 kb on + strand, within PFLU_RS20880at 4692.400 kb on + strand, within PFLU_RS20880at 4692.400 kb on + strand, within PFLU_RS20880at 4692.400 kb on + strand, within PFLU_RS20880at 4692.400 kb on + strand, within PFLU_RS20880at 4692.401 kb on - strand, within PFLU_RS20880at 4692.401 kb on - strand, within PFLU_RS20880at 4692.401 kb on - strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.406 kb on + strand, within PFLU_RS20880at 4692.407 kb on - strand, within PFLU_RS20880at 4692.407 kb on - strand, within PFLU_RS20880at 4692.407 kb on - strand, within PFLU_RS20880at 4692.407 kb on - strand, within PFLU_RS20880at 4692.407 kb on - strand, within PFLU_RS20880at 4692.407 kb on - strand, within PFLU_RS20880at 4692.407 kb on - strand, within PFLU_RS20880

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,689,823 + PFLU_RS20865 0.26 -0.2
4,689,823 + PFLU_RS20865 0.26 +0.6
4,689,824 - PFLU_RS20865 0.26 -0.6
4,689,927 + PFLU_RS20865 0.41 -0.3
4,689,973 - PFLU_RS20865 0.47 +1.5
4,690,091 + PFLU_RS20865 0.64 -1.3
4,690,091 + PFLU_RS20865 0.64 -0.3
4,690,091 + PFLU_RS20865 0.64 -2.4
4,690,091 + PFLU_RS20865 0.64 -1.7
4,690,092 - PFLU_RS20865 0.65 +0.8
4,690,118 + PFLU_RS20865 0.68 +0.3
4,690,118 + PFLU_RS20865 0.68 +1.2
4,690,118 + PFLU_RS20865 0.68 +0.8
4,690,119 - PFLU_RS20865 0.68 -0.3
4,690,126 + PFLU_RS20865 0.69 +0.4
4,690,130 - PFLU_RS20865 0.70 -0.1
4,690,130 - PFLU_RS20865 0.70 +0.1
4,690,130 - PFLU_RS20865 0.70 -0.8
4,690,150 + PFLU_RS20865 0.73 +0.1
4,690,150 + PFLU_RS20865 0.73 -1.6
4,690,150 + PFLU_RS20865 0.73 -0.1
4,690,150 + PFLU_RS20865 0.73 -0.1
4,690,150 + PFLU_RS20865 0.73 +0.0
4,690,151 - PFLU_RS20865 0.73 -0.5
4,690,151 - PFLU_RS20865 0.73 +0.7
4,690,151 - PFLU_RS20865 0.73 +1.0
4,690,151 - PFLU_RS20865 0.73 -1.7
4,690,151 - PFLU_RS20865 0.73 +2.0
4,690,158 + PFLU_RS20865 0.74 +1.4
4,690,158 + PFLU_RS20865 0.74 +0.7
4,690,159 - PFLU_RS20865 0.74 -1.5
4,690,159 - PFLU_RS20865 0.74 -0.5
4,690,159 - PFLU_RS20865 0.74 -2.0
4,690,159 - PFLU_RS20865 0.74 +1.7
4,690,159 - PFLU_RS20865 0.74 +0.2
4,690,159 - PFLU_RS20865 0.74 +2.2
4,690,159 - PFLU_RS20865 0.74 +2.0
4,690,322 - +0.7
4,690,322 - -0.1
4,690,322 - -1.9
4,690,430 + -1.7
4,690,430 + -0.0
4,690,430 + +0.2
4,690,430 + +3.0
4,690,430 + -0.1
4,690,430 + -3.7
4,690,430 + -1.5
4,690,431 - -3.1
4,690,431 - +0.0
4,690,431 - +0.4
4,690,431 - +0.9
4,690,431 - -1.4
4,690,431 - -0.0
4,690,431 - +0.2
4,690,431 - -0.3
4,690,431 - -1.8
4,690,431 - +1.4
4,690,431 - +1.4
4,690,431 - -2.5
4,690,431 - +1.7
4,690,431 - +1.4
4,690,431 - +0.3
4,690,431 - -0.2
4,690,546 + PFLU_RS20870 0.30 -0.9
4,690,556 + PFLU_RS20870 0.32 +0.2
4,690,557 - PFLU_RS20870 0.33 -0.5
4,690,840 - +1.7
4,690,894 - PFLU_RS20875 0.13 +0.1
4,690,894 - PFLU_RS20875 0.13 +0.2
4,690,896 - PFLU_RS20875 0.14 +0.6
4,690,913 - PFLU_RS20875 0.16 +0.9
4,690,913 - PFLU_RS20875 0.16 +0.3
4,690,996 + PFLU_RS20875 0.28 +0.1
4,690,996 + PFLU_RS20875 0.28 +0.1
4,690,996 + PFLU_RS20875 0.28 -0.6
4,691,275 + PFLU_RS20875 0.66 +1.0
4,691,283 + PFLU_RS20875 0.68 -1.7
4,691,283 + PFLU_RS20875 0.68 +0.1
4,691,283 + PFLU_RS20875 0.68 +0.9
4,691,283 + PFLU_RS20875 0.68 +0.4
4,691,283 + PFLU_RS20875 0.68 +0.9
4,691,283 + PFLU_RS20875 0.68 -1.7
4,691,283 + PFLU_RS20875 0.68 +1.1
4,691,284 - PFLU_RS20875 0.68 -0.9
4,691,284 - PFLU_RS20875 0.68 +0.2
4,691,467 - -0.9
4,691,489 + -0.9
4,691,490 - -2.8
4,691,519 - -3.1
4,691,575 + +0.7
4,691,575 + -1.3
4,691,576 - -0.9
4,691,576 - +0.4
4,691,594 - +0.6
4,691,664 + +0.5
4,691,665 - -0.7
4,691,665 - -0.3
4,691,828 - PFLU_RS20880 0.13 -0.6
4,691,948 - PFLU_RS20880 0.23 -0.3
4,691,948 - PFLU_RS20880 0.23 +1.5
4,691,948 - PFLU_RS20880 0.23 -1.0
4,691,948 - PFLU_RS20880 0.23 +1.2
4,691,986 + PFLU_RS20880 0.26 -2.1
4,691,987 - PFLU_RS20880 0.26 +0.8
4,691,987 - PFLU_RS20880 0.26 -1.2
4,691,989 + PFLU_RS20880 0.26 +0.3
4,691,989 + PFLU_RS20880 0.26 -2.9
4,691,989 + PFLU_RS20880 0.26 -1.0
4,691,989 + PFLU_RS20880 0.26 -0.7
4,691,989 + PFLU_RS20880 0.26 +0.7
4,691,989 + PFLU_RS20880 0.26 +0.6
4,691,989 + PFLU_RS20880 0.26 +0.7
4,691,990 - PFLU_RS20880 0.26 +0.3
4,691,990 - PFLU_RS20880 0.26 -0.5
4,691,990 - PFLU_RS20880 0.26 -2.6
4,692,091 + PFLU_RS20880 0.34 +0.1
4,692,400 + PFLU_RS20880 0.59 -0.5
4,692,400 + PFLU_RS20880 0.59 +1.2
4,692,400 + PFLU_RS20880 0.59 +0.7
4,692,400 + PFLU_RS20880 0.59 -2.1
4,692,401 - PFLU_RS20880 0.59 +0.8
4,692,401 - PFLU_RS20880 0.59 +0.1
4,692,401 - PFLU_RS20880 0.59 +1.7
4,692,406 + PFLU_RS20880 0.59 +3.1
4,692,406 + PFLU_RS20880 0.59 +0.1
4,692,406 + PFLU_RS20880 0.59 +0.6
4,692,406 + PFLU_RS20880 0.59 -0.3
4,692,406 + PFLU_RS20880 0.59 -0.3
4,692,406 + PFLU_RS20880 0.59 +1.0
4,692,406 + PFLU_RS20880 0.59 -0.9
4,692,406 + PFLU_RS20880 0.59 +0.9
4,692,406 + PFLU_RS20880 0.59 +1.3
4,692,406 + PFLU_RS20880 0.59 +0.5
4,692,406 + PFLU_RS20880 0.59 -3.3
4,692,406 + PFLU_RS20880 0.59 +1.5
4,692,406 + PFLU_RS20880 0.59 -2.7
4,692,406 + PFLU_RS20880 0.59 +1.7
4,692,406 + PFLU_RS20880 0.59 -0.7
4,692,407 - PFLU_RS20880 0.59 -0.3
4,692,407 - PFLU_RS20880 0.59 +1.5
4,692,407 - PFLU_RS20880 0.59 -3.2
4,692,407 - PFLU_RS20880 0.59 -0.3
4,692,407 - PFLU_RS20880 0.59 -1.2
4,692,407 - PFLU_RS20880 0.59 -1.0
4,692,407 - PFLU_RS20880 0.59 +1.1

Or see this region's nucleotide sequence