Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS18420

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS18415 and PFLU_RS18420 are separated by 71 nucleotidesPFLU_RS18420 and PFLU_RS18425 overlap by 4 nucleotidesPFLU_RS18425 and PFLU_RS18430 are separated by 79 nucleotides PFLU_RS18415: PFLU_RS18415 - 2-hydroxyacid dehydrogenase, at 4,175,365 to 4,176,354 _RS18415 PFLU_RS18420: PFLU_RS18420 - hypothetical protein, at 4,176,426 to 4,176,866 _RS18420 PFLU_RS18425: PFLU_RS18425 - META domain-containing protein, at 4,176,863 to 4,177,267 _RS18425 PFLU_RS18430: PFLU_RS18430 - TlpA family protein disulfide reductase, at 4,177,347 to 4,177,808 _RS18430 Position (kb) 4176 4177Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4175.599 kb on + strand, within PFLU_RS18415at 4175.599 kb on + strand, within PFLU_RS18415at 4175.600 kb on - strand, within PFLU_RS18415at 4175.600 kb on - strand, within PFLU_RS18415at 4175.600 kb on - strand, within PFLU_RS18415at 4175.662 kb on + strand, within PFLU_RS18415at 4175.734 kb on + strand, within PFLU_RS18415at 4175.734 kb on + strand, within PFLU_RS18415at 4175.735 kb on - strand, within PFLU_RS18415at 4175.926 kb on + strand, within PFLU_RS18415at 4175.931 kb on - strand, within PFLU_RS18415at 4175.931 kb on - strand, within PFLU_RS18415at 4176.142 kb on + strand, within PFLU_RS18415at 4176.142 kb on + strand, within PFLU_RS18415at 4176.142 kb on + strand, within PFLU_RS18415at 4176.142 kb on + strand, within PFLU_RS18415at 4176.142 kb on + strand, within PFLU_RS18415at 4176.143 kb on - strand, within PFLU_RS18415at 4176.143 kb on - strand, within PFLU_RS18415at 4176.143 kb on - strand, within PFLU_RS18415at 4176.143 kb on - strand, within PFLU_RS18415at 4176.143 kb on - strand, within PFLU_RS18415at 4176.367 kb on + strandat 4176.367 kb on + strandat 4176.367 kb on + strandat 4176.367 kb on + strandat 4176.367 kb on + strandat 4176.368 kb on - strandat 4176.368 kb on - strandat 4176.368 kb on - strandat 4176.368 kb on - strandat 4176.368 kb on - strandat 4176.368 kb on - strandat 4176.368 kb on - strandat 4176.368 kb on - strandat 4176.368 kb on - strandat 4176.368 kb on - strandat 4176.398 kb on + strandat 4176.398 kb on + strandat 4176.398 kb on + strandat 4176.398 kb on + strandat 4176.398 kb on + strandat 4176.399 kb on - strandat 4176.412 kb on + strandat 4176.412 kb on + strandat 4176.413 kb on - strandat 4176.576 kb on - strand, within PFLU_RS18420at 4176.842 kb on + strandat 4176.842 kb on + strandat 4176.842 kb on + strandat 4176.950 kb on + strand, within PFLU_RS18425at 4176.950 kb on + strand, within PFLU_RS18425at 4176.950 kb on + strand, within PFLU_RS18425at 4176.950 kb on + strand, within PFLU_RS18425at 4176.950 kb on + strand, within PFLU_RS18425at 4176.950 kb on + strand, within PFLU_RS18425at 4176.950 kb on + strand, within PFLU_RS18425at 4176.950 kb on + strand, within PFLU_RS18425at 4176.950 kb on + strand, within PFLU_RS18425at 4176.951 kb on - strand, within PFLU_RS18425at 4176.951 kb on - strand, within PFLU_RS18425at 4176.951 kb on - strand, within PFLU_RS18425at 4176.951 kb on - strand, within PFLU_RS18425at 4176.951 kb on - strand, within PFLU_RS18425at 4177.067 kb on + strand, within PFLU_RS18425at 4177.280 kb on - strandat 4177.280 kb on - strandat 4177.280 kb on - strandat 4177.280 kb on - strandat 4177.280 kb on - strandat 4177.280 kb on - strandat 4177.280 kb on - strandat 4177.296 kb on + strandat 4177.296 kb on + strandat 4177.296 kb on + strandat 4177.297 kb on - strandat 4177.297 kb on - strandat 4177.297 kb on - strandat 4177.297 kb on - strandat 4177.441 kb on + strand, within PFLU_RS18430at 4177.441 kb on + strand, within PFLU_RS18430at 4177.441 kb on + strand, within PFLU_RS18430at 4177.441 kb on + strand, within PFLU_RS18430at 4177.441 kb on + strand, within PFLU_RS18430at 4177.441 kb on + strand, within PFLU_RS18430at 4177.441 kb on + strand, within PFLU_RS18430at 4177.441 kb on + strand, within PFLU_RS18430at 4177.442 kb on - strand, within PFLU_RS18430at 4177.442 kb on - strand, within PFLU_RS18430at 4177.442 kb on - strand, within PFLU_RS18430at 4177.442 kb on - strand, within PFLU_RS18430at 4177.442 kb on - strand, within PFLU_RS18430at 4177.442 kb on - strand, within PFLU_RS18430at 4177.669 kb on + strand, within PFLU_RS18430at 4177.670 kb on - strand, within PFLU_RS18430at 4177.670 kb on - strand, within PFLU_RS18430at 4177.670 kb on - strand, within PFLU_RS18430at 4177.813 kb on + strandat 4177.847 kb on + strandat 4177.848 kb on - strandat 4177.848 kb on - strandat 4177.848 kb on - strandat 4177.857 kb on + strandat 4177.857 kb on + strandat 4177.857 kb on + strandat 4177.858 kb on - strandat 4177.865 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,175,599 + PFLU_RS18415 0.24 +0.5
4,175,599 + PFLU_RS18415 0.24 -0.2
4,175,600 - PFLU_RS18415 0.24 -0.4
4,175,600 - PFLU_RS18415 0.24 -1.3
4,175,600 - PFLU_RS18415 0.24 +1.2
4,175,662 + PFLU_RS18415 0.30 -1.2
4,175,734 + PFLU_RS18415 0.37 +3.1
4,175,734 + PFLU_RS18415 0.37 -1.3
4,175,735 - PFLU_RS18415 0.37 +1.1
4,175,926 + PFLU_RS18415 0.57 -0.5
4,175,931 - PFLU_RS18415 0.57 +2.8
4,175,931 - PFLU_RS18415 0.57 +0.1
4,176,142 + PFLU_RS18415 0.78 +1.4
4,176,142 + PFLU_RS18415 0.78 -0.4
4,176,142 + PFLU_RS18415 0.78 +0.9
4,176,142 + PFLU_RS18415 0.78 +1.2
4,176,142 + PFLU_RS18415 0.78 -1.1
4,176,143 - PFLU_RS18415 0.79 +0.3
4,176,143 - PFLU_RS18415 0.79 -0.1
4,176,143 - PFLU_RS18415 0.79 +1.2
4,176,143 - PFLU_RS18415 0.79 +1.9
4,176,143 - PFLU_RS18415 0.79 -0.4
4,176,367 + +1.6
4,176,367 + -0.6
4,176,367 + -0.2
4,176,367 + -1.4
4,176,367 + +0.3
4,176,368 - -1.8
4,176,368 - +0.6
4,176,368 - +0.3
4,176,368 - -2.0
4,176,368 - +2.1
4,176,368 - +0.8
4,176,368 - +2.2
4,176,368 - +1.7
4,176,368 - -0.6
4,176,368 - -0.4
4,176,398 + -0.6
4,176,398 + +0.5
4,176,398 + -0.8
4,176,398 + +0.1
4,176,398 + -3.0
4,176,399 - -0.2
4,176,412 + +1.0
4,176,412 + +1.7
4,176,413 - -0.1
4,176,576 - PFLU_RS18420 0.34 -2.6
4,176,842 + +1.5
4,176,842 + -2.8
4,176,842 + -1.9
4,176,950 + PFLU_RS18425 0.21 -1.0
4,176,950 + PFLU_RS18425 0.21 +0.2
4,176,950 + PFLU_RS18425 0.21 -1.8
4,176,950 + PFLU_RS18425 0.21 -0.0
4,176,950 + PFLU_RS18425 0.21 -1.3
4,176,950 + PFLU_RS18425 0.21 -3.4
4,176,950 + PFLU_RS18425 0.21 +3.0
4,176,950 + PFLU_RS18425 0.21 -2.5
4,176,950 + PFLU_RS18425 0.21 -1.4
4,176,951 - PFLU_RS18425 0.22 +2.5
4,176,951 - PFLU_RS18425 0.22 +0.2
4,176,951 - PFLU_RS18425 0.22 -1.2
4,176,951 - PFLU_RS18425 0.22 -1.6
4,176,951 - PFLU_RS18425 0.22 -1.0
4,177,067 + PFLU_RS18425 0.50 -2.3
4,177,280 - +1.8
4,177,280 - +0.4
4,177,280 - -0.3
4,177,280 - -4.0
4,177,280 - +0.6
4,177,280 - +1.4
4,177,280 - +0.6
4,177,296 + +4.0
4,177,296 + +0.1
4,177,296 + +0.8
4,177,297 - +1.2
4,177,297 - -2.0
4,177,297 - +0.0
4,177,297 - +0.6
4,177,441 + PFLU_RS18430 0.20 +2.0
4,177,441 + PFLU_RS18430 0.20 +0.3
4,177,441 + PFLU_RS18430 0.20 +0.9
4,177,441 + PFLU_RS18430 0.20 +2.7
4,177,441 + PFLU_RS18430 0.20 +0.2
4,177,441 + PFLU_RS18430 0.20 -2.5
4,177,441 + PFLU_RS18430 0.20 -0.0
4,177,441 + PFLU_RS18430 0.20 +0.7
4,177,442 - PFLU_RS18430 0.21 +0.5
4,177,442 - PFLU_RS18430 0.21 -0.6
4,177,442 - PFLU_RS18430 0.21 +2.9
4,177,442 - PFLU_RS18430 0.21 -1.4
4,177,442 - PFLU_RS18430 0.21 +0.7
4,177,442 - PFLU_RS18430 0.21 +1.0
4,177,669 + PFLU_RS18430 0.70 -2.5
4,177,670 - PFLU_RS18430 0.70 -0.1
4,177,670 - PFLU_RS18430 0.70 +2.3
4,177,670 - PFLU_RS18430 0.70 +0.2
4,177,813 + -2.2
4,177,847 + +0.2
4,177,848 - -3.1
4,177,848 - -2.3
4,177,848 - +1.3
4,177,857 + -2.2
4,177,857 + -0.4
4,177,857 + +0.5
4,177,858 - -3.2
4,177,865 - +1.3

Or see this region's nucleotide sequence