Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS18345

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS30905 and PFLU_RS18345 are separated by 261 nucleotidesPFLU_RS18345 and PFLU_RS18350 are separated by 40 nucleotidesPFLU_RS18350 and PFLU_RS18355 are separated by 293 nucleotidesPFLU_RS18355 and PFLU_RS18360 are separated by 152 nucleotides PFLU_RS30905: PFLU_RS30905 - hypothetical protein, at 4,161,812 to 4,162,261 _RS30905 PFLU_RS18345: PFLU_RS18345 - hypothetical protein, at 4,162,523 to 4,163,146 _RS18345 PFLU_RS18350: PFLU_RS18350 - GIY-YIG nuclease family protein, at 4,163,187 to 4,163,321 _RS18350 PFLU_RS18355: PFLU_RS18355 - tRNA-Ser, at 4,163,615 to 4,163,705 _RS18355 PFLU_RS18360: PFLU_RS18360 - Bax inhibitor-1/YccA family protein, at 4,163,858 to 4,164,529 _RS18360 Position (kb) 4162 4163 4164Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4161.540 kb on + strandat 4161.637 kb on + strandat 4161.637 kb on + strandat 4161.690 kb on - strandat 4161.691 kb on + strandat 4161.691 kb on + strandat 4161.691 kb on + strandat 4161.691 kb on + strandat 4161.692 kb on - strandat 4161.727 kb on + strandat 4161.728 kb on - strandat 4161.734 kb on + strandat 4161.770 kb on + strandat 4161.770 kb on + strandat 4161.809 kb on - strandat 4161.810 kb on + strandat 4161.873 kb on + strand, within PFLU_RS30905at 4161.883 kb on + strand, within PFLU_RS30905at 4161.884 kb on - strand, within PFLU_RS30905at 4161.937 kb on + strand, within PFLU_RS30905at 4161.956 kb on + strand, within PFLU_RS30905at 4161.984 kb on + strand, within PFLU_RS30905at 4161.985 kb on - strand, within PFLU_RS30905at 4162.078 kb on + strand, within PFLU_RS30905at 4162.088 kb on - strand, within PFLU_RS30905at 4162.136 kb on - strand, within PFLU_RS30905at 4162.186 kb on + strand, within PFLU_RS30905at 4162.231 kb on + strandat 4162.235 kb on + strandat 4162.235 kb on + strandat 4162.235 kb on + strandat 4162.274 kb on - strandat 4162.294 kb on + strandat 4162.487 kb on + strandat 4162.488 kb on - strandat 4162.494 kb on + strandat 4162.495 kb on - strandat 4162.499 kb on - strandat 4162.574 kb on + strandat 4162.610 kb on - strand, within PFLU_RS18345at 4162.610 kb on - strand, within PFLU_RS18345at 4162.660 kb on - strand, within PFLU_RS18345at 4162.753 kb on - strand, within PFLU_RS18345at 4162.759 kb on + strand, within PFLU_RS18345at 4162.785 kb on - strand, within PFLU_RS18345at 4162.822 kb on + strand, within PFLU_RS18345at 4162.822 kb on + strand, within PFLU_RS18345at 4162.856 kb on + strand, within PFLU_RS18345at 4162.864 kb on + strand, within PFLU_RS18345at 4162.865 kb on - strand, within PFLU_RS18345at 4162.950 kb on - strand, within PFLU_RS18345at 4162.973 kb on - strand, within PFLU_RS18345at 4162.973 kb on - strand, within PFLU_RS18345at 4162.974 kb on + strand, within PFLU_RS18345at 4162.974 kb on + strand, within PFLU_RS18345at 4162.974 kb on + strand, within PFLU_RS18345at 4162.975 kb on - strand, within PFLU_RS18345at 4162.999 kb on - strand, within PFLU_RS18345at 4163.053 kb on + strand, within PFLU_RS18345at 4163.054 kb on - strand, within PFLU_RS18345at 4163.116 kb on - strandat 4163.211 kb on - strand, within PFLU_RS18350at 4163.307 kb on + strand, within PFLU_RS18350at 4163.308 kb on - strandat 4163.308 kb on - strandat 4163.499 kb on + strandat 4163.499 kb on + strandat 4163.499 kb on + strandat 4163.500 kb on - strandat 4163.526 kb on + strandat 4163.526 kb on + strandat 4163.526 kb on + strandat 4163.527 kb on - strandat 4163.527 kb on - strandat 4163.527 kb on - strandat 4163.527 kb on - strandat 4163.527 kb on - strandat 4163.527 kb on - strandat 4163.543 kb on + strandat 4163.543 kb on + strandat 4163.543 kb on + strandat 4163.543 kb on + strandat 4163.543 kb on + strandat 4163.544 kb on - strandat 4163.544 kb on - strandat 4163.544 kb on - strandat 4163.544 kb on - strandat 4163.608 kb on - strandat 4163.723 kb on - strandat 4163.725 kb on - strandat 4163.725 kb on - strandat 4163.725 kb on - strandat 4163.725 kb on - strandat 4163.728 kb on - strandat 4163.799 kb on + strandat 4163.813 kb on + strandat 4163.873 kb on + strandat 4163.873 kb on + strandat 4163.873 kb on + strandat 4163.874 kb on - strandat 4163.874 kb on - strandat 4163.936 kb on + strand, within PFLU_RS18360at 4163.936 kb on + strand, within PFLU_RS18360at 4163.936 kb on + strand, within PFLU_RS18360at 4163.936 kb on + strand, within PFLU_RS18360at 4163.936 kb on + strand, within PFLU_RS18360at 4163.936 kb on + strand, within PFLU_RS18360at 4163.936 kb on + strand, within PFLU_RS18360at 4163.936 kb on + strand, within PFLU_RS18360at 4163.936 kb on + strand, within PFLU_RS18360at 4163.936 kb on + strand, within PFLU_RS18360at 4163.936 kb on + strand, within PFLU_RS18360at 4163.936 kb on + strand, within PFLU_RS18360at 4163.937 kb on - strand, within PFLU_RS18360at 4163.937 kb on - strand, within PFLU_RS18360at 4163.937 kb on - strand, within PFLU_RS18360at 4163.937 kb on - strand, within PFLU_RS18360at 4164.016 kb on + strand, within PFLU_RS18360at 4164.016 kb on + strand, within PFLU_RS18360at 4164.017 kb on - strand, within PFLU_RS18360at 4164.017 kb on - strand, within PFLU_RS18360at 4164.041 kb on + strand, within PFLU_RS18360at 4164.041 kb on + strand, within PFLU_RS18360at 4164.041 kb on + strand, within PFLU_RS18360at 4164.041 kb on + strand, within PFLU_RS18360at 4164.041 kb on + strand, within PFLU_RS18360at 4164.041 kb on + strand, within PFLU_RS18360at 4164.041 kb on + strand, within PFLU_RS18360at 4164.041 kb on + strand, within PFLU_RS18360at 4164.041 kb on + strand, within PFLU_RS18360at 4164.041 kb on + strand, within PFLU_RS18360at 4164.041 kb on + strand, within PFLU_RS18360at 4164.041 kb on + strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.042 kb on - strand, within PFLU_RS18360at 4164.128 kb on - strand, within PFLU_RS18360

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,161,540 + -1.4
4,161,637 + +1.1
4,161,637 + +0.1
4,161,690 - -1.2
4,161,691 + -2.9
4,161,691 + +0.2
4,161,691 + -0.9
4,161,691 + -0.5
4,161,692 - -1.0
4,161,727 + -0.2
4,161,728 - -2.9
4,161,734 + +1.2
4,161,770 + +2.5
4,161,770 + +0.8
4,161,809 - -1.6
4,161,810 + -1.2
4,161,873 + PFLU_RS30905 0.14 +0.6
4,161,883 + PFLU_RS30905 0.16 -0.4
4,161,884 - PFLU_RS30905 0.16 +0.3
4,161,937 + PFLU_RS30905 0.28 +0.9
4,161,956 + PFLU_RS30905 0.32 -2.6
4,161,984 + PFLU_RS30905 0.38 -1.3
4,161,985 - PFLU_RS30905 0.38 +1.2
4,162,078 + PFLU_RS30905 0.59 -1.4
4,162,088 - PFLU_RS30905 0.61 +0.3
4,162,136 - PFLU_RS30905 0.72 +1.3
4,162,186 + PFLU_RS30905 0.83 -2.2
4,162,231 + +2.1
4,162,235 + -2.9
4,162,235 + +0.8
4,162,235 + +0.2
4,162,274 - -0.5
4,162,294 + +0.9
4,162,487 + -0.0
4,162,488 - -0.5
4,162,494 + +2.6
4,162,495 - +0.1
4,162,499 - +1.3
4,162,574 + -1.5
4,162,610 - PFLU_RS18345 0.14 +0.7
4,162,610 - PFLU_RS18345 0.14 -1.4
4,162,660 - PFLU_RS18345 0.22 +0.1
4,162,753 - PFLU_RS18345 0.37 +1.2
4,162,759 + PFLU_RS18345 0.38 +0.6
4,162,785 - PFLU_RS18345 0.42 +1.1
4,162,822 + PFLU_RS18345 0.48 -0.8
4,162,822 + PFLU_RS18345 0.48 -0.5
4,162,856 + PFLU_RS18345 0.53 -1.8
4,162,864 + PFLU_RS18345 0.55 +0.7
4,162,865 - PFLU_RS18345 0.55 -2.0
4,162,950 - PFLU_RS18345 0.68 +1.7
4,162,973 - PFLU_RS18345 0.72 -2.4
4,162,973 - PFLU_RS18345 0.72 +1.3
4,162,974 + PFLU_RS18345 0.72 -1.8
4,162,974 + PFLU_RS18345 0.72 +0.7
4,162,974 + PFLU_RS18345 0.72 -1.6
4,162,975 - PFLU_RS18345 0.72 -0.8
4,162,999 - PFLU_RS18345 0.76 -0.5
4,163,053 + PFLU_RS18345 0.85 +0.6
4,163,054 - PFLU_RS18345 0.85 -0.6
4,163,116 - +3.9
4,163,211 - PFLU_RS18350 0.18 +0.8
4,163,307 + PFLU_RS18350 0.89 -1.6
4,163,308 - +2.7
4,163,308 - +1.5
4,163,499 + -2.3
4,163,499 + +1.0
4,163,499 + -0.0
4,163,500 - -0.9
4,163,526 + +0.9
4,163,526 + +0.1
4,163,526 + +0.8
4,163,527 - -2.2
4,163,527 - +2.5
4,163,527 - +2.4
4,163,527 - +0.3
4,163,527 - -0.3
4,163,527 - -0.3
4,163,543 + +1.4
4,163,543 + +1.7
4,163,543 + +0.6
4,163,543 + -1.2
4,163,543 + -0.4
4,163,544 - -1.2
4,163,544 - +0.9
4,163,544 - -1.8
4,163,544 - +2.7
4,163,608 - +2.2
4,163,723 - +3.2
4,163,725 - +1.9
4,163,725 - +0.8
4,163,725 - -1.6
4,163,725 - +3.8
4,163,728 - +3.3
4,163,799 + +0.4
4,163,813 + +0.9
4,163,873 + +1.2
4,163,873 + +2.4
4,163,873 + +0.1
4,163,874 - -2.3
4,163,874 - +1.4
4,163,936 + PFLU_RS18360 0.12 +0.6
4,163,936 + PFLU_RS18360 0.12 +0.3
4,163,936 + PFLU_RS18360 0.12 +2.9
4,163,936 + PFLU_RS18360 0.12 +1.4
4,163,936 + PFLU_RS18360 0.12 +0.3
4,163,936 + PFLU_RS18360 0.12 +1.1
4,163,936 + PFLU_RS18360 0.12 +1.0
4,163,936 + PFLU_RS18360 0.12 +1.0
4,163,936 + PFLU_RS18360 0.12 -1.5
4,163,936 + PFLU_RS18360 0.12 -2.7
4,163,936 + PFLU_RS18360 0.12 +0.6
4,163,936 + PFLU_RS18360 0.12 +0.4
4,163,937 - PFLU_RS18360 0.12 +2.2
4,163,937 - PFLU_RS18360 0.12 +0.7
4,163,937 - PFLU_RS18360 0.12 +1.1
4,163,937 - PFLU_RS18360 0.12 +0.2
4,164,016 + PFLU_RS18360 0.24 -1.3
4,164,016 + PFLU_RS18360 0.24 +1.7
4,164,017 - PFLU_RS18360 0.24 +0.9
4,164,017 - PFLU_RS18360 0.24 -0.2
4,164,041 + PFLU_RS18360 0.27 +2.0
4,164,041 + PFLU_RS18360 0.27 +1.1
4,164,041 + PFLU_RS18360 0.27 -1.9
4,164,041 + PFLU_RS18360 0.27 -0.9
4,164,041 + PFLU_RS18360 0.27 +0.6
4,164,041 + PFLU_RS18360 0.27 +0.1
4,164,041 + PFLU_RS18360 0.27 -2.5
4,164,041 + PFLU_RS18360 0.27 -2.7
4,164,041 + PFLU_RS18360 0.27 -0.3
4,164,041 + PFLU_RS18360 0.27 -0.9
4,164,041 + PFLU_RS18360 0.27 -0.0
4,164,041 + PFLU_RS18360 0.27 -0.5
4,164,042 - PFLU_RS18360 0.27 +0.1
4,164,042 - PFLU_RS18360 0.27 +1.3
4,164,042 - PFLU_RS18360 0.27 -0.9
4,164,042 - PFLU_RS18360 0.27 +1.0
4,164,042 - PFLU_RS18360 0.27 -3.4
4,164,042 - PFLU_RS18360 0.27 +1.4
4,164,042 - PFLU_RS18360 0.27 +1.2
4,164,042 - PFLU_RS18360 0.27 -0.2
4,164,042 - PFLU_RS18360 0.27 -1.5
4,164,042 - PFLU_RS18360 0.27 -0.2
4,164,042 - PFLU_RS18360 0.27 -0.9
4,164,042 - PFLU_RS18360 0.27 +0.4
4,164,042 - PFLU_RS18360 0.27 +0.2
4,164,042 - PFLU_RS18360 0.27 +1.0
4,164,128 - PFLU_RS18360 0.40 +1.4

Or see this region's nucleotide sequence