Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13010

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
2,939,199	+		PFLU_RS13005	0.78	+1.0
2,939,199	+		PFLU_RS13005	0.78	+0.0
2,939,199	+		PFLU_RS13005	0.78	+0.9
2,939,200	-		PFLU_RS13005	0.78	-0.1
2,939,200	-		PFLU_RS13005	0.78	+0.7
2,939,200	-		PFLU_RS13005	0.78	+2.0
2,939,230	+		PFLU_RS13005	0.80	-0.6
2,939,230	+		PFLU_RS13005	0.80	+0.6
2,939,231	-		PFLU_RS13005	0.80	+1.1
2,939,355	+		PFLU_RS13005	0.85	+0.4
2,939,355	+		PFLU_RS13005	0.85	+1.0
2,939,356	-		PFLU_RS13005	0.85	-1.0
2,939,356	-		PFLU_RS13005	0.85	+0.4
2,939,384	+		PFLU_RS13005	0.86	-0.4
2,939,384	+		PFLU_RS13005	0.86	+0.7
2,939,385	-		PFLU_RS13005	0.86	-0.6
2,939,589	-				-0.8
2,939,589	-				+0.6
2,939,611	-				-1.3
2,939,631	+				+0.6
2,939,632	-				+1.4
2,939,632	-				-1.3
2,939,683	-				+0.9
2,939,713	-				-2.0
2,939,767	+				+0.7
2,939,791	+				-1.6
2,939,893	+				-0.8
2,939,893	+				-1.6
2,939,893	+				-1.0
2,939,893	+				+0.6
2,939,893	+				-1.8
2,939,893	+				-0.1
2,939,893	+				-0.7
2,939,893	+				-0.1
2,939,893	+				-2.0
2,939,893	+				-0.7
2,939,893	+				-1.3
2,939,893	+				-2.1
2,939,893	+				-1.6
2,939,893	+				-1.1
2,939,893	+				+1.1
2,939,893	+				-3.1
2,939,893	+				+0.1
2,939,894	-				+0.4
2,939,894	-				-1.8
2,939,894	-				+2.1
2,939,894	-				-0.9
2,939,894	-				-0.4
2,939,894	-				-1.3
2,939,894	-				-0.3
2,939,894	-				+0.9
2,939,894	-				-0.9
2,939,894	-				-0.6
2,939,896	-				-1.8
2,939,896	-				-2.6
2,939,896	-				+0.8
2,939,896	-				+1.4
2,939,896	-				+2.3
2,939,896	-				+1.3
2,939,896	-				+0.0
2,939,896	-				-2.9
2,939,896	-				+0.3
2,939,896	-				-3.3
2,939,896	-				-0.5
2,939,896	-				-0.6
2,939,896	-				+2.0
2,939,896	-				-0.4
2,939,896	-				-0.8
2,939,896	-				+3.5
2,939,896	-				-1.0
2,939,896	-				-0.8
2,939,896	-				-1.6
2,939,896	-				+1.3
2,939,896	-				-1.8
2,939,896	-				+1.0
2,939,896	-				-1.6
2,939,896	-				-1.4
2,939,896	-				+1.1
2,939,896	-				-0.1
2,939,896	-				-0.0
2,939,896	-				+0.3
2,939,896	-				-0.4
2,939,896	-				+1.0
2,939,896	-				+0.1
2,939,896	-				-3.1
2,939,896	-				+0.6
2,939,896	-				-1.6
2,939,896	-				-0.9
2,939,896	-				-1.4
2,939,896	-				+0.9
2,939,965	+				-1.8
2,939,965	+				-3.2
2,939,965	+				+0.1
2,939,965	+				-1.0
2,939,965	+				-0.4
2,939,969	+				+1.0
2,940,010	+				-2.4
2,940,011	-				+0.4
2,940,011	-				-2.9
2,940,011	-				+0.3
2,940,011	-				-3.4
2,940,017	+				-1.9
2,940,018	-				+1.2
2,940,069	+				-2.6
2,940,070	-				-0.0
2,940,080	+				+0.1
2,940,091	-				-1.0
2,940,157	+				-2.6
2,940,236	-		PFLU_RS13010	0.20	-2.0
2,940,256	+		PFLU_RS13010	0.23	-2.6
2,940,256	+		PFLU_RS13010	0.23	-1.0
2,940,320	-		PFLU_RS13010	0.34	-1.6
2,940,320	-		PFLU_RS13010	0.34	-2.8
2,940,320	-		PFLU_RS13010	0.34	-1.8
2,940,367	+		PFLU_RS13010	0.42	+0.6
2,940,382	-		PFLU_RS13010	0.45	-2.3
2,940,466	+		PFLU_RS13010	0.59	-1.6
2,940,466	+		PFLU_RS13010	0.59	+0.2
2,940,466	+		PFLU_RS13010	0.59	-2.7
2,940,466	+		PFLU_RS13010	0.59	-0.3
2,940,466	+		PFLU_RS13010	0.59	-1.0
2,940,466	+		PFLU_RS13010	0.59	-1.6
2,940,467	-		PFLU_RS13010	0.59	-1.8
2,940,467	-		PFLU_RS13010	0.59	-2.9
2,940,467	-		PFLU_RS13010	0.59	-2.0
2,940,467	-		PFLU_RS13010	0.59	-0.9
2,940,467	-		PFLU_RS13010	0.59	-1.8
2,940,467	-		PFLU_RS13010	0.59	-3.2
2,940,467	-		PFLU_RS13010	0.59	+0.0
2,940,467	-		PFLU_RS13010	0.59	-2.7
2,940,469	+		PFLU_RS13010	0.59	-2.7
2,940,469	+		PFLU_RS13010	0.59	-2.4
2,940,469	+		PFLU_RS13010	0.59	-1.6
2,940,469	+		PFLU_RS13010	0.59	-1.6
2,940,470	-		PFLU_RS13010	0.60	-2.4
2,940,470	-		PFLU_RS13010	0.60	+1.0
2,940,470	-		PFLU_RS13010	0.60	+1.0
2,940,640	-		PFLU_RS13010	0.89	-1.3
2,940,697	+				-0.4
2,940,700	+				+1.0
2,940,700	+				-0.9
2,940,700	+				-0.4
2,940,701	-				+0.7
2,940,701	-				-1.3
2,940,707	+				+0.1
2,940,819	-				-1.3
2,941,105	+		PFLU_RS13015	0.28	-1.8
2,941,105	+		PFLU_RS13015	0.28	-0.2
2,941,105	+		PFLU_RS13015	0.28	-3.4
2,941,105	+		PFLU_RS13015	0.28	-0.1
2,941,106	-		PFLU_RS13015	0.28	-2.7
2,941,106	-		PFLU_RS13015	0.28	-4.2
2,941,106	-		PFLU_RS13015	0.28	+1.2
2,941,106	-		PFLU_RS13015	0.28	-1.0
2,941,384	+		PFLU_RS13015	0.66	+0.1
2,941,384	+		PFLU_RS13015	0.66	+1.3
2,941,384	+		PFLU_RS13015	0.66	-2.1
2,941,386	-		PFLU_RS13015	0.66	-2.5
2,941,531	-		PFLU_RS13015	0.85	+1.0
2,941,546	+		PFLU_RS13015	0.87	-0.4
2,941,546	+		PFLU_RS13015	0.87	-1.6
2,941,546	+		PFLU_RS13015	0.87	-3.1
2,941,546	+		PFLU_RS13015	0.87	-2.8
2,941,546	+		PFLU_RS13015	0.87	-2.6
2,941,546	+		PFLU_RS13015	0.87	-2.6
2,941,547	-		PFLU_RS13015	0.87	+0.0
2,941,547	-		PFLU_RS13015	0.87	-3.0
2,941,547	-		PFLU_RS13015	0.87	-3.4
2,941,547	-		PFLU_RS13015	0.87	-2.6
2,941,547	-		PFLU_RS13015	0.87	-0.6
2,941,547	-		PFLU_RS13015	0.87	-1.1
2,941,547	-		PFLU_RS13015	0.87	-0.7
2,941,630	+				+0.1
2,941,630	+				-0.6
2,941,631	-				+0.1
2,941,674	+				+1.6
2,941,674	+				+0.9
2,941,674	+				+0.4
2,941,674	+				-0.4
2,941,675	-				-0.4
2,941,675	-				+0.6
2,941,675	-				+0.2
2,941,676	-				+0.1