Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS12980

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
2,927,643	-				+1.2
2,927,695	-		PFLU_RS12970	0.14	+1.2
2,927,810	+		PFLU_RS12970	0.42	-1.1
2,927,810	+		PFLU_RS12970	0.42	-2.5
2,927,811	-		PFLU_RS12970	0.42	-0.2
2,928,037	+				-0.8
2,928,037	+				-0.7
2,928,038	-				-2.3
2,928,048	+				+0.4
2,928,048	+				-1.3
2,928,048	+				-2.8
2,928,048	+				-0.2
2,928,049	-				-1.1
2,928,049	-				+1.7
2,928,049	-				-2.0
2,928,049	-				+0.0
2,928,049	-				+0.8
2,928,049	-				-0.2
2,928,049	-				+0.3
2,928,049	-				-1.8
2,928,049	-				-0.9
2,928,202	+				-2.8
2,928,202	+				-1.5
2,928,202	+				-3.7
2,928,202	+				-3.1
2,928,202	+				-2.4
2,928,203	-				+0.0
2,928,203	-				-3.7
2,928,203	-				-3.9
2,928,242	-		PFLU_RS12975	0.17	-2.5
2,928,295	+		PFLU_RS12975	0.28	-2.8
2,928,296	-		PFLU_RS12975	0.28	-1.8
2,928,296	-		PFLU_RS12975	0.28	-1.8
2,928,296	-		PFLU_RS12975	0.28	-2.3
2,928,296	-		PFLU_RS12975	0.28	-2.0
2,928,382	+		PFLU_RS12975	0.46	-3.3
2,928,382	+		PFLU_RS12975	0.46	-1.0
2,928,383	-		PFLU_RS12975	0.46	-2.8
2,928,383	-		PFLU_RS12975	0.46	-2.5
2,928,386	+		PFLU_RS12975	0.46	-3.3
2,928,387	-		PFLU_RS12975	0.47	-3.0
2,928,387	-		PFLU_RS12975	0.47	-3.2
2,928,387	-		PFLU_RS12975	0.47	-2.8
2,928,636	-				-1.3
2,928,650	+				-2.5
2,928,650	+				-3.1
2,928,689	+				-1.8
2,928,689	+				-2.5
2,928,689	+				-2.5
2,928,689	+				-4.1
2,928,690	-				-3.2
2,928,731	+				-2.1
2,928,731	+				-3.0
2,928,731	+				-1.8
2,928,731	+				-1.9
2,928,731	+				-2.5
2,928,731	+				-1.8
2,928,731	+				+2.6
2,928,731	+				-2.3
2,928,731	+				-3.5
2,928,732	-				-2.1
2,928,732	-				-2.5
2,928,732	-				-3.6
2,928,845	+		PFLU_RS12980	0.13	-0.5
2,928,845	+		PFLU_RS12980	0.13	-1.8
2,928,846	-		PFLU_RS12980	0.13	-2.1
2,928,962	+		PFLU_RS12980	0.20	+0.0
2,928,963	-		PFLU_RS12980	0.20	+1.3
2,929,400	+		PFLU_RS12980	0.46	-2.1
2,929,401	-		PFLU_RS12980	0.46	+0.0
2,929,528	+		PFLU_RS12980	0.54	-1.6
2,929,528	+		PFLU_RS12980	0.54	-1.7
2,929,553	+		PFLU_RS12980	0.55	-2.0
2,929,553	+		PFLU_RS12980	0.55	-1.8
2,929,553	+		PFLU_RS12980	0.55	-3.1
2,929,553	+		PFLU_RS12980	0.55	-2.0
2,929,553	+		PFLU_RS12980	0.55	-1.0
2,929,553	+		PFLU_RS12980	0.55	-2.6
2,929,553	+		PFLU_RS12980	0.55	-1.6
2,929,554	-		PFLU_RS12980	0.55	-1.6
2,929,583	+		PFLU_RS12980	0.57	-0.7
2,929,584	-		PFLU_RS12980	0.57	-1.6
2,929,584	-		PFLU_RS12980	0.57	-3.0
2,929,607	+		PFLU_RS12980	0.59	-1.3
2,929,608	-		PFLU_RS12980	0.59	-2.6
2,929,691	-		PFLU_RS12980	0.64	-2.4
2,930,020	+		PFLU_RS12980	0.84	-3.8
2,930,020	+		PFLU_RS12980	0.84	-2.4
2,930,020	+		PFLU_RS12980	0.84	+0.0
2,930,020	+		PFLU_RS12980	0.84	-2.1
2,930,020	+		PFLU_RS12980	0.84	-1.3
2,930,021	-		PFLU_RS12980	0.84	-3.7
2,930,021	-		PFLU_RS12980	0.84	+0.0
2,930,021	-		PFLU_RS12980	0.84	-2.9
2,930,021	-		PFLU_RS12980	0.84	-1.6
2,930,021	-		PFLU_RS12980	0.84	-2.9
2,930,021	-		PFLU_RS12980	0.84	-0.2
2,930,021	-		PFLU_RS12980	0.84	-3.1
2,930,021	-		PFLU_RS12980	0.84	-1.3
2,930,114	+		PFLU_RS12980	0.89	-1.8
2,930,115	-		PFLU_RS12980	0.89	-2.1
2,930,115	-		PFLU_RS12980	0.89	-1.1
2,930,157	-				-1.6
2,930,157	-				+1.0
2,930,157	-				-2.7
2,930,212	+				-2.1
2,930,213	-				-1.8
2,930,213	-				-1.8
2,930,216	+				-3.0
2,930,216	+				-1.0
2,930,216	+				-3.3
2,930,217	-				-3.4
2,930,282	+				-1.8
2,930,283	-				-3.2
2,930,283	-				-2.1
2,930,283	-				-0.6
2,930,284	+				-3.5
2,930,284	+				-2.3
2,930,284	+				-1.3
2,930,284	+				-2.9
2,930,284	+				-3.5
2,930,284	+				-3.3
2,930,284	+				-2.4
2,930,285	-				-0.3
2,930,285	-				-2.7
2,930,285	-				-3.5
2,930,285	-				-3.1
2,930,285	-				-2.6
2,930,285	-				-1.0
2,930,285	-				-2.1
2,930,285	-				-1.8
2,930,288	+				-2.2
2,930,288	+				-3.6
2,930,288	+				+0.5
2,930,288	+				-4.0
2,930,288	+				-0.5
2,930,288	+				-0.6
2,930,288	+				-2.7
2,930,288	+				-2.6
2,930,288	+				-2.8
2,930,288	+				-1.6
2,930,288	+				+0.0
2,930,288	+				-2.0
2,930,288	+				-2.7
2,930,288	+				-2.7
2,930,288	+				-2.1
2,930,288	+				-2.3
2,930,288	+				-0.3
2,930,288	+				-1.6
2,930,288	+				-2.3
2,930,288	+				-2.3
2,930,288	+				-3.5
2,930,288	+				-1.3
2,930,288	+				-1.0
2,930,288	+				-2.6
2,930,288	+				-3.2
2,930,288	+				-1.6
2,930,288	+				-3.4
2,930,289	-				-2.8
2,930,289	-				-3.1
2,930,289	-				-3.3
2,930,289	-				+0.0
2,930,289	-				+1.2
2,930,289	-				-3.8
2,930,289	-				-1.0
2,930,289	-				-3.0
2,930,289	-				-2.3
2,930,289	-				-1.3
2,930,289	-				-2.6
2,930,289	-				-3.1
2,930,289	-				-3.4
2,930,289	-				-2.7
2,930,289	-				+0.2
2,930,289	-				-2.9
2,930,289	-				-1.0
2,930,289	-				-3.1
2,930,289	-				-2.7
2,930,289	-				-2.7
2,930,289	-				-0.6
2,930,289	-				-2.3
2,930,289	-				-1.1
2,930,289	-				-2.9
2,930,289	-				-3.1
2,930,289	-				+0.0
2,930,289	-				-1.3
2,930,289	-				-2.1
2,930,289	-				-2.8
2,930,289	-				-2.8
2,930,289	-				-2.0
2,930,289	-				-3.1
2,930,289	-				-1.0
2,930,289	-				-1.3
2,930,289	-				-2.1
2,930,289	-				-1.6
2,930,289	-				-1.3
2,930,289	-				-2.7
2,930,289	-				-2.1
2,930,289	-				-1.6
2,930,289	-				-1.3
2,930,289	-				-4.1
2,930,292	+				-2.6
2,930,292	+				+0.6
2,930,292	+				-2.3
2,930,292	+				+0.0
2,930,292	+				-2.3
2,930,292	+				-1.3
2,930,292	+				-1.3
2,930,292	+				-1.6
2,930,292	+				-1.3
2,930,292	+				-3.2
2,930,292	+				-3.4
2,930,292	+				-1.7
2,930,292	+				-2.3
2,930,292	+				-2.0
2,930,292	+				-2.2
2,930,293	-				-2.1
2,930,293	-				-1.6
2,930,293	-				-2.7
2,930,293	-				-2.7
2,930,293	-				-1.8
2,930,293	-				-2.6
2,930,293	-				-2.6
2,930,293	-				-2.4
2,930,293	-				-3.1
2,930,293	-				-2.3
2,930,293	-				-0.8
2,930,293	-				-1.8
2,930,293	-				-0.1
2,930,293	-				-2.7
2,930,293	-				-1.3
2,930,293	-				-2.3
2,930,293	-				-3.7
2,930,293	-				-2.0
2,930,293	-				+0.4
2,930,293	-				-2.7
2,930,294	+				-2.3
2,930,294	+				-4.3
2,930,294	+				-2.9
2,930,294	+				-0.5
2,930,294	+				-2.4
2,930,294	+				-1.6
2,930,294	+				-2.4
2,930,294	+				-2.3
2,930,294	+				+0.0
2,930,294	+				-3.3
2,930,294	+				-2.3
2,930,294	+				-0.7
2,930,294	+				-3.4
2,930,294	+				-1.6
2,930,294	+				-1.3
2,930,294	+				-2.1
2,930,294	+				-0.4
2,930,294	+				-1.8
2,930,294	+				-2.4
2,930,294	+				-2.7
2,930,295	-				-4.0
2,930,295	-				-2.1
2,930,295	-				-0.4
2,930,295	-				-4.1
2,930,295	-				+0.0
2,930,295	-				-2.0
2,930,295	-				-3.0
2,930,295	-				-2.9
2,930,295	-				-3.7
2,930,295	-				-2.7
2,930,295	-				-1.0
2,930,295	-				-2.3
2,930,295	-				-2.7
2,930,295	-				-2.7
2,930,295	-				-3.0
2,930,295	-				-1.0
2,930,295	-				-2.0
2,930,295	-				-3.2
2,930,295	-				-2.0
2,930,295	-				-2.3
2,930,295	-				-3.2
2,930,358	-				-2.0
2,930,358	-				-2.3
2,930,394	+				-3.7
2,930,394	+				-3.2
2,930,396	+				-1.2
2,930,430	+				-0.3
2,930,431	-				-0.2
2,930,453	+				+0.5
2,930,472	+				-1.6
2,930,472	+				+0.7
2,930,472	+				+0.6
2,930,472	+				+0.0
2,930,473	-				+0.7
2,930,488	+				+0.7
2,930,488	+				-0.6
2,930,488	+				+0.5
2,930,501	+				-3.1
2,930,501	+				-0.5
2,930,501	+				-3.0
2,930,501	+				+1.3
2,930,501	+				+1.6
2,930,501	+				-0.2
2,930,502	-				-0.8
2,930,502	-				-2.1
2,930,503	+				+1.8
2,930,503	+				+1.4
2,930,503	+				+1.5
2,930,503	+				+1.4
2,930,503	+				-0.6
2,930,503	+				+3.0
2,930,504	-				+0.5
2,930,504	-				+0.5
2,930,637	+				-2.9
2,930,638	-				-1.1
2,930,638	-				-1.2
2,930,638	-				-2.1
2,930,706	+				+0.9
2,930,706	+				-2.0
2,930,720	+				+1.0
2,930,720	+				-0.8
2,930,721	-				-0.6
2,930,721	-				-3.2
2,930,977	+				+0.3
2,930,977	+				+2.2
2,930,977	+				+1.0
2,930,977	+				+0.9
2,930,977	+				+0.4
2,930,977	+				-0.8
2,930,977	+				+0.8
2,930,978	-				+0.3
2,930,978	-				-0.6
2,931,033	+				+1.5
2,931,033	+				+0.4
2,931,033	+				-0.1
2,931,033	+				-0.6
2,931,033	+				+1.3
2,931,033	+				+0.3
2,931,033	+				-1.3
2,931,033	+				-1.3
2,931,034	-				+0.2
2,931,034	-				-1.3
2,931,034	-				+0.4
2,931,034	-				+0.7
2,931,034	-				+1.4
2,931,034	-				-2.3
2,931,034	-				-0.3
2,931,034	-				-0.7
2,931,034	-				+0.8
2,931,034	-				-0.0