Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05855

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS05850 and PFLU_RS05855 overlap by 1 nucleotidesPFLU_RS05855 and PFLU_RS05860 overlap by 8 nucleotidesPFLU_RS05860 and PFLU_RS05865 are separated by 9 nucleotides PFLU_RS05850: PFLU_RS05850 - hypothetical protein, at 1,313,622 to 1,314,773 _RS05850 PFLU_RS05855: PFLU_RS05855 - phage tail protein, at 1,314,773 to 1,315,156 _RS05855 PFLU_RS05860: PFLU_RS05860 - tail protein, at 1,315,149 to 1,315,361 _RS05860 PFLU_RS05865: PFLU_RS05865 - hypothetical protein, at 1,315,371 to 1,316,381 _RS05865 Position (kb) 1314 1315 1316Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1313.780 kb on + strand, within PFLU_RS05850at 1313.780 kb on + strand, within PFLU_RS05850at 1313.780 kb on + strand, within PFLU_RS05850at 1313.781 kb on - strand, within PFLU_RS05850at 1313.781 kb on - strand, within PFLU_RS05850at 1313.781 kb on - strand, within PFLU_RS05850at 1313.781 kb on - strand, within PFLU_RS05850at 1313.858 kb on + strand, within PFLU_RS05850at 1313.858 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.864 kb on + strand, within PFLU_RS05850at 1313.865 kb on - strand, within PFLU_RS05850at 1313.865 kb on - strand, within PFLU_RS05850at 1313.865 kb on - strand, within PFLU_RS05850at 1313.865 kb on - strand, within PFLU_RS05850at 1313.865 kb on - strand, within PFLU_RS05850at 1313.865 kb on - strand, within PFLU_RS05850at 1314.106 kb on + strand, within PFLU_RS05850at 1314.106 kb on + strand, within PFLU_RS05850at 1314.107 kb on - strand, within PFLU_RS05850at 1314.107 kb on - strand, within PFLU_RS05850at 1314.107 kb on - strand, within PFLU_RS05850at 1314.107 kb on - strand, within PFLU_RS05850at 1314.110 kb on + strand, within PFLU_RS05850at 1314.110 kb on + strand, within PFLU_RS05850at 1314.110 kb on + strand, within PFLU_RS05850at 1314.110 kb on + strand, within PFLU_RS05850at 1314.110 kb on + strand, within PFLU_RS05850at 1314.110 kb on + strand, within PFLU_RS05850at 1314.110 kb on + strand, within PFLU_RS05850at 1314.110 kb on + strand, within PFLU_RS05850at 1314.111 kb on - strand, within PFLU_RS05850at 1314.111 kb on - strand, within PFLU_RS05850at 1314.111 kb on - strand, within PFLU_RS05850at 1314.627 kb on - strand, within PFLU_RS05850at 1314.790 kb on - strandat 1314.802 kb on + strandat 1314.889 kb on + strand, within PFLU_RS05855at 1314.889 kb on + strand, within PFLU_RS05855at 1314.931 kb on + strand, within PFLU_RS05855at 1314.932 kb on - strand, within PFLU_RS05855at 1314.953 kb on + strand, within PFLU_RS05855at 1314.953 kb on + strand, within PFLU_RS05855at 1314.953 kb on + strand, within PFLU_RS05855at 1314.953 kb on + strand, within PFLU_RS05855at 1314.965 kb on - strand, within PFLU_RS05855at 1315.040 kb on - strand, within PFLU_RS05855at 1315.040 kb on - strand, within PFLU_RS05855at 1315.154 kb on + strandat 1315.155 kb on - strandat 1315.166 kb on + strandat 1315.197 kb on + strand, within PFLU_RS05860at 1315.370 kb on + strandat 1315.370 kb on + strandat 1315.371 kb on - strandat 1315.371 kb on - strandat 1315.471 kb on + strandat 1315.472 kb on - strand, within PFLU_RS05865at 1315.472 kb on - strand, within PFLU_RS05865at 1315.472 kb on - strand, within PFLU_RS05865at 1315.472 kb on - strand, within PFLU_RS05865at 1315.579 kb on + strand, within PFLU_RS05865at 1315.711 kb on - strand, within PFLU_RS05865at 1315.845 kb on - strand, within PFLU_RS05865at 1315.845 kb on - strand, within PFLU_RS05865at 1315.866 kb on + strand, within PFLU_RS05865at 1315.866 kb on + strand, within PFLU_RS05865at 1315.868 kb on + strand, within PFLU_RS05865at 1315.868 kb on + strand, within PFLU_RS05865at 1315.899 kb on + strand, within PFLU_RS05865at 1315.899 kb on + strand, within PFLU_RS05865at 1315.899 kb on + strand, within PFLU_RS05865at 1315.899 kb on + strand, within PFLU_RS05865at 1315.899 kb on + strand, within PFLU_RS05865at 1315.899 kb on + strand, within PFLU_RS05865at 1315.899 kb on + strand, within PFLU_RS05865at 1315.899 kb on + strand, within PFLU_RS05865at 1315.899 kb on + strand, within PFLU_RS05865at 1315.899 kb on + strand, within PFLU_RS05865at 1315.899 kb on + strand, within PFLU_RS05865at 1315.899 kb on + strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1315.900 kb on - strand, within PFLU_RS05865at 1316.040 kb on + strand, within PFLU_RS05865at 1316.040 kb on + strand, within PFLU_RS05865at 1316.041 kb on - strand, within PFLU_RS05865

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,313,780 + PFLU_RS05850 0.14 -2.8
1,313,780 + PFLU_RS05850 0.14 +0.1
1,313,780 + PFLU_RS05850 0.14 +1.7
1,313,781 - PFLU_RS05850 0.14 +1.8
1,313,781 - PFLU_RS05850 0.14 +0.6
1,313,781 - PFLU_RS05850 0.14 -2.0
1,313,781 - PFLU_RS05850 0.14 +0.8
1,313,858 + PFLU_RS05850 0.20 +0.7
1,313,858 + PFLU_RS05850 0.20 +2.3
1,313,864 + PFLU_RS05850 0.21 +0.9
1,313,864 + PFLU_RS05850 0.21 +0.3
1,313,864 + PFLU_RS05850 0.21 +1.7
1,313,864 + PFLU_RS05850 0.21 -1.2
1,313,864 + PFLU_RS05850 0.21 +1.1
1,313,864 + PFLU_RS05850 0.21 +0.8
1,313,864 + PFLU_RS05850 0.21 -0.5
1,313,864 + PFLU_RS05850 0.21 +1.8
1,313,864 + PFLU_RS05850 0.21 -0.7
1,313,864 + PFLU_RS05850 0.21 -1.6
1,313,864 + PFLU_RS05850 0.21 -1.8
1,313,864 + PFLU_RS05850 0.21 +0.6
1,313,864 + PFLU_RS05850 0.21 +0.7
1,313,864 + PFLU_RS05850 0.21 +0.0
1,313,865 - PFLU_RS05850 0.21 +1.7
1,313,865 - PFLU_RS05850 0.21 +1.6
1,313,865 - PFLU_RS05850 0.21 -0.7
1,313,865 - PFLU_RS05850 0.21 +1.0
1,313,865 - PFLU_RS05850 0.21 +0.6
1,313,865 - PFLU_RS05850 0.21 +1.2
1,314,106 + PFLU_RS05850 0.42 -1.6
1,314,106 + PFLU_RS05850 0.42 +0.0
1,314,107 - PFLU_RS05850 0.42 -1.0
1,314,107 - PFLU_RS05850 0.42 -2.6
1,314,107 - PFLU_RS05850 0.42 -1.7
1,314,107 - PFLU_RS05850 0.42 +0.6
1,314,110 + PFLU_RS05850 0.42 -1.0
1,314,110 + PFLU_RS05850 0.42 +0.5
1,314,110 + PFLU_RS05850 0.42 -0.8
1,314,110 + PFLU_RS05850 0.42 -0.1
1,314,110 + PFLU_RS05850 0.42 +1.3
1,314,110 + PFLU_RS05850 0.42 -0.0
1,314,110 + PFLU_RS05850 0.42 +1.4
1,314,110 + PFLU_RS05850 0.42 -0.9
1,314,111 - PFLU_RS05850 0.42 +0.3
1,314,111 - PFLU_RS05850 0.42 -0.5
1,314,111 - PFLU_RS05850 0.42 -2.6
1,314,627 - PFLU_RS05850 0.87 -0.9
1,314,790 - -1.2
1,314,802 + -0.8
1,314,889 + PFLU_RS05855 0.30 -2.5
1,314,889 + PFLU_RS05855 0.30 -1.5
1,314,931 + PFLU_RS05855 0.41 -0.9
1,314,932 - PFLU_RS05855 0.41 -1.9
1,314,953 + PFLU_RS05855 0.47 -1.4
1,314,953 + PFLU_RS05855 0.47 -2.1
1,314,953 + PFLU_RS05855 0.47 -3.4
1,314,953 + PFLU_RS05855 0.47 -3.0
1,314,965 - PFLU_RS05855 0.50 -0.8
1,315,040 - PFLU_RS05855 0.70 +1.0
1,315,040 - PFLU_RS05855 0.70 -2.7
1,315,154 + -1.8
1,315,155 - +1.0
1,315,166 + -1.8
1,315,197 + PFLU_RS05860 0.23 +0.4
1,315,370 + +0.5
1,315,370 + +0.4
1,315,371 - -0.5
1,315,371 - -2.4
1,315,471 + -2.4
1,315,472 - PFLU_RS05865 0.10 +2.8
1,315,472 - PFLU_RS05865 0.10 +2.9
1,315,472 - PFLU_RS05865 0.10 +1.3
1,315,472 - PFLU_RS05865 0.10 -0.3
1,315,579 + PFLU_RS05865 0.21 -2.5
1,315,711 - PFLU_RS05865 0.34 -1.9
1,315,845 - PFLU_RS05865 0.47 +0.2
1,315,845 - PFLU_RS05865 0.47 -0.6
1,315,866 + PFLU_RS05865 0.49 +0.1
1,315,866 + PFLU_RS05865 0.49 -0.3
1,315,868 + PFLU_RS05865 0.49 +1.8
1,315,868 + PFLU_RS05865 0.49 +0.4
1,315,899 + PFLU_RS05865 0.52 +0.3
1,315,899 + PFLU_RS05865 0.52 -1.8
1,315,899 + PFLU_RS05865 0.52 -1.7
1,315,899 + PFLU_RS05865 0.52 +0.5
1,315,899 + PFLU_RS05865 0.52 -3.5
1,315,899 + PFLU_RS05865 0.52 +1.3
1,315,899 + PFLU_RS05865 0.52 -3.2
1,315,899 + PFLU_RS05865 0.52 +1.2
1,315,899 + PFLU_RS05865 0.52 -1.2
1,315,899 + PFLU_RS05865 0.52 +0.5
1,315,899 + PFLU_RS05865 0.52 -0.2
1,315,899 + PFLU_RS05865 0.52 -2.1
1,315,900 - PFLU_RS05865 0.52 +0.4
1,315,900 - PFLU_RS05865 0.52 +1.9
1,315,900 - PFLU_RS05865 0.52 -0.6
1,315,900 - PFLU_RS05865 0.52 +0.6
1,315,900 - PFLU_RS05865 0.52 +0.1
1,315,900 - PFLU_RS05865 0.52 -0.6
1,315,900 - PFLU_RS05865 0.52 -1.1
1,315,900 - PFLU_RS05865 0.52 +1.0
1,315,900 - PFLU_RS05865 0.52 +1.0
1,315,900 - PFLU_RS05865 0.52 -1.8
1,315,900 - PFLU_RS05865 0.52 -0.2
1,315,900 - PFLU_RS05865 0.52 +1.8
1,315,900 - PFLU_RS05865 0.52 -0.6
1,315,900 - PFLU_RS05865 0.52 -2.4
1,315,900 - PFLU_RS05865 0.52 +0.2
1,315,900 - PFLU_RS05865 0.52 -0.6
1,315,900 - PFLU_RS05865 0.52 +1.0
1,315,900 - PFLU_RS05865 0.52 -1.6
1,316,040 + PFLU_RS05865 0.66 -0.7
1,316,040 + PFLU_RS05865 0.66 -1.2
1,316,041 - PFLU_RS05865 0.66 -0.6

Or see this region's nucleotide sequence