Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04930

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
1,104,217	+		PFLU_RS04925	0.54	+1.1
1,104,218	-		PFLU_RS04925	0.54	-0.9
1,104,218	-		PFLU_RS04925	0.54	+0.2
1,104,288	+		PFLU_RS04925	0.61	-1.4
1,104,288	+		PFLU_RS04925	0.61	+0.3
1,104,288	+		PFLU_RS04925	0.61	+0.7
1,104,289	-		PFLU_RS04925	0.61	-0.2
1,104,289	-		PFLU_RS04925	0.61	+0.2
1,104,305	+		PFLU_RS04925	0.62	+0.7
1,104,305	+		PFLU_RS04925	0.62	+1.0
1,104,305	+		PFLU_RS04925	0.62	-1.6
1,104,305	+		PFLU_RS04925	0.62	+0.2
1,104,305	+		PFLU_RS04925	0.62	+2.3
1,104,306	-		PFLU_RS04925	0.62	-2.3
1,104,306	-		PFLU_RS04925	0.62	+2.1
1,104,306	-		PFLU_RS04925	0.62	+1.0
1,104,316	+		PFLU_RS04925	0.63	-0.7
1,104,316	+		PFLU_RS04925	0.63	-1.2
1,104,317	-		PFLU_RS04925	0.63	+0.9
1,104,317	-		PFLU_RS04925	0.63	+1.7
1,104,317	-		PFLU_RS04925	0.63	-1.8
1,104,436	+		PFLU_RS04925	0.74	-1.4
1,104,436	+		PFLU_RS04925	0.74	-0.9
1,104,436	+		PFLU_RS04925	0.74	-1.1
1,104,436	+		PFLU_RS04925	0.74	+0.5
1,104,436	+		PFLU_RS04925	0.74	-2.7
1,104,437	-		PFLU_RS04925	0.74	-0.7
1,104,437	-		PFLU_RS04925	0.74	+0.6
1,104,437	-		PFLU_RS04925	0.74	+0.2
1,104,437	-		PFLU_RS04925	0.74	+1.0
1,104,857	-				-2.4
1,104,907	-				-2.4
1,104,909	+				-1.2
1,104,909	+				-3.1
1,104,909	+				-0.5
1,104,910	-				+1.8
1,104,910	-				-3.1
1,105,033	+				-0.5
1,105,034	-				-1.0
1,105,034	-				-0.2
1,105,069	-				+2.7
1,105,069	-				-1.0
1,105,069	-				-0.8
1,105,086	+				+0.5
1,105,086	+				-1.3
1,105,086	+				-2.0
1,105,086	+				-0.9
1,105,086	+				-2.0
1,105,086	+				-3.1
1,105,087	-				+0.5
1,105,087	-				-2.2
1,105,114	+				-3.6
1,105,114	+				+0.3
1,105,114	+				-0.8
1,105,115	-				-1.2
1,105,115	-				-1.1
1,105,115	-				-1.7
1,105,115	-				-3.9
1,105,115	-				-1.7
1,105,115	-				-2.2
1,105,115	-				-3.1
1,105,126	-				-1.7
1,105,133	+				+1.1
1,105,133	+				-0.0
1,105,133	+				-2.2
1,105,133	+				-1.2
1,105,133	+				-2.8
1,105,133	+				-1.6
1,105,133	+				-2.0
1,105,133	+				-0.2
1,105,133	+				-2.3
1,105,134	-				-3.5
1,105,134	-				-1.6
1,105,134	-				-1.8
1,105,161	+				-1.1
1,105,161	+				+1.6
1,105,161	+				-2.2
1,105,162	-				-2.9
1,105,162	-				-0.6
1,105,162	-				-2.0
1,105,338	+		PFLU_RS04930	0.19	-0.1
1,105,503	+		PFLU_RS04930	0.31	-3.9
1,105,503	+		PFLU_RS04930	0.31	+0.5
1,105,504	-		PFLU_RS04930	0.31	-2.9
1,105,546	+		PFLU_RS04930	0.34	-3.5
1,105,546	+		PFLU_RS04930	0.34	-2.3
1,105,546	+		PFLU_RS04930	0.34	-1.1
1,105,546	+		PFLU_RS04930	0.34	+0.8
1,105,546	+		PFLU_RS04930	0.34	-2.2
1,105,546	+		PFLU_RS04930	0.34	-0.9
1,105,546	+		PFLU_RS04930	0.34	-2.9
1,105,547	-		PFLU_RS04930	0.34	+0.4
1,105,547	-		PFLU_RS04930	0.34	-2.6
1,105,547	-		PFLU_RS04930	0.34	-3.1
1,105,551	+		PFLU_RS04930	0.35	-3.3
1,105,595	-		PFLU_RS04930	0.38	-1.7
1,105,707	+		PFLU_RS04930	0.46	-1.9
1,105,707	+		PFLU_RS04930	0.46	-2.7
1,105,708	-		PFLU_RS04930	0.46	-3.0
1,105,708	-		PFLU_RS04930	0.46	+0.4
1,105,708	-		PFLU_RS04930	0.46	-1.4
1,105,842	+		PFLU_RS04930	0.55	-2.5
1,105,843	-		PFLU_RS04930	0.55	-2.1
1,105,846	+		PFLU_RS04930	0.56	-3.0
1,105,846	+		PFLU_RS04930	0.56	-0.6
1,105,864	+		PFLU_RS04930	0.57	+0.4
1,105,864	+		PFLU_RS04930	0.57	+3.7
1,105,864	+		PFLU_RS04930	0.57	-3.1
1,105,864	+		PFLU_RS04930	0.57	+0.3
1,105,864	+		PFLU_RS04930	0.57	-1.4
1,105,865	-		PFLU_RS04930	0.57	-1.3
1,106,140	+		PFLU_RS04930	0.77	-1.5
1,106,140	+		PFLU_RS04930	0.77	-3.4
1,106,140	+		PFLU_RS04930	0.77	-3.5
1,106,140	+		PFLU_RS04930	0.77	-1.2
1,106,140	+		PFLU_RS04930	0.77	-2.2
1,106,140	+		PFLU_RS04930	0.77	-1.7
1,106,140	+		PFLU_RS04930	0.77	-3.9
1,106,140	+		PFLU_RS04930	0.77	-2.2
1,106,140	+		PFLU_RS04930	0.77	-2.4
1,106,140	+		PFLU_RS04930	0.77	-3.7
1,106,141	-		PFLU_RS04930	0.77	-2.1
1,106,141	-		PFLU_RS04930	0.77	-1.0
1,106,141	-		PFLU_RS04930	0.77	-1.4
1,106,141	-		PFLU_RS04930	0.77	-0.4
1,106,141	-		PFLU_RS04930	0.77	-2.0
1,106,141	-		PFLU_RS04930	0.77	-0.8
1,106,141	-		PFLU_RS04930	0.77	-2.7
1,106,141	-		PFLU_RS04930	0.77	-3.3
1,106,141	-		PFLU_RS04930	0.77	-2.7
1,106,141	-		PFLU_RS04930	0.77	-3.1
1,106,141	-		PFLU_RS04930	0.77	-2.5
1,106,141	-		PFLU_RS04930	0.77	-0.9
1,106,141	-		PFLU_RS04930	0.77	-3.1
1,106,141	-		PFLU_RS04930	0.77	-3.8
1,106,182	+		PFLU_RS04930	0.80	+1.0
1,106,182	+		PFLU_RS04930	0.80	+0.1
1,106,182	+		PFLU_RS04930	0.80	-2.3
1,106,182	+		PFLU_RS04930	0.80	-2.5
1,106,182	+		PFLU_RS04930	0.80	-3.1
1,106,182	+		PFLU_RS04930	0.80	-1.9
1,106,182	+		PFLU_RS04930	0.80	-2.1
1,106,182	+		PFLU_RS04930	0.80	-1.8
1,106,182	+		PFLU_RS04930	0.80	-1.2
1,106,182	+		PFLU_RS04930	0.80	+2.6
1,106,183	-		PFLU_RS04930	0.80	+3.1
1,106,183	-		PFLU_RS04930	0.80	-3.0
1,106,183	-		PFLU_RS04930	0.80	-2.3
1,106,183	-		PFLU_RS04930	0.80	+2.1
1,106,183	-		PFLU_RS04930	0.80	-1.2
1,106,183	-		PFLU_RS04930	0.80	-0.9
1,106,183	-		PFLU_RS04930	0.80	+1.5
1,106,183	-		PFLU_RS04930	0.80	-2.4
1,106,183	-		PFLU_RS04930	0.80	-1.6
1,106,183	-		PFLU_RS04930	0.80	-2.8
1,106,183	-		PFLU_RS04930	0.80	-1.6
1,106,183	-		PFLU_RS04930	0.80	-1.2
1,106,183	-		PFLU_RS04930	0.80	-3.7
1,106,332	+				-0.5
1,106,332	+				-1.2
1,106,332	+				-3.7
1,106,332	+				-2.8
1,106,332	+				-0.9
1,106,332	+				-1.1
1,106,333	-				-2.9
1,106,333	-				-3.5
1,106,362	+				-2.0
1,106,362	+				-2.4
1,106,363	-				-1.5
1,106,363	-				-1.7
1,106,363	-				-1.8
1,106,363	-				-0.5
1,106,363	-				-0.6
1,106,444	-				+1.6
1,106,461	+				-1.7
1,106,461	+				-0.9
1,106,461	+				-1.9
1,106,461	+				-2.3
1,106,462	-				-3.2
1,106,462	-				-3.6
1,106,462	-				-2.4
1,106,462	-				-1.0
1,106,462	-				-0.7
1,106,462	-				-3.2
1,106,466	-				-1.8
1,106,514	+				-0.2
1,106,514	+				-0.1
1,106,520	+				-0.6
1,106,520	+				+1.4
1,106,520	+				+0.6
1,106,520	+				+2.3
1,106,520	+				-0.6
1,106,520	+				+1.7
1,106,521	-				+0.8
1,106,521	-				+0.8
1,106,521	-				-0.1
1,106,521	-				+1.1
1,106,545	+				+1.3
1,106,546	-				-1.1
1,106,546	-				-0.7
1,106,921	+		PFLU_RS04935	0.78	-2.8
1,106,922	-		PFLU_RS04935	0.78	-1.4
1,106,922	-		PFLU_RS04935	0.78	+0.4
1,106,922	-		PFLU_RS04935	0.78	-0.7
1,106,922	-		PFLU_RS04935	0.78	-1.1
1,106,922	-		PFLU_RS04935	0.78	-0.5
1,106,922	-		PFLU_RS04935	0.78	-0.8
1,106,940	+		PFLU_RS04935	0.82	+1.5
1,106,940	+		PFLU_RS04935	0.82	-1.8
1,106,940	+		PFLU_RS04935	0.82	-0.2
1,106,940	+		PFLU_RS04935	0.82	+0.5
1,106,941	-		PFLU_RS04935	0.82	+0.2
1,106,941	-		PFLU_RS04935	0.82	-0.7
1,106,966	-		PFLU_RS04935	0.87	+0.4
1,107,035	+				-2.2
1,107,035	+				+2.4
1,107,035	+				+1.2
1,107,036	-				+3.1
1,107,036	-				-0.6
1,107,036	-				+0.4
1,107,036	-				-0.7
1,107,036	-				+0.8
1,107,036	-				-2.4
1,107,036	-				+1.4
1,107,036	-				-0.2
1,107,036	-				+1.1
1,107,052	+		PFLU_RS04940	0.12	+0.5
1,107,369	+		PFLU_RS04945	0.23	+3.2
1,107,370	-		PFLU_RS04945	0.23	-1.3
1,107,370	-		PFLU_RS04945	0.23	-1.2
1,107,370	-		PFLU_RS04945	0.23	+1.5