Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS04435 and PFLU_RS04440 overlap by 1 nucleotides PFLU_RS04440 and PFLU_RS04445 are separated by 11 nucleotides PFLU_RS04445 and PFLU_RS04450 overlap by 4 nucleotides PFLU_RS04450 and PFLU_RS04455 are separated by 114 nucleotides PFLU_RS04455 and PFLU_RS04460 are separated by 23 nucleotides
PFLU_RS04435: PFLU_RS04435 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 997,479 to 998,276
_RS04435
PFLU_RS04440: PFLU_RS04440 - outer membrane lipid asymmetry maintenance protein MlaD, at 998,276 to 998,743
_RS04440
PFLU_RS04445: PFLU_RS04445 - ABC transporter substrate-binding protein, at 998,755 to 999,402
_RS04445
PFLU_RS04450: PFLU_RS04450 - STAS domain-containing protein, at 999,399 to 999,704
_RS04450
PFLU_RS04455: PFLU_RS04455 - BolA family transcriptional regulator, at 999,819 to 1,000,058
_RS04455
PFLU_RS04460: PFLU_RS04460 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,000,082 to 1,001,347
_RS04460
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 997.914 kb on + strand, within PFLU_RS04435 at 997.914 kb on + strand, within PFLU_RS04435 at 997.914 kb on + strand, within PFLU_RS04435 at 997.914 kb on + strand, within PFLU_RS04435 at 997.914 kb on + strand, within PFLU_RS04435 at 997.914 kb on + strand, within PFLU_RS04435 at 997.914 kb on + strand, within PFLU_RS04435 at 997.915 kb on - strand, within PFLU_RS04435 at 997.915 kb on - strand, within PFLU_RS04435 at 997.915 kb on - strand, within PFLU_RS04435 at 997.915 kb on - strand, within PFLU_RS04435 at 997.915 kb on - strand, within PFLU_RS04435 at 997.915 kb on - strand, within PFLU_RS04435 at 997.915 kb on - strand, within PFLU_RS04435 at 997.915 kb on - strand, within PFLU_RS04435 at 997.915 kb on - strand, within PFLU_RS04435 at 997.915 kb on - strand, within PFLU_RS04435 at 997.989 kb on - strand, within PFLU_RS04435 at 998.032 kb on - strand, within PFLU_RS04435 at 998.101 kb on + strand, within PFLU_RS04435 at 998.101 kb on + strand, within PFLU_RS04435 at 998.102 kb on - strand, within PFLU_RS04435 at 998.102 kb on - strand, within PFLU_RS04435 at 998.102 kb on - strand, within PFLU_RS04435 at 998.102 kb on - strand, within PFLU_RS04435 at 998.102 kb on - strand, within PFLU_RS04435 at 998.102 kb on - strand, within PFLU_RS04435 at 998.125 kb on + strand, within PFLU_RS04435 at 998.126 kb on - strand, within PFLU_RS04435 at 998.126 kb on - strand, within PFLU_RS04435 at 998.126 kb on - strand, within PFLU_RS04435 at 998.126 kb on - strand, within PFLU_RS04435 at 998.126 kb on - strand, within PFLU_RS04435 at 998.126 kb on - strand, within PFLU_RS04435 at 998.144 kb on - strand, within PFLU_RS04435 at 998.155 kb on - strand, within PFLU_RS04435 at 998.211 kb on + strand at 998.211 kb on + strand at 998.211 kb on + strand at 998.211 kb on + strand at 998.212 kb on - strand at 998.212 kb on - strand at 998.212 kb on - strand at 998.338 kb on - strand, within PFLU_RS04440 at 998.338 kb on - strand, within PFLU_RS04440 at 998.389 kb on + strand, within PFLU_RS04440 at 998.389 kb on + strand, within PFLU_RS04440 at 998.390 kb on - strand, within PFLU_RS04440 at 998.393 kb on + strand, within PFLU_RS04440 at 998.393 kb on + strand, within PFLU_RS04440 at 998.393 kb on + strand, within PFLU_RS04440 at 998.393 kb on + strand, within PFLU_RS04440 at 998.393 kb on + strand, within PFLU_RS04440 at 998.393 kb on + strand, within PFLU_RS04440 at 998.393 kb on + strand, within PFLU_RS04440 at 998.393 kb on + strand, within PFLU_RS04440 at 998.393 kb on + strand, within PFLU_RS04440 at 998.394 kb on - strand, within PFLU_RS04440 at 998.394 kb on - strand, within PFLU_RS04440 at 998.394 kb on - strand, within PFLU_RS04440 at 998.394 kb on - strand, within PFLU_RS04440 at 998.394 kb on - strand, within PFLU_RS04440 at 998.394 kb on - strand, within PFLU_RS04440 at 998.394 kb on - strand, within PFLU_RS04440 at 998.395 kb on + strand, within PFLU_RS04440 at 998.395 kb on + strand, within PFLU_RS04440 at 998.395 kb on + strand, within PFLU_RS04440 at 998.396 kb on - strand, within PFLU_RS04440 at 998.396 kb on - strand, within PFLU_RS04440 at 998.396 kb on - strand, within PFLU_RS04440 at 998.402 kb on + strand, within PFLU_RS04440 at 998.402 kb on + strand, within PFLU_RS04440 at 998.402 kb on + strand, within PFLU_RS04440 at 998.408 kb on + strand, within PFLU_RS04440 at 998.408 kb on + strand, within PFLU_RS04440 at 998.443 kb on + strand, within PFLU_RS04440 at 998.443 kb on + strand, within PFLU_RS04440 at 998.443 kb on + strand, within PFLU_RS04440 at 998.443 kb on + strand, within PFLU_RS04440 at 998.443 kb on + strand, within PFLU_RS04440 at 998.444 kb on - strand, within PFLU_RS04440 at 998.444 kb on - strand, within PFLU_RS04440 at 998.537 kb on - strand, within PFLU_RS04440 at 998.537 kb on - strand, within PFLU_RS04440 at 998.548 kb on + strand, within PFLU_RS04440 at 998.548 kb on + strand, within PFLU_RS04440 at 998.575 kb on + strand, within PFLU_RS04440 at 998.575 kb on + strand, within PFLU_RS04440 at 998.575 kb on + strand, within PFLU_RS04440 at 998.575 kb on + strand, within PFLU_RS04440 at 998.575 kb on + strand, within PFLU_RS04440 at 998.575 kb on + strand, within PFLU_RS04440 at 998.576 kb on - strand, within PFLU_RS04440 at 998.576 kb on - strand, within PFLU_RS04440 at 998.576 kb on - strand, within PFLU_RS04440 at 998.606 kb on + strand, within PFLU_RS04440 at 998.606 kb on + strand, within PFLU_RS04440 at 998.606 kb on + strand, within PFLU_RS04440 at 998.606 kb on + strand, within PFLU_RS04440 at 998.606 kb on + strand, within PFLU_RS04440 at 998.606 kb on + strand, within PFLU_RS04440 at 998.606 kb on + strand, within PFLU_RS04440 at 998.606 kb on + strand, within PFLU_RS04440 at 998.606 kb on + strand, within PFLU_RS04440 at 998.606 kb on + strand, within PFLU_RS04440 at 998.607 kb on - strand, within PFLU_RS04440 at 998.607 kb on - strand, within PFLU_RS04440 at 998.607 kb on - strand, within PFLU_RS04440 at 998.607 kb on - strand, within PFLU_RS04440 at 998.607 kb on - strand, within PFLU_RS04440 at 998.607 kb on - strand, within PFLU_RS04440 at 998.607 kb on - strand, within PFLU_RS04440 at 998.607 kb on - strand, within PFLU_RS04440 at 998.607 kb on - strand, within PFLU_RS04440 at 998.716 kb on + strand at 998.716 kb on + strand at 998.716 kb on + strand at 998.717 kb on - strand at 998.717 kb on - strand at 998.717 kb on - strand at 998.719 kb on + strand at 998.719 kb on + strand at 998.719 kb on + strand at 998.720 kb on - strand at 998.720 kb on - strand at 998.728 kb on + strand at 998.729 kb on - strand at 998.729 kb on - strand at 998.752 kb on + strand at 998.752 kb on + strand at 998.752 kb on + strand at 998.752 kb on + strand at 998.752 kb on + strand at 998.752 kb on + strand at 998.752 kb on + strand at 998.752 kb on + strand at 998.752 kb on + strand at 998.753 kb on - strand at 998.753 kb on - strand at 998.753 kb on - strand at 998.753 kb on - strand at 998.763 kb on + strand at 998.763 kb on + strand at 998.763 kb on + strand at 998.763 kb on + strand at 998.763 kb on + strand at 998.763 kb on + strand at 998.764 kb on - strand at 998.787 kb on - strand at 998.897 kb on - strand, within PFLU_RS04445 at 998.920 kb on + strand, within PFLU_RS04445 at 998.920 kb on + strand, within PFLU_RS04445 at 998.920 kb on + strand, within PFLU_RS04445 at 998.920 kb on + strand, within PFLU_RS04445 at 998.920 kb on + strand, within PFLU_RS04445 at 998.921 kb on - strand, within PFLU_RS04445 at 998.934 kb on + strand, within PFLU_RS04445 at 998.934 kb on + strand, within PFLU_RS04445 at 998.934 kb on + strand, within PFLU_RS04445 at 998.935 kb on - strand, within PFLU_RS04445 at 998.935 kb on - strand, within PFLU_RS04445 at 998.982 kb on + strand, within PFLU_RS04445 at 998.982 kb on + strand, within PFLU_RS04445 at 998.982 kb on + strand, within PFLU_RS04445 at 998.983 kb on - strand, within PFLU_RS04445 at 998.983 kb on - strand, within PFLU_RS04445 at 998.983 kb on - strand, within PFLU_RS04445 at 998.983 kb on - strand, within PFLU_RS04445 at 998.995 kb on + strand, within PFLU_RS04445 at 998.995 kb on + strand, within PFLU_RS04445 at 998.996 kb on - strand, within PFLU_RS04445 at 998.996 kb on - strand, within PFLU_RS04445 at 998.996 kb on - strand, within PFLU_RS04445 at 999.009 kb on + strand, within PFLU_RS04445 at 999.067 kb on + strand, within PFLU_RS04445 at 999.088 kb on + strand, within PFLU_RS04445 at 999.088 kb on + strand, within PFLU_RS04445 at 999.088 kb on + strand, within PFLU_RS04445 at 999.088 kb on + strand, within PFLU_RS04445 at 999.088 kb on + strand, within PFLU_RS04445 at 999.088 kb on + strand, within PFLU_RS04445 at 999.089 kb on - strand, within PFLU_RS04445 at 999.089 kb on - strand, within PFLU_RS04445 at 999.106 kb on - strand, within PFLU_RS04445 at 999.185 kb on - strand, within PFLU_RS04445 at 999.197 kb on - strand, within PFLU_RS04445 at 999.197 kb on - strand, within PFLU_RS04445 at 999.234 kb on + strand, within PFLU_RS04445 at 999.462 kb on + strand, within PFLU_RS04450 at 999.702 kb on + strand at 999.702 kb on + strand at 999.703 kb on - strand at 999.703 kb on - strand at 999.703 kb on - strand at 999.705 kb on + strand at 999.705 kb on + strand at 999.705 kb on + strand at 999.705 kb on + strand at 999.705 kb on + strand at 999.705 kb on + strand at 999.706 kb on - strand at 999.706 kb on - strand at 999.706 kb on - strand at 999.706 kb on - strand at 999.706 kb on - strand at 999.706 kb on - strand at 999.706 kb on - strand at 999.712 kb on + strand at 999.712 kb on + strand at 999.712 kb on + strand at 999.713 kb on - strand at 999.713 kb on - strand at 999.713 kb on - strand at 999.713 kb on - strand at 999.713 kb on - strand at 999.715 kb on + strand at 999.716 kb on - strand at 999.716 kb on - strand at 999.716 kb on - strand at 999.743 kb on - strand at 999.774 kb on + strand at 999.829 kb on + strand at 999.836 kb on + strand at 999.836 kb on + strand at 999.874 kb on + strand, within PFLU_RS04455 at 999.874 kb on + strand, within PFLU_RS04455 at 999.966 kb on + strand, within PFLU_RS04455 at 999.966 kb on + strand, within PFLU_RS04455 at 999.966 kb on + strand, within PFLU_RS04455 at 999.966 kb on + strand, within PFLU_RS04455 at 999.966 kb on + strand, within PFLU_RS04455 at 999.966 kb on + strand, within PFLU_RS04455 at 999.966 kb on + strand, within PFLU_RS04455 at 999.966 kb on + strand, within PFLU_RS04455 at 999.966 kb on + strand, within PFLU_RS04455 at 999.966 kb on + strand, within PFLU_RS04455
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 997,914 + PFLU_RS04435 0.55 +2.1 997,914 + PFLU_RS04435 0.55 -0.7 997,914 + PFLU_RS04435 0.55 +0.1 997,914 + PFLU_RS04435 0.55 +0.5 997,914 + PFLU_RS04435 0.55 +0.5 997,914 + PFLU_RS04435 0.55 +1.1 997,914 + PFLU_RS04435 0.55 +0.5 997,915 - PFLU_RS04435 0.55 +0.1 997,915 - PFLU_RS04435 0.55 -0.5 997,915 - PFLU_RS04435 0.55 -0.9 997,915 - PFLU_RS04435 0.55 -2.2 997,915 - PFLU_RS04435 0.55 -1.9 997,915 - PFLU_RS04435 0.55 -1.2 997,915 - PFLU_RS04435 0.55 -1.3 997,915 - PFLU_RS04435 0.55 -2.1 997,915 - PFLU_RS04435 0.55 -2.3 997,915 - PFLU_RS04435 0.55 +1.1 997,989 - PFLU_RS04435 0.64 -2.1 998,032 - PFLU_RS04435 0.69 +0.5 998,101 + PFLU_RS04435 0.78 +2.1 998,101 + PFLU_RS04435 0.78 +2.1 998,102 - PFLU_RS04435 0.78 -0.2 998,102 - PFLU_RS04435 0.78 -1.2 998,102 - PFLU_RS04435 0.78 -2.5 998,102 - PFLU_RS04435 0.78 -0.9 998,102 - PFLU_RS04435 0.78 -2.3 998,102 - PFLU_RS04435 0.78 -1.5 998,125 + PFLU_RS04435 0.81 +2.1 998,126 - PFLU_RS04435 0.81 +1.1 998,126 - PFLU_RS04435 0.81 -1.2 998,126 - PFLU_RS04435 0.81 -1.5 998,126 - PFLU_RS04435 0.81 +0.1 998,126 - PFLU_RS04435 0.81 -1.2 998,126 - PFLU_RS04435 0.81 -2.5 998,144 - PFLU_RS04435 0.83 -1.6 998,155 - PFLU_RS04435 0.85 -1.5 998,211 + +2.1 998,211 + +1.1 998,211 + +2.1 998,211 + +2.1 998,212 - -3.1 998,212 - -0.7 998,212 - -2.3 998,338 - PFLU_RS04440 0.13 +1.1 998,338 - PFLU_RS04440 0.13 -1.7 998,389 + PFLU_RS04440 0.24 -0.7 998,389 + PFLU_RS04440 0.24 -0.7 998,390 - PFLU_RS04440 0.24 -1.7 998,393 + PFLU_RS04440 0.25 +0.5 998,393 + PFLU_RS04440 0.25 +1.1 998,393 + PFLU_RS04440 0.25 -2.1 998,393 + PFLU_RS04440 0.25 -2.4 998,393 + PFLU_RS04440 0.25 -2.7 998,393 + PFLU_RS04440 0.25 -1.6 998,393 + PFLU_RS04440 0.25 -2.1 998,393 + PFLU_RS04440 0.25 -1.5 998,393 + PFLU_RS04440 0.25 -0.9 998,394 - PFLU_RS04440 0.25 +0.1 998,394 - PFLU_RS04440 0.25 -0.7 998,394 - PFLU_RS04440 0.25 -0.7 998,394 - PFLU_RS04440 0.25 -1.6 998,394 - PFLU_RS04440 0.25 -1.5 998,394 - PFLU_RS04440 0.25 -1.9 998,394 - PFLU_RS04440 0.25 +0.5 998,395 + PFLU_RS04440 0.25 -2.0 998,395 + PFLU_RS04440 0.25 -1.4 998,395 + PFLU_RS04440 0.25 -0.5 998,396 - PFLU_RS04440 0.26 -0.5 998,396 - PFLU_RS04440 0.26 -2.2 998,396 - PFLU_RS04440 0.26 -0.2 998,402 + PFLU_RS04440 0.27 -1.4 998,402 + PFLU_RS04440 0.27 -0.9 998,402 + PFLU_RS04440 0.27 -1.2 998,408 + PFLU_RS04440 0.28 -0.1 998,408 + PFLU_RS04440 0.28 -1.4 998,443 + PFLU_RS04440 0.36 -2.1 998,443 + PFLU_RS04440 0.36 -2.5 998,443 + PFLU_RS04440 0.36 -2.1 998,443 + PFLU_RS04440 0.36 -2.6 998,443 + PFLU_RS04440 0.36 -1.2 998,444 - PFLU_RS04440 0.36 -1.2 998,444 - PFLU_RS04440 0.36 -0.9 998,537 - PFLU_RS04440 0.56 -1.5 998,537 - PFLU_RS04440 0.56 -1.8 998,548 + PFLU_RS04440 0.58 -2.5 998,548 + PFLU_RS04440 0.58 -1.1 998,575 + PFLU_RS04440 0.64 +0.1 998,575 + PFLU_RS04440 0.64 -2.6 998,575 + PFLU_RS04440 0.64 -1.1 998,575 + PFLU_RS04440 0.64 -0.5 998,575 + PFLU_RS04440 0.64 -1.7 998,575 + PFLU_RS04440 0.64 -3.1 998,576 - PFLU_RS04440 0.64 -1.9 998,576 - PFLU_RS04440 0.64 -2.6 998,576 - PFLU_RS04440 0.64 -2.3 998,606 + PFLU_RS04440 0.71 -1.2 998,606 + PFLU_RS04440 0.71 -1.6 998,606 + PFLU_RS04440 0.71 -2.5 998,606 + PFLU_RS04440 0.71 -2.1 998,606 + PFLU_RS04440 0.71 -1.1 998,606 + PFLU_RS04440 0.71 -2.4 998,606 + PFLU_RS04440 0.71 -0.5 998,606 + PFLU_RS04440 0.71 -1.7 998,606 + PFLU_RS04440 0.71 -1.1 998,606 + PFLU_RS04440 0.71 -1.2 998,607 - PFLU_RS04440 0.71 -1.9 998,607 - PFLU_RS04440 0.71 +0.1 998,607 - PFLU_RS04440 0.71 -1.6 998,607 - PFLU_RS04440 0.71 -0.5 998,607 - PFLU_RS04440 0.71 -1.7 998,607 - PFLU_RS04440 0.71 -1.9 998,607 - PFLU_RS04440 0.71 -2.6 998,607 - PFLU_RS04440 0.71 -1.6 998,607 - PFLU_RS04440 0.71 -2.6 998,716 + +0.1 998,716 + -2.4 998,716 + +0.1 998,717 - +1.1 998,717 - -1.4 998,717 - -1.8 998,719 + -2.2 998,719 + -2.6 998,719 + -2.1 998,720 - -0.9 998,720 - -1.2 998,728 + -1.9 998,729 - -2.5 998,729 - -0.9 998,752 + -0.9 998,752 + -0.2 998,752 + -0.7 998,752 + -1.6 998,752 + -2.8 998,752 + -1.4 998,752 + +0.1 998,752 + +0.2 998,752 + +1.1 998,753 - -1.8 998,753 - -1.2 998,753 - -0.5 998,753 - -2.6 998,763 + +0.7 998,763 + -1.4 998,763 + -1.8 998,763 + +0.1 998,763 + -0.9 998,763 + -2.1 998,764 - -2.3 998,787 - -1.2 998,897 - PFLU_RS04445 0.22 +1.1 998,920 + PFLU_RS04445 0.25 -2.1 998,920 + PFLU_RS04445 0.25 -0.9 998,920 + PFLU_RS04445 0.25 -1.8 998,920 + PFLU_RS04445 0.25 -2.4 998,920 + PFLU_RS04445 0.25 -2.3 998,921 - PFLU_RS04445 0.26 -1.1 998,934 + PFLU_RS04445 0.28 -0.5 998,934 + PFLU_RS04445 0.28 -2.4 998,934 + PFLU_RS04445 0.28 -2.9 998,935 - PFLU_RS04445 0.28 -1.8 998,935 - PFLU_RS04445 0.28 -2.0 998,982 + PFLU_RS04445 0.35 -0.5 998,982 + PFLU_RS04445 0.35 +0.5 998,982 + PFLU_RS04445 0.35 -2.2 998,983 - PFLU_RS04445 0.35 +0.1 998,983 - PFLU_RS04445 0.35 -2.1 998,983 - PFLU_RS04445 0.35 -2.2 998,983 - PFLU_RS04445 0.35 -1.1 998,995 + PFLU_RS04445 0.37 -2.5 998,995 + PFLU_RS04445 0.37 -1.6 998,996 - PFLU_RS04445 0.37 -1.5 998,996 - PFLU_RS04445 0.37 -1.6 998,996 - PFLU_RS04445 0.37 -1.2 999,009 + PFLU_RS04445 0.39 -3.1 999,067 + PFLU_RS04445 0.48 -1.6 999,088 + PFLU_RS04445 0.51 -2.5 999,088 + PFLU_RS04445 0.51 -0.7 999,088 + PFLU_RS04445 0.51 -1.2 999,088 + PFLU_RS04445 0.51 -1.2 999,088 + PFLU_RS04445 0.51 -0.7 999,088 + PFLU_RS04445 0.51 -2.7 999,089 - PFLU_RS04445 0.52 -1.9 999,089 - PFLU_RS04445 0.52 -1.8 999,106 - PFLU_RS04445 0.54 -2.3 999,185 - PFLU_RS04445 0.66 -2.7 999,197 - PFLU_RS04445 0.68 -1.7 999,197 - PFLU_RS04445 0.68 -2.2 999,234 + PFLU_RS04445 0.74 -1.5 999,462 + PFLU_RS04450 0.21 -2.2 999,702 + -0.9 999,702 + +1.1 999,703 - +1.0 999,703 - -0.9 999,703 - +1.5 999,705 + -0.1 999,705 + -2.1 999,705 + -1.0 999,705 + +2.6 999,705 + -1.7 999,705 + -2.5 999,706 - +0.4 999,706 - +1.9 999,706 - +0.3 999,706 - +1.1 999,706 - -0.4 999,706 - -0.9 999,706 - -1.1 999,712 + -0.6 999,712 + +0.6 999,712 + +0.7 999,713 - -1.4 999,713 - +1.6 999,713 - +1.7 999,713 - -0.4 999,713 - -1.4 999,715 + +0.3 999,716 - +0.3 999,716 - -0.5 999,716 - +1.2 999,743 - -1.8 999,774 + +0.1 999,829 + -0.5 999,836 + -2.3 999,836 + -3.1 999,874 + PFLU_RS04455 0.23 -1.4 999,874 + PFLU_RS04455 0.23 -0.9 999,966 + PFLU_RS04455 0.61 +3.1 999,966 + PFLU_RS04455 0.61 -0.2 999,966 + PFLU_RS04455 0.61 -1.5 999,966 + PFLU_RS04455 0.61 -2.1 999,966 + PFLU_RS04455 0.61 +0.7 999,966 + PFLU_RS04455 0.61 +0.2 999,966 + PFLU_RS04455 0.61 +1.0 999,966 + PFLU_RS04455 0.61 -1.8 999,966 + PFLU_RS04455 0.61 +1.1 999,966 + PFLU_RS04455 0.61 -1.7
Or see this region's nucleotide sequence