Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02370

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02365 and PFLU_RS02370 overlap by 4 nucleotidesPFLU_RS02370 and PFLU_RS02375 are separated by 54 nucleotides PFLU_RS02365: PFLU_RS02365 - glycosyltransferase, at 541,184 to 542,332 _RS02365 PFLU_RS02370: PFLU_RS02370 - glycosyltransferase, at 542,329 to 543,210 _RS02370 PFLU_RS02375: PFLU_RS02375 - polymerase, at 543,265 to 545,127 _RS02375 Position (kb) 542 543 544Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 541.368 kb on - strand, within PFLU_RS02365at 541.368 kb on - strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.427 kb on + strand, within PFLU_RS02365at 541.428 kb on - strand, within PFLU_RS02365at 541.428 kb on - strand, within PFLU_RS02365at 541.428 kb on - strand, within PFLU_RS02365at 541.428 kb on - strand, within PFLU_RS02365at 541.428 kb on - strand, within PFLU_RS02365at 541.428 kb on - strand, within PFLU_RS02365at 541.428 kb on - strand, within PFLU_RS02365at 541.433 kb on + strand, within PFLU_RS02365at 541.433 kb on + strand, within PFLU_RS02365at 541.434 kb on - strand, within PFLU_RS02365at 541.434 kb on - strand, within PFLU_RS02365at 541.646 kb on + strand, within PFLU_RS02365at 541.868 kb on + strand, within PFLU_RS02365at 541.868 kb on + strand, within PFLU_RS02365at 541.868 kb on + strand, within PFLU_RS02365at 541.869 kb on - strand, within PFLU_RS02365at 541.994 kb on + strand, within PFLU_RS02365at 541.994 kb on + strand, within PFLU_RS02365at 541.994 kb on + strand, within PFLU_RS02365at 541.994 kb on + strand, within PFLU_RS02365at 541.995 kb on - strand, within PFLU_RS02365at 541.995 kb on - strand, within PFLU_RS02365at 541.995 kb on - strand, within PFLU_RS02365at 541.995 kb on - strand, within PFLU_RS02365at 541.995 kb on - strand, within PFLU_RS02365at 541.995 kb on - strand, within PFLU_RS02365at 542.011 kb on + strand, within PFLU_RS02365at 542.012 kb on - strand, within PFLU_RS02365at 542.012 kb on - strand, within PFLU_RS02365at 542.189 kb on + strand, within PFLU_RS02365at 542.189 kb on + strand, within PFLU_RS02365at 542.189 kb on + strand, within PFLU_RS02365at 542.189 kb on + strand, within PFLU_RS02365at 542.189 kb on + strand, within PFLU_RS02365at 542.189 kb on + strand, within PFLU_RS02365at 542.190 kb on - strand, within PFLU_RS02365at 542.190 kb on - strand, within PFLU_RS02365at 542.190 kb on - strand, within PFLU_RS02365at 542.190 kb on - strand, within PFLU_RS02365at 542.190 kb on - strand, within PFLU_RS02365at 542.190 kb on - strand, within PFLU_RS02365at 542.190 kb on - strand, within PFLU_RS02365at 542.190 kb on - strand, within PFLU_RS02365at 542.190 kb on - strand, within PFLU_RS02365at 542.286 kb on - strandat 542.286 kb on - strandat 542.319 kb on + strandat 542.319 kb on + strandat 542.319 kb on + strandat 542.319 kb on + strandat 542.319 kb on + strandat 542.319 kb on + strandat 542.319 kb on + strandat 542.319 kb on + strandat 542.319 kb on + strandat 542.319 kb on + strandat 542.320 kb on - strandat 542.320 kb on - strandat 542.320 kb on - strandat 542.320 kb on - strandat 542.320 kb on - strandat 542.320 kb on - strandat 542.320 kb on - strandat 542.323 kb on + strandat 542.324 kb on - strandat 542.324 kb on - strandat 542.371 kb on + strandat 542.371 kb on + strandat 542.371 kb on + strandat 542.371 kb on + strandat 542.372 kb on - strandat 542.386 kb on + strandat 542.386 kb on + strandat 542.387 kb on - strandat 542.387 kb on - strandat 542.388 kb on + strandat 542.389 kb on - strandat 542.650 kb on + strand, within PFLU_RS02370at 542.651 kb on - strand, within PFLU_RS02370at 542.651 kb on - strand, within PFLU_RS02370at 542.651 kb on - strand, within PFLU_RS02370at 542.651 kb on - strand, within PFLU_RS02370at 542.651 kb on - strand, within PFLU_RS02370at 542.651 kb on - strand, within PFLU_RS02370at 542.917 kb on + strand, within PFLU_RS02370at 542.977 kb on + strand, within PFLU_RS02370at 542.977 kb on + strand, within PFLU_RS02370at 542.977 kb on + strand, within PFLU_RS02370at 542.978 kb on - strand, within PFLU_RS02370at 542.978 kb on - strand, within PFLU_RS02370at 542.978 kb on - strand, within PFLU_RS02370at 542.978 kb on - strand, within PFLU_RS02370at 542.992 kb on + strand, within PFLU_RS02370at 542.992 kb on + strand, within PFLU_RS02370at 542.992 kb on + strand, within PFLU_RS02370at 542.992 kb on + strand, within PFLU_RS02370at 542.992 kb on + strand, within PFLU_RS02370at 542.992 kb on + strand, within PFLU_RS02370at 542.993 kb on - strand, within PFLU_RS02370at 542.993 kb on - strand, within PFLU_RS02370at 542.993 kb on - strand, within PFLU_RS02370at 542.993 kb on - strand, within PFLU_RS02370at 542.993 kb on - strand, within PFLU_RS02370at 543.019 kb on + strand, within PFLU_RS02370at 543.020 kb on - strand, within PFLU_RS02370at 543.020 kb on - strand, within PFLU_RS02370at 543.046 kb on + strand, within PFLU_RS02370at 543.047 kb on - strand, within PFLU_RS02370at 543.047 kb on - strand, within PFLU_RS02370at 543.061 kb on + strand, within PFLU_RS02370at 543.062 kb on - strand, within PFLU_RS02370at 543.185 kb on + strandat 543.185 kb on + strandat 543.186 kb on - strandat 543.186 kb on - strandat 543.187 kb on + strandat 543.188 kb on - strandat 543.188 kb on - strandat 543.188 kb on - strandat 543.188 kb on - strandat 543.213 kb on + strandat 543.238 kb on + strandat 543.250 kb on + strandat 543.250 kb on + strandat 543.251 kb on - strandat 543.251 kb on - strandat 543.263 kb on + strandat 543.264 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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541,368 - PFLU_RS02365 0.16 -2.1
541,368 - PFLU_RS02365 0.16 -1.4
541,427 + PFLU_RS02365 0.21 -4.1
541,427 + PFLU_RS02365 0.21 -2.2
541,427 + PFLU_RS02365 0.21 -3.7
541,427 + PFLU_RS02365 0.21 -0.9
541,427 + PFLU_RS02365 0.21 -0.4
541,427 + PFLU_RS02365 0.21 -2.5
541,427 + PFLU_RS02365 0.21 -2.5
541,427 + PFLU_RS02365 0.21 +1.5
541,427 + PFLU_RS02365 0.21 -4.0
541,427 + PFLU_RS02365 0.21 -1.3
541,427 + PFLU_RS02365 0.21 -2.2
541,427 + PFLU_RS02365 0.21 -2.9
541,427 + PFLU_RS02365 0.21 -1.5
541,427 + PFLU_RS02365 0.21 -2.9
541,427 + PFLU_RS02365 0.21 -4.0
541,428 - PFLU_RS02365 0.21 -1.6
541,428 - PFLU_RS02365 0.21 -3.2
541,428 - PFLU_RS02365 0.21 -3.1
541,428 - PFLU_RS02365 0.21 -1.9
541,428 - PFLU_RS02365 0.21 -2.5
541,428 - PFLU_RS02365 0.21 -1.3
541,428 - PFLU_RS02365 0.21 -3.5
541,433 + PFLU_RS02365 0.22 -3.6
541,433 + PFLU_RS02365 0.22 -0.3
541,434 - PFLU_RS02365 0.22 -3.1
541,434 - PFLU_RS02365 0.22 -3.3
541,646 + PFLU_RS02365 0.40 -4.0
541,868 + PFLU_RS02365 0.60 -0.0
541,868 + PFLU_RS02365 0.60 -2.3
541,868 + PFLU_RS02365 0.60 -2.0
541,869 - PFLU_RS02365 0.60 -0.7
541,994 + PFLU_RS02365 0.70 -3.7
541,994 + PFLU_RS02365 0.70 +2.3
541,994 + PFLU_RS02365 0.70 -1.5
541,994 + PFLU_RS02365 0.70 -3.4
541,995 - PFLU_RS02365 0.71 -3.0
541,995 - PFLU_RS02365 0.71 -1.4
541,995 - PFLU_RS02365 0.71 -2.5
541,995 - PFLU_RS02365 0.71 -3.1
541,995 - PFLU_RS02365 0.71 -3.3
541,995 - PFLU_RS02365 0.71 -2.5
542,011 + PFLU_RS02365 0.72 -3.9
542,012 - PFLU_RS02365 0.72 -3.0
542,012 - PFLU_RS02365 0.72 -0.3
542,189 + PFLU_RS02365 0.87 -3.3
542,189 + PFLU_RS02365 0.87 -0.9
542,189 + PFLU_RS02365 0.87 -2.8
542,189 + PFLU_RS02365 0.87 -1.3
542,189 + PFLU_RS02365 0.87 -2.2
542,189 + PFLU_RS02365 0.87 -2.6
542,190 - PFLU_RS02365 0.88 -3.8
542,190 - PFLU_RS02365 0.88 -3.4
542,190 - PFLU_RS02365 0.88 -0.5
542,190 - PFLU_RS02365 0.88 -3.7
542,190 - PFLU_RS02365 0.88 -3.3
542,190 - PFLU_RS02365 0.88 -2.9
542,190 - PFLU_RS02365 0.88 -2.0
542,190 - PFLU_RS02365 0.88 +0.7
542,190 - PFLU_RS02365 0.88 -3.4
542,286 - -2.0
542,286 - -3.2
542,319 + -1.2
542,319 + -1.5
542,319 + -1.8
542,319 + -0.8
542,319 + +0.1
542,319 + -1.1
542,319 + +1.2
542,319 + -0.9
542,319 + -2.9
542,319 + -1.2
542,320 - -3.9
542,320 - -2.4
542,320 - -3.5
542,320 - -2.7
542,320 - -2.3
542,320 - -1.2
542,320 - -0.3
542,323 + -0.3
542,324 - -3.4
542,324 - -4.5
542,371 + -4.0
542,371 + -0.0
542,371 + -2.6
542,371 + -2.5
542,372 - -3.8
542,386 + -1.8
542,386 + -2.2
542,387 - -1.7
542,387 - -3.0
542,388 + -2.5
542,389 - -4.1
542,650 + PFLU_RS02370 0.36 -3.5
542,651 - PFLU_RS02370 0.37 -2.3
542,651 - PFLU_RS02370 0.37 -2.6
542,651 - PFLU_RS02370 0.37 -4.4
542,651 - PFLU_RS02370 0.37 -1.2
542,651 - PFLU_RS02370 0.37 -4.1
542,651 - PFLU_RS02370 0.37 -4.1
542,917 + PFLU_RS02370 0.67 -1.5
542,977 + PFLU_RS02370 0.73 -4.5
542,977 + PFLU_RS02370 0.73 -2.4
542,977 + PFLU_RS02370 0.73 -2.4
542,978 - PFLU_RS02370 0.74 -2.6
542,978 - PFLU_RS02370 0.74 -1.9
542,978 - PFLU_RS02370 0.74 -1.7
542,978 - PFLU_RS02370 0.74 -2.7
542,992 + PFLU_RS02370 0.75 -3.0
542,992 + PFLU_RS02370 0.75 -3.1
542,992 + PFLU_RS02370 0.75 -0.8
542,992 + PFLU_RS02370 0.75 -2.7
542,992 + PFLU_RS02370 0.75 -4.1
542,992 + PFLU_RS02370 0.75 -3.8
542,993 - PFLU_RS02370 0.75 -1.0
542,993 - PFLU_RS02370 0.75 -1.1
542,993 - PFLU_RS02370 0.75 -3.6
542,993 - PFLU_RS02370 0.75 -2.3
542,993 - PFLU_RS02370 0.75 -2.9
543,019 + PFLU_RS02370 0.78 -1.8
543,020 - PFLU_RS02370 0.78 -2.9
543,020 - PFLU_RS02370 0.78 -1.6
543,046 + PFLU_RS02370 0.81 -2.4
543,047 - PFLU_RS02370 0.81 -2.9
543,047 - PFLU_RS02370 0.81 -3.8
543,061 + PFLU_RS02370 0.83 -0.7
543,062 - PFLU_RS02370 0.83 -2.4
543,185 + -3.2
543,185 + -1.0
543,186 - -2.8
543,186 - -0.9
543,187 + -3.9
543,188 - -2.4
543,188 - -1.6
543,188 - -1.7
543,188 - -2.6
543,213 + -0.2
543,238 + +0.9
543,250 + -1.3
543,250 + +0.9
543,251 - -0.8
543,251 - -1.7
543,263 + -0.3
543,264 - -3.0

Or see this region's nucleotide sequence