Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02205

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02200 and PFLU_RS02205 are separated by 50 nucleotidesPFLU_RS02205 and PFLU_RS02210 are separated by 334 nucleotides PFLU_RS02200: PFLU_RS02200 - mechanosensitive channel MscK, at 490,640 to 494,023 _RS02200 PFLU_RS02205: PFLU_RS02205 - potassium/proton antiporter, at 494,074 to 495,816 _RS02205 PFLU_RS02210: PFLU_RS02210 - methyl-accepting chemotaxis protein, at 496,151 to 497,776 _RS02210 Position (kb) 494 495 496Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 493.101 kb on - strand, within PFLU_RS02200at 493.176 kb on + strand, within PFLU_RS02200at 493.177 kb on - strand, within PFLU_RS02200at 493.177 kb on - strand, within PFLU_RS02200at 493.489 kb on + strand, within PFLU_RS02200at 493.489 kb on + strand, within PFLU_RS02200at 493.489 kb on + strand, within PFLU_RS02200at 493.489 kb on + strand, within PFLU_RS02200at 493.489 kb on + strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.534 kb on + strand, within PFLU_RS02200at 493.534 kb on + strand, within PFLU_RS02200at 493.534 kb on + strand, within PFLU_RS02200at 493.535 kb on - strand, within PFLU_RS02200at 493.535 kb on - strand, within PFLU_RS02200at 493.535 kb on - strand, within PFLU_RS02200at 493.535 kb on - strand, within PFLU_RS02200at 493.661 kb on + strand, within PFLU_RS02200at 493.661 kb on + strand, within PFLU_RS02200at 493.662 kb on - strand, within PFLU_RS02200at 493.662 kb on - strand, within PFLU_RS02200at 493.836 kb on + strandat 493.836 kb on + strandat 493.837 kb on - strandat 493.837 kb on - strandat 493.970 kb on - strandat 494.023 kb on + strandat 494.445 kb on + strand, within PFLU_RS02205at 494.445 kb on + strand, within PFLU_RS02205at 494.445 kb on + strand, within PFLU_RS02205at 494.446 kb on - strand, within PFLU_RS02205at 494.446 kb on - strand, within PFLU_RS02205at 494.729 kb on + strand, within PFLU_RS02205at 494.729 kb on + strand, within PFLU_RS02205at 494.729 kb on + strand, within PFLU_RS02205at 494.729 kb on + strand, within PFLU_RS02205at 494.729 kb on + strand, within PFLU_RS02205at 494.730 kb on - strand, within PFLU_RS02205at 494.730 kb on - strand, within PFLU_RS02205at 494.730 kb on - strand, within PFLU_RS02205at 494.928 kb on + strand, within PFLU_RS02205at 494.949 kb on + strand, within PFLU_RS02205at 494.949 kb on + strand, within PFLU_RS02205at 495.012 kb on + strand, within PFLU_RS02205at 495.012 kb on + strand, within PFLU_RS02205at 495.013 kb on - strand, within PFLU_RS02205at 495.071 kb on + strand, within PFLU_RS02205at 495.071 kb on + strand, within PFLU_RS02205at 495.071 kb on + strand, within PFLU_RS02205at 495.072 kb on - strand, within PFLU_RS02205at 495.072 kb on - strand, within PFLU_RS02205at 495.072 kb on - strand, within PFLU_RS02205at 495.072 kb on - strand, within PFLU_RS02205at 495.465 kb on + strand, within PFLU_RS02205at 495.514 kb on - strand, within PFLU_RS02205at 495.514 kb on - strand, within PFLU_RS02205at 495.604 kb on + strand, within PFLU_RS02205at 495.604 kb on + strand, within PFLU_RS02205at 495.605 kb on - strand, within PFLU_RS02205at 495.605 kb on - strand, within PFLU_RS02205at 495.605 kb on - strand, within PFLU_RS02205at 495.605 kb on - strand, within PFLU_RS02205at 495.647 kb on + strandat 495.648 kb on - strandat 495.648 kb on - strandat 495.748 kb on + strandat 495.823 kb on + strandat 495.823 kb on + strandat 495.823 kb on + strandat 495.824 kb on - strandat 495.824 kb on - strandat 495.824 kb on - strandat 495.884 kb on + strandat 495.884 kb on + strandat 495.884 kb on + strandat 495.884 kb on + strandat 495.884 kb on + strandat 495.885 kb on - strandat 495.885 kb on - strandat 495.885 kb on - strandat 496.058 kb on + strandat 496.064 kb on + strandat 496.065 kb on - strandat 496.153 kb on - strandat 496.153 kb on - strandat 496.153 kb on - strandat 496.170 kb on - strandat 496.250 kb on + strandat 496.279 kb on + strandat 496.715 kb on + strand, within PFLU_RS02210at 496.715 kb on + strand, within PFLU_RS02210at 496.715 kb on + strand, within PFLU_RS02210at 496.715 kb on + strand, within PFLU_RS02210at 496.715 kb on + strand, within PFLU_RS02210at 496.715 kb on + strand, within PFLU_RS02210at 496.716 kb on - strand, within PFLU_RS02210at 496.716 kb on - strand, within PFLU_RS02210at 496.716 kb on - strand, within PFLU_RS02210

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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493,101 - PFLU_RS02200 0.73 -1.7
493,176 + PFLU_RS02200 0.75 +2.6
493,177 - PFLU_RS02200 0.75 +0.3
493,177 - PFLU_RS02200 0.75 +0.1
493,489 + PFLU_RS02200 0.84 +1.2
493,489 + PFLU_RS02200 0.84 -0.0
493,489 + PFLU_RS02200 0.84 -2.8
493,489 + PFLU_RS02200 0.84 +3.1
493,489 + PFLU_RS02200 0.84 -2.6
493,490 - PFLU_RS02200 0.84 -1.0
493,490 - PFLU_RS02200 0.84 +1.4
493,534 + PFLU_RS02200 0.86 -0.7
493,534 + PFLU_RS02200 0.86 +0.1
493,534 + PFLU_RS02200 0.86 -1.9
493,535 - PFLU_RS02200 0.86 -0.6
493,535 - PFLU_RS02200 0.86 +0.4
493,535 - PFLU_RS02200 0.86 -0.3
493,535 - PFLU_RS02200 0.86 +1.4
493,661 + PFLU_RS02200 0.89 -0.3
493,661 + PFLU_RS02200 0.89 +2.0
493,662 - PFLU_RS02200 0.89 +1.0
493,662 - PFLU_RS02200 0.89 +0.1
493,836 + -0.7
493,836 + -2.5
493,837 - -1.1
493,837 - +0.5
493,970 - +0.1
494,023 + -2.4
494,445 + PFLU_RS02205 0.21 -2.3
494,445 + PFLU_RS02205 0.21 -1.2
494,445 + PFLU_RS02205 0.21 -2.8
494,446 - PFLU_RS02205 0.21 -0.3
494,446 - PFLU_RS02205 0.21 +1.2
494,729 + PFLU_RS02205 0.38 -0.5
494,729 + PFLU_RS02205 0.38 -2.5
494,729 + PFLU_RS02205 0.38 -2.9
494,729 + PFLU_RS02205 0.38 -2.3
494,729 + PFLU_RS02205 0.38 -2.7
494,730 - PFLU_RS02205 0.38 -2.0
494,730 - PFLU_RS02205 0.38 -2.0
494,730 - PFLU_RS02205 0.38 +0.2
494,928 + PFLU_RS02205 0.49 -3.4
494,949 + PFLU_RS02205 0.50 -3.1
494,949 + PFLU_RS02205 0.50 -2.4
495,012 + PFLU_RS02205 0.54 -2.3
495,012 + PFLU_RS02205 0.54 -2.3
495,013 - PFLU_RS02205 0.54 +0.9
495,071 + PFLU_RS02205 0.57 -3.0
495,071 + PFLU_RS02205 0.57 -2.5
495,071 + PFLU_RS02205 0.57 -2.8
495,072 - PFLU_RS02205 0.57 +2.0
495,072 - PFLU_RS02205 0.57 +2.9
495,072 - PFLU_RS02205 0.57 -3.5
495,072 - PFLU_RS02205 0.57 -2.0
495,465 + PFLU_RS02205 0.80 -2.7
495,514 - PFLU_RS02205 0.83 -2.2
495,514 - PFLU_RS02205 0.83 -2.0
495,604 + PFLU_RS02205 0.88 +0.4
495,604 + PFLU_RS02205 0.88 +0.7
495,605 - PFLU_RS02205 0.88 -2.4
495,605 - PFLU_RS02205 0.88 -2.7
495,605 - PFLU_RS02205 0.88 -2.1
495,605 - PFLU_RS02205 0.88 -2.7
495,647 + -3.7
495,648 - +1.3
495,648 - -3.0
495,748 + +0.7
495,823 + -1.2
495,823 + -0.7
495,823 + -1.4
495,824 - -1.1
495,824 - -1.9
495,824 - -0.3
495,884 + +0.5
495,884 + -1.0
495,884 + -0.6
495,884 + -0.6
495,884 + +0.5
495,885 - -0.3
495,885 - -2.0
495,885 - -0.4
496,058 + -0.5
496,064 + -3.4
496,065 - -2.2
496,153 - +0.1
496,153 - -1.6
496,153 - +0.5
496,170 - +0.7
496,250 + -2.4
496,279 + -0.5
496,715 + PFLU_RS02210 0.35 -2.0
496,715 + PFLU_RS02210 0.35 +1.4
496,715 + PFLU_RS02210 0.35 -3.0
496,715 + PFLU_RS02210 0.35 +1.5
496,715 + PFLU_RS02210 0.35 +2.1
496,715 + PFLU_RS02210 0.35 +0.7
496,716 - PFLU_RS02210 0.35 -0.8
496,716 - PFLU_RS02210 0.35 +1.3
496,716 - PFLU_RS02210 0.35 +0.6

Or see this region's nucleotide sequence