Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01570 and PFLU_RS01575 are separated by 149 nucleotides PFLU_RS01575 and PFLU_RS01580 are separated by 86 nucleotides PFLU_RS01580 and PFLU_RS01585 are separated by 103 nucleotides PFLU_RS01585 and PFLU_RS01590 overlap by 4 nucleotides
PFLU_RS01570: PFLU_RS01570 - hypothetical protein, at 353,561 to 353,836
_RS01570
PFLU_RS01575: PFLU_RS01575 - hypothetical protein, at 353,986 to 354,543
_RS01575
PFLU_RS01580: PFLU_RS01580 - tRNA-Phe, at 354,630 to 354,705
_RS01580
PFLU_RS01585: PFLU_RS01585 - oxidative damage protection protein, at 354,809 to 355,081
_RS01585
PFLU_RS01590: PFLU_RS01590 - A/G-specific adenine glycosylase, at 355,078 to 356,145
_RS01590
Position (kb) 354
355
356 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 353.812 kb on + strand at 353.812 kb on + strand at 353.812 kb on + strand at 353.812 kb on + strand at 353.812 kb on + strand at 353.812 kb on + strand at 353.813 kb on - strand at 353.813 kb on - strand at 353.813 kb on - strand at 353.813 kb on - strand at 353.813 kb on - strand at 353.900 kb on + strand at 353.900 kb on + strand at 353.901 kb on - strand at 353.939 kb on - strand at 353.939 kb on - strand at 353.958 kb on - strand at 353.958 kb on - strand at 354.029 kb on - strand at 354.040 kb on - strand at 354.048 kb on + strand, within PFLU_RS01575 at 354.049 kb on - strand, within PFLU_RS01575 at 354.063 kb on + strand, within PFLU_RS01575 at 354.063 kb on + strand, within PFLU_RS01575 at 354.063 kb on + strand, within PFLU_RS01575 at 354.063 kb on + strand, within PFLU_RS01575 at 354.064 kb on - strand, within PFLU_RS01575 at 354.064 kb on - strand, within PFLU_RS01575 at 354.064 kb on - strand, within PFLU_RS01575 at 354.064 kb on - strand, within PFLU_RS01575 at 354.064 kb on - strand, within PFLU_RS01575 at 354.064 kb on - strand, within PFLU_RS01575 at 354.064 kb on - strand, within PFLU_RS01575 at 354.148 kb on + strand, within PFLU_RS01575 at 354.148 kb on + strand, within PFLU_RS01575 at 354.149 kb on - strand, within PFLU_RS01575 at 354.149 kb on - strand, within PFLU_RS01575 at 354.149 kb on - strand, within PFLU_RS01575 at 354.149 kb on - strand, within PFLU_RS01575 at 354.206 kb on + strand, within PFLU_RS01575 at 354.206 kb on + strand, within PFLU_RS01575 at 354.206 kb on + strand, within PFLU_RS01575 at 354.206 kb on + strand, within PFLU_RS01575 at 354.207 kb on - strand, within PFLU_RS01575 at 354.312 kb on + strand, within PFLU_RS01575 at 354.312 kb on + strand, within PFLU_RS01575 at 354.313 kb on - strand, within PFLU_RS01575 at 354.328 kb on + strand, within PFLU_RS01575 at 354.344 kb on - strand, within PFLU_RS01575 at 354.397 kb on + strand, within PFLU_RS01575 at 354.397 kb on + strand, within PFLU_RS01575 at 354.397 kb on + strand, within PFLU_RS01575 at 354.398 kb on - strand, within PFLU_RS01575 at 354.398 kb on - strand, within PFLU_RS01575 at 354.398 kb on - strand, within PFLU_RS01575 at 354.398 kb on - strand, within PFLU_RS01575 at 354.400 kb on + strand, within PFLU_RS01575 at 354.400 kb on + strand, within PFLU_RS01575 at 354.400 kb on + strand, within PFLU_RS01575 at 354.400 kb on + strand, within PFLU_RS01575 at 354.400 kb on + strand, within PFLU_RS01575 at 354.401 kb on - strand, within PFLU_RS01575 at 354.401 kb on - strand, within PFLU_RS01575 at 354.401 kb on - strand, within PFLU_RS01575 at 354.401 kb on - strand, within PFLU_RS01575 at 354.401 kb on - strand, within PFLU_RS01575 at 354.401 kb on - strand, within PFLU_RS01575 at 354.401 kb on - strand, within PFLU_RS01575 at 354.401 kb on - strand, within PFLU_RS01575 at 354.401 kb on - strand, within PFLU_RS01575 at 354.429 kb on + strand, within PFLU_RS01575 at 354.429 kb on + strand, within PFLU_RS01575 at 354.430 kb on - strand, within PFLU_RS01575 at 354.450 kb on + strand, within PFLU_RS01575 at 354.486 kb on - strand, within PFLU_RS01575 at 354.503 kb on + strand at 354.503 kb on + strand at 354.503 kb on + strand at 354.503 kb on + strand at 354.504 kb on - strand at 354.515 kb on + strand at 354.516 kb on - strand at 354.541 kb on + strand at 354.766 kb on - strand at 354.769 kb on + strand at 354.770 kb on - strand at 354.782 kb on + strand at 354.829 kb on - strand at 354.829 kb on - strand at 354.829 kb on - strand at 354.846 kb on + strand, within PFLU_RS01585 at 354.846 kb on + strand, within PFLU_RS01585 at 354.888 kb on + strand, within PFLU_RS01585 at 354.889 kb on - strand, within PFLU_RS01585 at 354.889 kb on - strand, within PFLU_RS01585 at 354.889 kb on - strand, within PFLU_RS01585 at 354.889 kb on - strand, within PFLU_RS01585 at 354.892 kb on + strand, within PFLU_RS01585 at 354.892 kb on + strand, within PFLU_RS01585 at 354.892 kb on + strand, within PFLU_RS01585 at 354.892 kb on + strand, within PFLU_RS01585 at 354.892 kb on + strand, within PFLU_RS01585 at 354.892 kb on + strand, within PFLU_RS01585 at 354.892 kb on + strand, within PFLU_RS01585 at 354.893 kb on - strand, within PFLU_RS01585 at 354.893 kb on - strand, within PFLU_RS01585 at 354.893 kb on - strand, within PFLU_RS01585 at 354.893 kb on - strand, within PFLU_RS01585 at 354.893 kb on - strand, within PFLU_RS01585 at 354.893 kb on - strand, within PFLU_RS01585 at 355.053 kb on + strand, within PFLU_RS01585 at 355.053 kb on + strand, within PFLU_RS01585 at 355.053 kb on + strand, within PFLU_RS01585 at 355.053 kb on + strand, within PFLU_RS01585 at 355.054 kb on - strand at 355.054 kb on - strand at 355.054 kb on - strand at 355.066 kb on + strand at 355.067 kb on - strand at 355.067 kb on - strand at 355.102 kb on + strand at 355.102 kb on + strand at 355.102 kb on + strand at 355.102 kb on + strand at 355.102 kb on + strand at 355.102 kb on + strand at 355.103 kb on - strand at 355.103 kb on - strand at 355.103 kb on - strand at 355.173 kb on + strand at 355.173 kb on + strand at 355.174 kb on - strand at 355.174 kb on - strand at 355.175 kb on + strand at 355.175 kb on + strand at 355.175 kb on + strand at 355.175 kb on + strand at 355.176 kb on - strand at 355.176 kb on - strand at 355.176 kb on - strand at 355.176 kb on - strand at 355.607 kb on + strand, within PFLU_RS01590 at 355.607 kb on + strand, within PFLU_RS01590 at 355.607 kb on + strand, within PFLU_RS01590 at 355.607 kb on + strand, within PFLU_RS01590 at 355.608 kb on - strand, within PFLU_RS01590 at 355.701 kb on + strand, within PFLU_RS01590 at 355.847 kb on + strand, within PFLU_RS01590 at 355.898 kb on + strand, within PFLU_RS01590 at 355.898 kb on + strand, within PFLU_RS01590 at 355.898 kb on + strand, within PFLU_RS01590 at 355.898 kb on + strand, within PFLU_RS01590 at 355.898 kb on + strand, within PFLU_RS01590 at 355.898 kb on + strand, within PFLU_RS01590 at 355.898 kb on + strand, within PFLU_RS01590 at 355.898 kb on + strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.899 kb on - strand, within PFLU_RS01590 at 355.901 kb on + strand, within PFLU_RS01590 at 355.902 kb on - strand, within PFLU_RS01590 at 355.994 kb on + strand, within PFLU_RS01590 at 355.994 kb on + strand, within PFLU_RS01590 at 355.995 kb on - strand, within PFLU_RS01590 at 355.995 kb on - strand, within PFLU_RS01590 at 355.995 kb on - strand, within PFLU_RS01590 at 355.995 kb on - strand, within PFLU_RS01590 at 355.995 kb on - strand, within PFLU_RS01590 at 355.995 kb on - strand, within PFLU_RS01590
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 353,812 + +0.8 353,812 + -1.2 353,812 + -0.2 353,812 + +2.7 353,812 + +0.0 353,812 + +1.8 353,813 - +1.0 353,813 - -0.1 353,813 - -2.1 353,813 - +1.9 353,813 - -2.1 353,900 + +1.3 353,900 + -0.4 353,901 - +1.2 353,939 - -0.6 353,939 - -0.8 353,958 - -0.5 353,958 - -2.1 354,029 - +0.9 354,040 - -0.0 354,048 + PFLU_RS01575 0.11 -2.6 354,049 - PFLU_RS01575 0.11 +1.7 354,063 + PFLU_RS01575 0.14 -2.5 354,063 + PFLU_RS01575 0.14 -1.7 354,063 + PFLU_RS01575 0.14 +0.8 354,063 + PFLU_RS01575 0.14 +0.2 354,064 - PFLU_RS01575 0.14 -0.7 354,064 - PFLU_RS01575 0.14 +1.8 354,064 - PFLU_RS01575 0.14 -0.7 354,064 - PFLU_RS01575 0.14 +1.4 354,064 - PFLU_RS01575 0.14 +0.3 354,064 - PFLU_RS01575 0.14 +0.9 354,064 - PFLU_RS01575 0.14 +0.6 354,148 + PFLU_RS01575 0.29 +1.6 354,148 + PFLU_RS01575 0.29 -0.6 354,149 - PFLU_RS01575 0.29 -1.0 354,149 - PFLU_RS01575 0.29 +0.7 354,149 - PFLU_RS01575 0.29 -0.8 354,149 - PFLU_RS01575 0.29 -1.2 354,206 + PFLU_RS01575 0.39 -1.1 354,206 + PFLU_RS01575 0.39 +0.5 354,206 + PFLU_RS01575 0.39 -1.0 354,206 + PFLU_RS01575 0.39 +1.0 354,207 - PFLU_RS01575 0.40 +0.0 354,312 + PFLU_RS01575 0.58 -1.0 354,312 + PFLU_RS01575 0.58 +0.8 354,313 - PFLU_RS01575 0.59 -2.0 354,328 + PFLU_RS01575 0.61 -1.6 354,344 - PFLU_RS01575 0.64 +1.2 354,397 + PFLU_RS01575 0.74 -0.9 354,397 + PFLU_RS01575 0.74 +0.5 354,397 + PFLU_RS01575 0.74 -1.0 354,398 - PFLU_RS01575 0.74 -0.9 354,398 - PFLU_RS01575 0.74 +1.8 354,398 - PFLU_RS01575 0.74 -0.5 354,398 - PFLU_RS01575 0.74 -1.5 354,400 + PFLU_RS01575 0.74 -0.9 354,400 + PFLU_RS01575 0.74 -1.8 354,400 + PFLU_RS01575 0.74 -0.0 354,400 + PFLU_RS01575 0.74 -0.5 354,400 + PFLU_RS01575 0.74 -3.7 354,401 - PFLU_RS01575 0.74 -0.0 354,401 - PFLU_RS01575 0.74 -0.2 354,401 - PFLU_RS01575 0.74 +0.5 354,401 - PFLU_RS01575 0.74 +0.7 354,401 - PFLU_RS01575 0.74 -0.1 354,401 - PFLU_RS01575 0.74 +0.5 354,401 - PFLU_RS01575 0.74 -0.0 354,401 - PFLU_RS01575 0.74 -0.1 354,401 - PFLU_RS01575 0.74 -1.0 354,429 + PFLU_RS01575 0.79 +0.5 354,429 + PFLU_RS01575 0.79 +3.5 354,430 - PFLU_RS01575 0.80 +1.5 354,450 + PFLU_RS01575 0.83 +0.9 354,486 - PFLU_RS01575 0.90 -0.3 354,503 + -2.1 354,503 + -2.7 354,503 + -0.2 354,503 + +2.4 354,504 - +1.6 354,515 + -2.8 354,516 - +0.5 354,541 + +1.4 354,766 - -2.0 354,769 + -1.6 354,770 - -1.0 354,782 + -1.6 354,829 - +0.3 354,829 - +1.6 354,829 - -1.0 354,846 + PFLU_RS01585 0.14 -1.7 354,846 + PFLU_RS01585 0.14 -1.9 354,888 + PFLU_RS01585 0.29 +2.4 354,889 - PFLU_RS01585 0.29 -1.2 354,889 - PFLU_RS01585 0.29 -1.3 354,889 - PFLU_RS01585 0.29 -2.4 354,889 - PFLU_RS01585 0.29 -2.3 354,892 + PFLU_RS01585 0.30 -2.5 354,892 + PFLU_RS01585 0.30 +1.1 354,892 + PFLU_RS01585 0.30 -0.6 354,892 + PFLU_RS01585 0.30 -1.1 354,892 + PFLU_RS01585 0.30 -0.2 354,892 + PFLU_RS01585 0.30 -0.5 354,892 + PFLU_RS01585 0.30 -2.3 354,893 - PFLU_RS01585 0.31 -0.8 354,893 - PFLU_RS01585 0.31 -2.1 354,893 - PFLU_RS01585 0.31 -2.5 354,893 - PFLU_RS01585 0.31 -2.0 354,893 - PFLU_RS01585 0.31 -2.9 354,893 - PFLU_RS01585 0.31 +0.5 355,053 + PFLU_RS01585 0.89 -0.5 355,053 + PFLU_RS01585 0.89 -1.7 355,053 + PFLU_RS01585 0.89 -2.7 355,053 + PFLU_RS01585 0.89 -0.9 355,054 - -1.2 355,054 - -1.0 355,054 - +1.8 355,066 + +0.5 355,067 - +0.8 355,067 - +1.0 355,102 + -1.9 355,102 + +0.3 355,102 + -0.6 355,102 + +0.0 355,102 + +0.5 355,102 + +0.4 355,103 - +1.3 355,103 - +0.7 355,103 - -1.6 355,173 + +1.2 355,173 + -1.3 355,174 - +1.6 355,174 - -1.1 355,175 + -0.3 355,175 + -0.9 355,175 + +0.0 355,175 + -2.0 355,176 - +1.2 355,176 - -2.9 355,176 - +0.4 355,176 - +1.0 355,607 + PFLU_RS01590 0.50 -1.0 355,607 + PFLU_RS01590 0.50 -1.2 355,607 + PFLU_RS01590 0.50 -1.1 355,607 + PFLU_RS01590 0.50 +1.1 355,608 - PFLU_RS01590 0.50 +0.8 355,701 + PFLU_RS01590 0.58 +1.0 355,847 + PFLU_RS01590 0.72 -0.0 355,898 + PFLU_RS01590 0.77 -0.6 355,898 + PFLU_RS01590 0.77 -1.8 355,898 + PFLU_RS01590 0.77 +2.0 355,898 + PFLU_RS01590 0.77 -1.3 355,898 + PFLU_RS01590 0.77 -0.0 355,898 + PFLU_RS01590 0.77 -1.5 355,898 + PFLU_RS01590 0.77 +0.2 355,898 + PFLU_RS01590 0.77 +0.4 355,899 - PFLU_RS01590 0.77 -0.5 355,899 - PFLU_RS01590 0.77 +0.7 355,899 - PFLU_RS01590 0.77 -0.7 355,899 - PFLU_RS01590 0.77 -0.8 355,899 - PFLU_RS01590 0.77 +1.6 355,899 - PFLU_RS01590 0.77 +1.4 355,899 - PFLU_RS01590 0.77 +1.2 355,899 - PFLU_RS01590 0.77 +1.0 355,899 - PFLU_RS01590 0.77 -0.2 355,899 - PFLU_RS01590 0.77 -0.1 355,899 - PFLU_RS01590 0.77 +0.9 355,899 - PFLU_RS01590 0.77 +0.4 355,899 - PFLU_RS01590 0.77 -1.6 355,899 - PFLU_RS01590 0.77 +0.4 355,901 + PFLU_RS01590 0.77 -0.1 355,902 - PFLU_RS01590 0.77 -0.5 355,994 + PFLU_RS01590 0.86 +1.3 355,994 + PFLU_RS01590 0.86 +0.1 355,995 - PFLU_RS01590 0.86 -3.1 355,995 - PFLU_RS01590 0.86 +1.8 355,995 - PFLU_RS01590 0.86 +1.2 355,995 - PFLU_RS01590 0.86 -1.7 355,995 - PFLU_RS01590 0.86 +0.6 355,995 - PFLU_RS01590 0.86 +0.2
Or see this region's nucleotide sequence