Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01370 and PFLU_RS01375 are separated by 132 nucleotides PFLU_RS01375 and PFLU_RS01380 are separated by 45 nucleotides PFLU_RS01380 and PFLU_RS01385 are separated by 87 nucleotides
PFLU_RS01370: PFLU_RS01370 - LysR family transcriptional regulator, at 305,635 to 306,522
_RS01370
PFLU_RS01375: PFLU_RS01375 - peptidoglycan-binding protein LysM, at 306,655 to 307,095
_RS01375
PFLU_RS01380: PFLU_RS01380 - GMP/IMP nucleotidase, at 307,141 to 307,803
_RS01380
PFLU_RS01385: PFLU_RS01385 - ADP compounds hydrolase NudE, at 307,891 to 308,457
_RS01385
Position (kb) 306
307
308 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 305.839 kb on + strand, within PFLU_RS01370 at 305.839 kb on + strand, within PFLU_RS01370 at 305.839 kb on + strand, within PFLU_RS01370 at 305.840 kb on - strand, within PFLU_RS01370 at 305.840 kb on - strand, within PFLU_RS01370 at 305.866 kb on + strand, within PFLU_RS01370 at 305.867 kb on - strand, within PFLU_RS01370 at 305.867 kb on - strand, within PFLU_RS01370 at 306.017 kb on + strand, within PFLU_RS01370 at 306.017 kb on + strand, within PFLU_RS01370 at 306.086 kb on + strand, within PFLU_RS01370 at 306.199 kb on + strand, within PFLU_RS01370 at 306.200 kb on - strand, within PFLU_RS01370 at 306.249 kb on + strand, within PFLU_RS01370 at 306.249 kb on + strand, within PFLU_RS01370 at 306.249 kb on + strand, within PFLU_RS01370 at 306.249 kb on + strand, within PFLU_RS01370 at 306.250 kb on - strand, within PFLU_RS01370 at 306.250 kb on - strand, within PFLU_RS01370 at 306.299 kb on + strand, within PFLU_RS01370 at 306.300 kb on - strand, within PFLU_RS01370 at 306.300 kb on - strand, within PFLU_RS01370 at 306.300 kb on - strand, within PFLU_RS01370 at 306.331 kb on + strand, within PFLU_RS01370 at 306.444 kb on + strand at 306.444 kb on + strand at 306.445 kb on - strand at 306.445 kb on - strand at 306.445 kb on - strand at 306.561 kb on - strand at 306.561 kb on - strand at 306.561 kb on - strand at 306.612 kb on + strand at 306.613 kb on - strand at 306.613 kb on - strand at 306.613 kb on - strand at 306.613 kb on - strand at 306.663 kb on + strand at 306.663 kb on + strand at 306.663 kb on + strand at 306.664 kb on - strand at 306.664 kb on - strand at 306.664 kb on - strand at 306.666 kb on + strand at 306.666 kb on + strand at 306.666 kb on + strand at 306.666 kb on + strand at 306.666 kb on + strand at 306.666 kb on + strand at 306.666 kb on + strand at 306.666 kb on + strand at 306.667 kb on - strand at 306.667 kb on - strand at 306.667 kb on - strand at 306.667 kb on - strand at 306.667 kb on - strand at 306.667 kb on - strand at 306.672 kb on + strand at 306.672 kb on + strand at 306.675 kb on + strand at 306.809 kb on + strand, within PFLU_RS01375 at 306.809 kb on + strand, within PFLU_RS01375 at 306.810 kb on - strand, within PFLU_RS01375 at 306.926 kb on + strand, within PFLU_RS01375 at 306.991 kb on + strand, within PFLU_RS01375 at 306.991 kb on + strand, within PFLU_RS01375 at 306.991 kb on + strand, within PFLU_RS01375 at 306.991 kb on + strand, within PFLU_RS01375 at 306.991 kb on + strand, within PFLU_RS01375 at 306.992 kb on - strand, within PFLU_RS01375 at 307.009 kb on + strand, within PFLU_RS01375 at 307.009 kb on + strand, within PFLU_RS01375 at 307.009 kb on + strand, within PFLU_RS01375 at 307.010 kb on - strand, within PFLU_RS01375 at 307.010 kb on - strand, within PFLU_RS01375 at 307.063 kb on + strand at 307.063 kb on + strand at 307.064 kb on - strand at 307.084 kb on - strand at 307.093 kb on + strand at 307.094 kb on - strand at 307.166 kb on + strand at 307.167 kb on - strand at 307.320 kb on + strand, within PFLU_RS01380 at 307.320 kb on + strand, within PFLU_RS01380 at 307.320 kb on + strand, within PFLU_RS01380 at 307.320 kb on + strand, within PFLU_RS01380 at 307.321 kb on - strand, within PFLU_RS01380 at 307.321 kb on - strand, within PFLU_RS01380 at 307.373 kb on + strand, within PFLU_RS01380 at 307.403 kb on + strand, within PFLU_RS01380 at 307.404 kb on - strand, within PFLU_RS01380 at 307.404 kb on - strand, within PFLU_RS01380 at 307.564 kb on + strand, within PFLU_RS01380 at 307.565 kb on - strand, within PFLU_RS01380 at 307.573 kb on - strand, within PFLU_RS01380 at 307.604 kb on + strand, within PFLU_RS01380 at 307.604 kb on + strand, within PFLU_RS01380 at 307.605 kb on - strand, within PFLU_RS01380 at 307.605 kb on - strand, within PFLU_RS01380 at 307.818 kb on + strand at 307.818 kb on + strand at 307.818 kb on + strand at 307.818 kb on + strand at 307.819 kb on - strand at 307.819 kb on - strand at 307.819 kb on - strand at 307.819 kb on - strand at 307.819 kb on - strand at 307.819 kb on - strand at 307.819 kb on - strand at 307.819 kb on - strand at 307.819 kb on - strand at 307.819 kb on - strand at 307.822 kb on + strand at 307.822 kb on + strand at 307.822 kb on + strand at 307.822 kb on + strand at 307.822 kb on + strand at 307.822 kb on + strand at 307.822 kb on + strand at 307.822 kb on + strand at 307.823 kb on - strand at 307.823 kb on - strand at 307.823 kb on - strand at 307.823 kb on - strand at 307.859 kb on + strand at 307.859 kb on + strand at 307.859 kb on + strand at 307.859 kb on + strand at 307.859 kb on + strand at 307.859 kb on + strand at 307.860 kb on - strand at 307.860 kb on - strand at 307.860 kb on - strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.861 kb on + strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.864 kb on + strand at 307.864 kb on + strand at 307.865 kb on - strand at 307.890 kb on + strand at 307.890 kb on + strand at 307.891 kb on - strand at 307.891 kb on - strand at 307.891 kb on - strand at 307.925 kb on + strand at 307.925 kb on + strand at 307.936 kb on - strand at 307.996 kb on + strand, within PFLU_RS01385 at 307.996 kb on + strand, within PFLU_RS01385 at 307.996 kb on + strand, within PFLU_RS01385 at 307.996 kb on + strand, within PFLU_RS01385 at 307.996 kb on + strand, within PFLU_RS01385 at 307.997 kb on - strand, within PFLU_RS01385 at 307.997 kb on - strand, within PFLU_RS01385 at 307.997 kb on - strand, within PFLU_RS01385 at 308.086 kb on + strand, within PFLU_RS01385 at 308.086 kb on + strand, within PFLU_RS01385 at 308.087 kb on - strand, within PFLU_RS01385 at 308.087 kb on - strand, within PFLU_RS01385 at 308.087 kb on - strand, within PFLU_RS01385 at 308.087 kb on - strand, within PFLU_RS01385 at 308.087 kb on - strand, within PFLU_RS01385
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 305,839 + PFLU_RS01370 0.23 +0.9 305,839 + PFLU_RS01370 0.23 +0.8 305,839 + PFLU_RS01370 0.23 +0.4 305,840 - PFLU_RS01370 0.23 +2.3 305,840 - PFLU_RS01370 0.23 +2.1 305,866 + PFLU_RS01370 0.26 +0.2 305,867 - PFLU_RS01370 0.26 -1.9 305,867 - PFLU_RS01370 0.26 +0.0 306,017 + PFLU_RS01370 0.43 -0.7 306,017 + PFLU_RS01370 0.43 -0.4 306,086 + PFLU_RS01370 0.51 +0.7 306,199 + PFLU_RS01370 0.64 +1.7 306,200 - PFLU_RS01370 0.64 +0.8 306,249 + PFLU_RS01370 0.69 +1.7 306,249 + PFLU_RS01370 0.69 +2.2 306,249 + PFLU_RS01370 0.69 +1.9 306,249 + PFLU_RS01370 0.69 +1.8 306,250 - PFLU_RS01370 0.69 -2.2 306,250 - PFLU_RS01370 0.69 +1.6 306,299 + PFLU_RS01370 0.75 -2.2 306,300 - PFLU_RS01370 0.75 +2.9 306,300 - PFLU_RS01370 0.75 +0.8 306,300 - PFLU_RS01370 0.75 +0.5 306,331 + PFLU_RS01370 0.78 +0.2 306,444 + -0.4 306,444 + -1.9 306,445 - +0.3 306,445 - +0.6 306,445 - -3.3 306,561 - -0.6 306,561 - +2.2 306,561 - +0.5 306,612 + -0.4 306,613 - -0.5 306,613 - +0.8 306,613 - -0.5 306,613 - +0.7 306,663 + -2.6 306,663 + +1.3 306,663 + -2.2 306,664 - -1.4 306,664 - +0.9 306,664 - +0.0 306,666 + -0.9 306,666 + -0.5 306,666 + -3.2 306,666 + +3.6 306,666 + +0.1 306,666 + +0.1 306,666 + +1.6 306,666 + -0.9 306,667 - +1.3 306,667 - -2.7 306,667 - +0.6 306,667 - +0.8 306,667 - +1.2 306,667 - +1.0 306,672 + -1.0 306,672 + -1.8 306,675 + +0.5 306,809 + PFLU_RS01375 0.35 +0.6 306,809 + PFLU_RS01375 0.35 +0.5 306,810 - PFLU_RS01375 0.35 -1.0 306,926 + PFLU_RS01375 0.61 +1.4 306,991 + PFLU_RS01375 0.76 -0.5 306,991 + PFLU_RS01375 0.76 -2.5 306,991 + PFLU_RS01375 0.76 -0.8 306,991 + PFLU_RS01375 0.76 -1.8 306,991 + PFLU_RS01375 0.76 -0.0 306,992 - PFLU_RS01375 0.76 +0.0 307,009 + PFLU_RS01375 0.80 +0.3 307,009 + PFLU_RS01375 0.80 -1.8 307,009 + PFLU_RS01375 0.80 -1.1 307,010 - PFLU_RS01375 0.80 +0.9 307,010 - PFLU_RS01375 0.80 +1.4 307,063 + -0.1 307,063 + +0.8 307,064 - -0.7 307,084 - -1.1 307,093 + -0.6 307,094 - +0.9 307,166 + -0.8 307,167 - +0.1 307,320 + PFLU_RS01380 0.27 -2.6 307,320 + PFLU_RS01380 0.27 +2.1 307,320 + PFLU_RS01380 0.27 -3.3 307,320 + PFLU_RS01380 0.27 -2.7 307,321 - PFLU_RS01380 0.27 -0.2 307,321 - PFLU_RS01380 0.27 +0.1 307,373 + PFLU_RS01380 0.35 -0.4 307,403 + PFLU_RS01380 0.40 +0.2 307,404 - PFLU_RS01380 0.40 -0.5 307,404 - PFLU_RS01380 0.40 +0.3 307,564 + PFLU_RS01380 0.64 -2.9 307,565 - PFLU_RS01380 0.64 -0.0 307,573 - PFLU_RS01380 0.65 -0.7 307,604 + PFLU_RS01380 0.70 -2.2 307,604 + PFLU_RS01380 0.70 -1.0 307,605 - PFLU_RS01380 0.70 -0.7 307,605 - PFLU_RS01380 0.70 -0.5 307,818 + -2.2 307,818 + -0.5 307,818 + -2.3 307,818 + -1.8 307,819 - +0.4 307,819 - +1.4 307,819 - +0.9 307,819 - +0.2 307,819 - -0.9 307,819 - +1.2 307,819 - +2.0 307,819 - -0.3 307,819 - +0.2 307,819 - -0.7 307,822 + -2.1 307,822 + -2.7 307,822 + -3.1 307,822 + -3.4 307,822 + -2.2 307,822 + -0.9 307,822 + -1.7 307,822 + +0.3 307,823 - +0.3 307,823 - -0.3 307,823 - +1.1 307,823 - +0.4 307,859 + +0.8 307,859 + +1.9 307,859 + +0.6 307,859 + +0.4 307,859 + -0.7 307,859 + +1.1 307,860 - -1.6 307,860 - +1.1 307,860 - -1.2 307,861 + -1.7 307,861 + -0.6 307,861 + +0.6 307,861 + -1.6 307,861 + -1.0 307,861 + +1.0 307,861 + +0.3 307,861 + +0.0 307,861 + -1.3 307,861 + -2.4 307,861 + +1.1 307,861 + -0.1 307,861 + -0.3 307,861 + +1.4 307,861 + -0.7 307,862 - -0.9 307,862 - +1.9 307,862 - +1.2 307,862 - -0.0 307,862 - +2.1 307,862 - -0.0 307,862 - -0.4 307,862 - +2.9 307,862 - -1.1 307,862 - +0.5 307,862 - +0.4 307,862 - -0.2 307,862 - -0.0 307,862 - +0.0 307,862 - -0.3 307,864 + -2.7 307,864 + +0.3 307,865 - -2.6 307,890 + +0.4 307,890 + +0.3 307,891 - +0.1 307,891 - +1.7 307,891 - -1.1 307,925 + -1.0 307,925 + -0.3 307,936 - -0.4 307,996 + PFLU_RS01385 0.19 -2.0 307,996 + PFLU_RS01385 0.19 -1.9 307,996 + PFLU_RS01385 0.19 -2.6 307,996 + PFLU_RS01385 0.19 -3.1 307,996 + PFLU_RS01385 0.19 +0.6 307,997 - PFLU_RS01385 0.19 +1.2 307,997 - PFLU_RS01385 0.19 -0.1 307,997 - PFLU_RS01385 0.19 -2.5 308,086 + PFLU_RS01385 0.34 +0.3 308,086 + PFLU_RS01385 0.34 -2.2 308,087 - PFLU_RS01385 0.35 +3.6 308,087 - PFLU_RS01385 0.35 -0.7 308,087 - PFLU_RS01385 0.35 -0.0 308,087 - PFLU_RS01385 0.35 -1.3 308,087 - PFLU_RS01385 0.35 +1.0
Or see this region's nucleotide sequence