Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00460 and PFLU_RS00465 are separated by 98 nucleotides PFLU_RS00465 and PFLU_RS00470 are separated by 92 nucleotides PFLU_RS00470 and PFLU_RS00475 overlap by 4 nucleotides
PFLU_RS00460: PFLU_RS00460 - glutamate/aspartate:proton symporter GltP, at 93,000 to 94,331
_RS00460
PFLU_RS00465: PFLU_RS00465 - spore maturation protein, at 94,430 to 95,659
_RS00465
PFLU_RS00470: PFLU_RS00470 - hypothetical protein, at 95,752 to 96,363
_RS00470
PFLU_RS00475: PFLU_RS00475 - MCE family protein, at 96,360 to 97,298
_RS00475
Position (kb) 94
95
96 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 93.500 kb on - strand, within PFLU_RS00460 at 93.612 kb on + strand, within PFLU_RS00460 at 93.612 kb on + strand, within PFLU_RS00460 at 93.612 kb on + strand, within PFLU_RS00460 at 93.612 kb on + strand, within PFLU_RS00460 at 93.612 kb on + strand, within PFLU_RS00460 at 93.613 kb on - strand, within PFLU_RS00460 at 93.613 kb on - strand, within PFLU_RS00460 at 93.613 kb on - strand, within PFLU_RS00460 at 93.628 kb on + strand, within PFLU_RS00460 at 93.708 kb on + strand, within PFLU_RS00460 at 93.708 kb on + strand, within PFLU_RS00460 at 93.709 kb on - strand, within PFLU_RS00460 at 93.709 kb on - strand, within PFLU_RS00460 at 93.709 kb on - strand, within PFLU_RS00460 at 93.812 kb on - strand, within PFLU_RS00460 at 93.819 kb on + strand, within PFLU_RS00460 at 93.877 kb on - strand, within PFLU_RS00460 at 93.951 kb on + strand, within PFLU_RS00460 at 93.951 kb on + strand, within PFLU_RS00460 at 93.952 kb on - strand, within PFLU_RS00460 at 93.987 kb on + strand, within PFLU_RS00460 at 93.988 kb on - strand, within PFLU_RS00460 at 93.988 kb on - strand, within PFLU_RS00460 at 94.176 kb on - strand, within PFLU_RS00460 at 94.176 kb on - strand, within PFLU_RS00460 at 94.189 kb on + strand, within PFLU_RS00460 at 94.189 kb on + strand, within PFLU_RS00460 at 94.189 kb on + strand, within PFLU_RS00460 at 94.189 kb on + strand, within PFLU_RS00460 at 94.189 kb on + strand, within PFLU_RS00460 at 94.190 kb on - strand, within PFLU_RS00460 at 94.239 kb on + strand at 94.239 kb on + strand at 94.239 kb on + strand at 94.239 kb on + strand at 94.239 kb on + strand at 94.239 kb on + strand at 94.239 kb on + strand at 94.239 kb on + strand at 94.239 kb on + strand at 94.239 kb on + strand at 94.239 kb on + strand at 94.240 kb on - strand at 94.240 kb on - strand at 94.240 kb on - strand at 94.240 kb on - strand at 94.240 kb on - strand at 94.240 kb on - strand at 94.240 kb on - strand at 94.240 kb on - strand at 94.240 kb on - strand at 94.240 kb on - strand at 94.240 kb on - strand at 94.240 kb on - strand at 94.240 kb on - strand at 94.264 kb on - strand at 94.333 kb on - strand at 94.333 kb on - strand at 94.335 kb on + strand at 94.335 kb on + strand at 94.335 kb on + strand at 94.336 kb on - strand at 94.336 kb on - strand at 94.336 kb on - strand at 94.424 kb on + strand at 94.425 kb on - strand at 94.425 kb on - strand at 94.425 kb on - strand at 94.599 kb on + strand, within PFLU_RS00465 at 94.907 kb on + strand, within PFLU_RS00465 at 94.907 kb on + strand, within PFLU_RS00465 at 94.907 kb on + strand, within PFLU_RS00465 at 94.907 kb on + strand, within PFLU_RS00465 at 94.907 kb on + strand, within PFLU_RS00465 at 94.907 kb on + strand, within PFLU_RS00465 at 94.908 kb on - strand, within PFLU_RS00465 at 94.908 kb on - strand, within PFLU_RS00465 at 94.908 kb on - strand, within PFLU_RS00465 at 94.908 kb on - strand, within PFLU_RS00465 at 94.908 kb on - strand, within PFLU_RS00465 at 95.048 kb on + strand, within PFLU_RS00465 at 95.049 kb on - strand, within PFLU_RS00465 at 95.210 kb on + strand, within PFLU_RS00465 at 95.210 kb on + strand, within PFLU_RS00465 at 95.210 kb on + strand, within PFLU_RS00465 at 95.210 kb on + strand, within PFLU_RS00465 at 95.210 kb on + strand, within PFLU_RS00465 at 95.210 kb on + strand, within PFLU_RS00465 at 95.210 kb on + strand, within PFLU_RS00465 at 95.210 kb on + strand, within PFLU_RS00465 at 95.211 kb on - strand, within PFLU_RS00465 at 95.211 kb on - strand, within PFLU_RS00465 at 95.211 kb on - strand, within PFLU_RS00465 at 95.211 kb on - strand, within PFLU_RS00465 at 95.211 kb on - strand, within PFLU_RS00465 at 95.270 kb on + strand, within PFLU_RS00465 at 95.271 kb on - strand, within PFLU_RS00465 at 95.271 kb on - strand, within PFLU_RS00465 at 95.531 kb on + strand, within PFLU_RS00465 at 95.531 kb on + strand, within PFLU_RS00465 at 95.531 kb on + strand, within PFLU_RS00465 at 95.531 kb on + strand, within PFLU_RS00465 at 95.531 kb on + strand, within PFLU_RS00465 at 95.531 kb on + strand, within PFLU_RS00465 at 95.531 kb on + strand, within PFLU_RS00465 at 95.531 kb on + strand, within PFLU_RS00465 at 95.532 kb on - strand, within PFLU_RS00465 at 95.532 kb on - strand, within PFLU_RS00465 at 95.532 kb on - strand, within PFLU_RS00465 at 95.532 kb on - strand, within PFLU_RS00465 at 95.532 kb on - strand, within PFLU_RS00465 at 95.532 kb on - strand, within PFLU_RS00465 at 95.532 kb on - strand, within PFLU_RS00465 at 95.532 kb on - strand, within PFLU_RS00465 at 95.532 kb on - strand, within PFLU_RS00465 at 95.532 kb on - strand, within PFLU_RS00465 at 95.546 kb on + strand at 95.546 kb on + strand at 95.546 kb on + strand at 95.546 kb on + strand at 95.547 kb on - strand at 95.547 kb on - strand at 95.547 kb on - strand at 95.642 kb on + strand at 95.642 kb on + strand at 95.643 kb on - strand at 95.643 kb on - strand at 95.760 kb on + strand at 95.760 kb on + strand at 95.760 kb on + strand at 95.761 kb on - strand at 95.805 kb on + strand at 95.806 kb on - strand at 96.011 kb on + strand, within PFLU_RS00470 at 96.011 kb on + strand, within PFLU_RS00470 at 96.011 kb on + strand, within PFLU_RS00470 at 96.012 kb on - strand, within PFLU_RS00470 at 96.012 kb on - strand, within PFLU_RS00470 at 96.039 kb on + strand, within PFLU_RS00470 at 96.040 kb on - strand, within PFLU_RS00470 at 96.134 kb on + strand, within PFLU_RS00470 at 96.134 kb on + strand, within PFLU_RS00470 at 96.134 kb on + strand, within PFLU_RS00470 at 96.134 kb on + strand, within PFLU_RS00470 at 96.134 kb on + strand, within PFLU_RS00470 at 96.134 kb on + strand, within PFLU_RS00470 at 96.134 kb on + strand, within PFLU_RS00470 at 96.134 kb on + strand, within PFLU_RS00470 at 96.134 kb on + strand, within PFLU_RS00470 at 96.134 kb on + strand, within PFLU_RS00470 at 96.135 kb on - strand, within PFLU_RS00470 at 96.135 kb on - strand, within PFLU_RS00470 at 96.135 kb on - strand, within PFLU_RS00470 at 96.135 kb on - strand, within PFLU_RS00470 at 96.171 kb on + strand, within PFLU_RS00470 at 96.172 kb on - strand, within PFLU_RS00470 at 96.172 kb on - strand, within PFLU_RS00470 at 96.172 kb on - strand, within PFLU_RS00470 at 96.172 kb on - strand, within PFLU_RS00470 at 96.172 kb on - strand, within PFLU_RS00470 at 96.172 kb on - strand, within PFLU_RS00470 at 96.208 kb on - strand, within PFLU_RS00470 at 96.208 kb on - strand, within PFLU_RS00470 at 96.272 kb on + strand, within PFLU_RS00470 at 96.272 kb on + strand, within PFLU_RS00470 at 96.273 kb on - strand, within PFLU_RS00470 at 96.273 kb on - strand, within PFLU_RS00470 at 96.273 kb on - strand, within PFLU_RS00470 at 96.273 kb on - strand, within PFLU_RS00470
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 93,500 - PFLU_RS00460 0.38 +4.8 93,612 + PFLU_RS00460 0.46 +4.6 93,612 + PFLU_RS00460 0.46 +3.4 93,612 + PFLU_RS00460 0.46 +2.3 93,612 + PFLU_RS00460 0.46 +3.4 93,612 + PFLU_RS00460 0.46 +5.0 93,613 - PFLU_RS00460 0.46 +4.7 93,613 - PFLU_RS00460 0.46 +3.6 93,613 - PFLU_RS00460 0.46 +4.2 93,628 + PFLU_RS00460 0.47 +3.3 93,708 + PFLU_RS00460 0.53 +5.4 93,708 + PFLU_RS00460 0.53 +4.7 93,709 - PFLU_RS00460 0.53 +3.6 93,709 - PFLU_RS00460 0.53 +2.4 93,709 - PFLU_RS00460 0.53 +3.0 93,812 - PFLU_RS00460 0.61 +4.5 93,819 + PFLU_RS00460 0.61 +2.9 93,877 - PFLU_RS00460 0.66 +3.5 93,951 + PFLU_RS00460 0.71 +3.8 93,951 + PFLU_RS00460 0.71 +4.1 93,952 - PFLU_RS00460 0.71 +1.6 93,987 + PFLU_RS00460 0.74 +3.9 93,988 - PFLU_RS00460 0.74 +3.5 93,988 - PFLU_RS00460 0.74 +4.1 94,176 - PFLU_RS00460 0.88 +4.2 94,176 - PFLU_RS00460 0.88 +7.2 94,189 + PFLU_RS00460 0.89 +3.7 94,189 + PFLU_RS00460 0.89 +2.4 94,189 + PFLU_RS00460 0.89 +3.7 94,189 + PFLU_RS00460 0.89 +2.8 94,189 + PFLU_RS00460 0.89 +0.4 94,190 - PFLU_RS00460 0.89 +4.8 94,239 + +3.3 94,239 + -0.6 94,239 + +0.8 94,239 + +3.5 94,239 + +1.9 94,239 + +2.9 94,239 + +0.8 94,239 + +3.1 94,239 + -0.2 94,239 + +1.7 94,239 + -0.4 94,240 - +4.2 94,240 - +3.1 94,240 - +4.8 94,240 - +4.7 94,240 - +3.7 94,240 - +3.5 94,240 - +2.7 94,240 - +3.3 94,240 - +3.8 94,240 - +2.4 94,240 - +3.7 94,240 - +4.5 94,240 - +3.9 94,264 - +4.0 94,333 - +3.8 94,333 - +3.1 94,335 + -1.0 94,335 + -0.9 94,335 + +1.9 94,336 - +4.8 94,336 - +3.8 94,336 - +4.4 94,424 + -2.5 94,425 - +1.6 94,425 - +0.8 94,425 - +1.9 94,599 + PFLU_RS00465 0.14 -2.5 94,907 + PFLU_RS00465 0.39 -3.9 94,907 + PFLU_RS00465 0.39 -3.8 94,907 + PFLU_RS00465 0.39 -3.3 94,907 + PFLU_RS00465 0.39 -0.9 94,907 + PFLU_RS00465 0.39 -2.9 94,907 + PFLU_RS00465 0.39 -2.3 94,908 - PFLU_RS00465 0.39 -2.3 94,908 - PFLU_RS00465 0.39 +2.2 94,908 - PFLU_RS00465 0.39 -2.5 94,908 - PFLU_RS00465 0.39 -0.5 94,908 - PFLU_RS00465 0.39 -1.2 95,048 + PFLU_RS00465 0.50 -3.8 95,049 - PFLU_RS00465 0.50 -0.0 95,210 + PFLU_RS00465 0.63 -2.9 95,210 + PFLU_RS00465 0.63 -1.6 95,210 + PFLU_RS00465 0.63 -3.0 95,210 + PFLU_RS00465 0.63 -2.1 95,210 + PFLU_RS00465 0.63 -2.1 95,210 + PFLU_RS00465 0.63 -2.8 95,210 + PFLU_RS00465 0.63 -4.1 95,210 + PFLU_RS00465 0.63 -2.8 95,211 - PFLU_RS00465 0.63 -0.6 95,211 - PFLU_RS00465 0.63 -1.1 95,211 - PFLU_RS00465 0.63 -0.9 95,211 - PFLU_RS00465 0.63 -3.9 95,211 - PFLU_RS00465 0.63 +0.6 95,270 + PFLU_RS00465 0.68 +0.1 95,271 - PFLU_RS00465 0.68 -2.2 95,271 - PFLU_RS00465 0.68 -4.6 95,531 + PFLU_RS00465 0.90 -4.0 95,531 + PFLU_RS00465 0.90 -3.0 95,531 + PFLU_RS00465 0.90 -2.7 95,531 + PFLU_RS00465 0.90 -1.3 95,531 + PFLU_RS00465 0.90 -3.8 95,531 + PFLU_RS00465 0.90 -1.8 95,531 + PFLU_RS00465 0.90 -1.5 95,531 + PFLU_RS00465 0.90 -0.9 95,532 - PFLU_RS00465 0.90 -1.7 95,532 - PFLU_RS00465 0.90 -0.8 95,532 - PFLU_RS00465 0.90 -2.5 95,532 - PFLU_RS00465 0.90 -2.4 95,532 - PFLU_RS00465 0.90 -1.4 95,532 - PFLU_RS00465 0.90 +1.0 95,532 - PFLU_RS00465 0.90 -2.3 95,532 - PFLU_RS00465 0.90 -0.7 95,532 - PFLU_RS00465 0.90 -2.8 95,532 - PFLU_RS00465 0.90 +0.0 95,546 + -3.6 95,546 + -3.4 95,546 + -2.1 95,546 + -3.2 95,547 - +1.3 95,547 - -2.5 95,547 - -1.5 95,642 + -3.6 95,642 + -3.6 95,643 - +0.3 95,643 - -1.2 95,760 + -0.8 95,760 + -3.2 95,760 + +0.4 95,761 - +1.3 95,805 + -0.9 95,806 - +1.5 96,011 + PFLU_RS00470 0.42 -0.7 96,011 + PFLU_RS00470 0.42 -0.6 96,011 + PFLU_RS00470 0.42 -0.5 96,012 - PFLU_RS00470 0.42 +1.2 96,012 - PFLU_RS00470 0.42 -0.4 96,039 + PFLU_RS00470 0.47 -1.5 96,040 - PFLU_RS00470 0.47 +1.0 96,134 + PFLU_RS00470 0.62 -2.6 96,134 + PFLU_RS00470 0.62 +0.6 96,134 + PFLU_RS00470 0.62 -1.3 96,134 + PFLU_RS00470 0.62 -0.6 96,134 + PFLU_RS00470 0.62 -1.9 96,134 + PFLU_RS00470 0.62 +3.4 96,134 + PFLU_RS00470 0.62 -2.1 96,134 + PFLU_RS00470 0.62 +1.0 96,134 + PFLU_RS00470 0.62 -1.0 96,134 + PFLU_RS00470 0.62 -1.0 96,135 - PFLU_RS00470 0.63 +1.8 96,135 - PFLU_RS00470 0.63 +3.4 96,135 - PFLU_RS00470 0.63 +0.4 96,135 - PFLU_RS00470 0.63 -3.1 96,171 + PFLU_RS00470 0.68 -1.0 96,172 - PFLU_RS00470 0.69 -1.5 96,172 - PFLU_RS00470 0.69 +0.1 96,172 - PFLU_RS00470 0.69 -0.3 96,172 - PFLU_RS00470 0.69 +3.0 96,172 - PFLU_RS00470 0.69 +1.5 96,172 - PFLU_RS00470 0.69 +2.4 96,208 - PFLU_RS00470 0.75 +1.4 96,208 - PFLU_RS00470 0.75 +3.6 96,272 + PFLU_RS00470 0.85 -1.7 96,272 + PFLU_RS00470 0.85 +0.4 96,273 - PFLU_RS00470 0.85 +1.0 96,273 - PFLU_RS00470 0.85 +0.7 96,273 - PFLU_RS00470 0.85 +0.6 96,273 - PFLU_RS00470 0.85 +0.9
Or see this region's nucleotide sequence