Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS00180

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00170 and PFLU_RS00175 are separated by 136 nucleotidesPFLU_RS00175 and PFLU_RS00180 overlap by 1 nucleotidesPFLU_RS00180 and PFLU_RS00185 are separated by 110 nucleotides PFLU_RS00170: PFLU_RS00170 - RcnB family protein, at 37,286 to 37,726 _RS00170 PFLU_RS00175: PFLU_RS00175 - tryptophan synthase subunit alpha, at 37,863 to 38,672 _RS00175 PFLU_RS00180: PFLU_RS00180 - tryptophan synthase subunit beta, at 38,672 to 39,898 _RS00180 PFLU_RS00185: PFLU_RS00185 - LysR family transcriptional regulator, at 40,009 to 40,905 _RS00185 Position (kb) 38 39 40Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 37.731 kb on + strandat 37.732 kb on - strandat 37.749 kb on + strandat 37.749 kb on + strandat 37.749 kb on + strandat 37.830 kb on + strandat 37.830 kb on + strandat 37.830 kb on + strandat 37.831 kb on - strandat 37.831 kb on - strandat 37.831 kb on - strandat 37.842 kb on + strandat 37.842 kb on + strandat 37.843 kb on - strandat 37.843 kb on - strandat 37.843 kb on - strandat 37.846 kb on + strandat 37.847 kb on - strandat 37.864 kb on + strandat 37.864 kb on + strandat 37.865 kb on - strandat 37.865 kb on - strandat 37.865 kb on - strandat 37.865 kb on - strandat 37.865 kb on - strandat 37.865 kb on - strandat 37.865 kb on - strandat 37.868 kb on + strandat 37.868 kb on + strandat 37.868 kb on + strandat 37.869 kb on - strandat 37.869 kb on - strandat 37.869 kb on - strandat 38.028 kb on - strand, within PFLU_RS00175at 38.063 kb on + strand, within PFLU_RS00175at 38.146 kb on + strand, within PFLU_RS00175at 38.146 kb on + strand, within PFLU_RS00175at 38.146 kb on + strand, within PFLU_RS00175at 38.146 kb on + strand, within PFLU_RS00175at 38.146 kb on + strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.147 kb on - strand, within PFLU_RS00175at 38.149 kb on + strand, within PFLU_RS00175at 38.149 kb on + strand, within PFLU_RS00175at 38.149 kb on + strand, within PFLU_RS00175at 38.149 kb on + strand, within PFLU_RS00175at 38.149 kb on + strand, within PFLU_RS00175at 38.149 kb on + strand, within PFLU_RS00175at 38.150 kb on - strand, within PFLU_RS00175at 38.150 kb on - strand, within PFLU_RS00175at 38.150 kb on - strand, within PFLU_RS00175at 38.150 kb on - strand, within PFLU_RS00175at 38.150 kb on - strand, within PFLU_RS00175at 38.337 kb on - strand, within PFLU_RS00175at 38.337 kb on - strand, within PFLU_RS00175at 38.337 kb on - strand, within PFLU_RS00175at 38.337 kb on - strand, within PFLU_RS00175at 38.337 kb on - strand, within PFLU_RS00175at 38.347 kb on + strand, within PFLU_RS00175at 38.347 kb on + strand, within PFLU_RS00175at 38.348 kb on - strand, within PFLU_RS00175at 38.348 kb on - strand, within PFLU_RS00175at 38.348 kb on - strand, within PFLU_RS00175at 38.348 kb on - strand, within PFLU_RS00175at 38.352 kb on - strand, within PFLU_RS00175at 38.368 kb on + strand, within PFLU_RS00175at 38.690 kb on - strandat 38.898 kb on + strand, within PFLU_RS00180at 38.898 kb on + strand, within PFLU_RS00180at 38.898 kb on + strand, within PFLU_RS00180at 38.899 kb on - strand, within PFLU_RS00180at 38.899 kb on - strand, within PFLU_RS00180at 38.899 kb on - strand, within PFLU_RS00180at 38.899 kb on - strand, within PFLU_RS00180at 38.972 kb on - strand, within PFLU_RS00180at 39.312 kb on + strand, within PFLU_RS00180at 39.313 kb on - strand, within PFLU_RS00180at 39.313 kb on - strand, within PFLU_RS00180at 39.313 kb on - strand, within PFLU_RS00180at 39.313 kb on - strand, within PFLU_RS00180at 39.471 kb on + strand, within PFLU_RS00180at 39.471 kb on + strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.472 kb on - strand, within PFLU_RS00180at 39.611 kb on - strand, within PFLU_RS00180at 39.611 kb on - strand, within PFLU_RS00180at 39.611 kb on - strand, within PFLU_RS00180at 39.649 kb on - strand, within PFLU_RS00180at 39.649 kb on - strand, within PFLU_RS00180at 39.694 kb on - strand, within PFLU_RS00180at 39.694 kb on - strand, within PFLU_RS00180at 39.694 kb on - strand, within PFLU_RS00180at 39.694 kb on - strand, within PFLU_RS00180at 39.718 kb on - strand, within PFLU_RS00180at 39.718 kb on - strand, within PFLU_RS00180at 39.718 kb on - strand, within PFLU_RS00180at 39.826 kb on - strandat 39.826 kb on - strandat 39.826 kb on - strandat 39.875 kb on + strandat 39.876 kb on - strandat 39.876 kb on - strandat 39.876 kb on - strandat 39.876 kb on - strandat 39.912 kb on + strandat 39.912 kb on + strandat 39.913 kb on - strandat 39.913 kb on - strandat 39.913 kb on - strandat 39.946 kb on + strandat 40.315 kb on - strand, within PFLU_RS00185at 40.315 kb on - strand, within PFLU_RS00185at 40.483 kb on + strand, within PFLU_RS00185at 40.483 kb on + strand, within PFLU_RS00185at 40.483 kb on + strand, within PFLU_RS00185at 40.483 kb on + strand, within PFLU_RS00185at 40.483 kb on + strand, within PFLU_RS00185at 40.483 kb on + strand, within PFLU_RS00185at 40.483 kb on + strand, within PFLU_RS00185at 40.483 kb on + strand, within PFLU_RS00185at 40.483 kb on + strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.484 kb on - strand, within PFLU_RS00185at 40.528 kb on + strand, within PFLU_RS00185at 40.586 kb on + strand, within PFLU_RS00185at 40.587 kb on - strand, within PFLU_RS00185at 40.687 kb on + strand, within PFLU_RS00185at 40.687 kb on + strand, within PFLU_RS00185at 40.687 kb on + strand, within PFLU_RS00185at 40.687 kb on + strand, within PFLU_RS00185at 40.687 kb on + strand, within PFLU_RS00185at 40.688 kb on - strand, within PFLU_RS00185at 40.688 kb on - strand, within PFLU_RS00185at 40.688 kb on - strand, within PFLU_RS00185at 40.688 kb on - strand, within PFLU_RS00185at 40.688 kb on - strand, within PFLU_RS00185at 40.690 kb on + strand, within PFLU_RS00185at 40.691 kb on - strand, within PFLU_RS00185at 40.691 kb on - strand, within PFLU_RS00185at 40.691 kb on - strand, within PFLU_RS00185at 40.775 kb on + strand, within PFLU_RS00185at 40.776 kb on - strand, within PFLU_RS00185

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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37,731 + -0.5
37,732 - -2.1
37,749 + +2.3
37,749 + +0.7
37,749 + +1.3
37,830 + +0.9
37,830 + -2.2
37,830 + -0.7
37,831 - -0.1
37,831 - +0.2
37,831 - +0.3
37,842 + +0.9
37,842 + -2.6
37,843 - +1.7
37,843 - -2.1
37,843 - +0.2
37,846 + +1.7
37,847 - -0.5
37,864 + +1.9
37,864 + +2.0
37,865 - +0.6
37,865 - -0.8
37,865 - -1.8
37,865 - -0.9
37,865 - +2.4
37,865 - +0.7
37,865 - -0.5
37,868 + -0.3
37,868 + -0.4
37,868 + +0.6
37,869 - -1.1
37,869 - +0.3
37,869 - -0.2
38,028 - PFLU_RS00175 0.20 -2.2
38,063 + PFLU_RS00175 0.25 +0.8
38,146 + PFLU_RS00175 0.35 +1.4
38,146 + PFLU_RS00175 0.35 +2.4
38,146 + PFLU_RS00175 0.35 +0.1
38,146 + PFLU_RS00175 0.35 +0.4
38,146 + PFLU_RS00175 0.35 +1.4
38,147 - PFLU_RS00175 0.35 -2.8
38,147 - PFLU_RS00175 0.35 -2.2
38,147 - PFLU_RS00175 0.35 -1.9
38,147 - PFLU_RS00175 0.35 +0.8
38,147 - PFLU_RS00175 0.35 -0.4
38,147 - PFLU_RS00175 0.35 -2.2
38,147 - PFLU_RS00175 0.35 -1.8
38,147 - PFLU_RS00175 0.35 -1.6
38,147 - PFLU_RS00175 0.35 +1.1
38,147 - PFLU_RS00175 0.35 +0.1
38,147 - PFLU_RS00175 0.35 -1.5
38,147 - PFLU_RS00175 0.35 -2.5
38,147 - PFLU_RS00175 0.35 -2.3
38,147 - PFLU_RS00175 0.35 -2.1
38,147 - PFLU_RS00175 0.35 -0.4
38,149 + PFLU_RS00175 0.35 +0.1
38,149 + PFLU_RS00175 0.35 +1.4
38,149 + PFLU_RS00175 0.35 -1.6
38,149 + PFLU_RS00175 0.35 -1.9
38,149 + PFLU_RS00175 0.35 -0.2
38,149 + PFLU_RS00175 0.35 -0.6
38,150 - PFLU_RS00175 0.35 -0.4
38,150 - PFLU_RS00175 0.35 -2.3
38,150 - PFLU_RS00175 0.35 -0.6
38,150 - PFLU_RS00175 0.35 +0.8
38,150 - PFLU_RS00175 0.35 -0.8
38,337 - PFLU_RS00175 0.59 -3.6
38,337 - PFLU_RS00175 0.59 -1.9
38,337 - PFLU_RS00175 0.59 +1.4
38,337 - PFLU_RS00175 0.59 -0.4
38,337 - PFLU_RS00175 0.59 -1.6
38,347 + PFLU_RS00175 0.60 -1.1
38,347 + PFLU_RS00175 0.60 +1.4
38,348 - PFLU_RS00175 0.60 -0.7
38,348 - PFLU_RS00175 0.60 -3.3
38,348 - PFLU_RS00175 0.60 -0.2
38,348 - PFLU_RS00175 0.60 -2.6
38,352 - PFLU_RS00175 0.60 -2.4
38,368 + PFLU_RS00175 0.62 +0.8
38,690 - -2.2
38,898 + PFLU_RS00180 0.18 -2.1
38,898 + PFLU_RS00180 0.18 -0.6
38,898 + PFLU_RS00180 0.18 -0.2
38,899 - PFLU_RS00180 0.19 -1.8
38,899 - PFLU_RS00180 0.19 -1.8
38,899 - PFLU_RS00180 0.19 +0.6
38,899 - PFLU_RS00180 0.19 -3.2
38,972 - PFLU_RS00180 0.24 -0.9
39,312 + PFLU_RS00180 0.52 +0.4
39,313 - PFLU_RS00180 0.52 -1.5
39,313 - PFLU_RS00180 0.52 -1.9
39,313 - PFLU_RS00180 0.52 -2.2
39,313 - PFLU_RS00180 0.52 -2.7
39,471 + PFLU_RS00180 0.65 -1.5
39,471 + PFLU_RS00180 0.65 +1.4
39,472 - PFLU_RS00180 0.65 -3.1
39,472 - PFLU_RS00180 0.65 -3.0
39,472 - PFLU_RS00180 0.65 -2.7
39,472 - PFLU_RS00180 0.65 -2.8
39,472 - PFLU_RS00180 0.65 -1.8
39,472 - PFLU_RS00180 0.65 -2.3
39,472 - PFLU_RS00180 0.65 -0.2
39,472 - PFLU_RS00180 0.65 -3.1
39,472 - PFLU_RS00180 0.65 -3.0
39,472 - PFLU_RS00180 0.65 -3.5
39,472 - PFLU_RS00180 0.65 -2.5
39,472 - PFLU_RS00180 0.65 -4.1
39,472 - PFLU_RS00180 0.65 -2.2
39,472 - PFLU_RS00180 0.65 -2.5
39,472 - PFLU_RS00180 0.65 -3.0
39,472 - PFLU_RS00180 0.65 -3.5
39,472 - PFLU_RS00180 0.65 -1.2
39,472 - PFLU_RS00180 0.65 +0.2
39,472 - PFLU_RS00180 0.65 -2.9
39,472 - PFLU_RS00180 0.65 -0.4
39,611 - PFLU_RS00180 0.77 -1.1
39,611 - PFLU_RS00180 0.77 -1.7
39,611 - PFLU_RS00180 0.77 -0.0
39,649 - PFLU_RS00180 0.80 -2.0
39,649 - PFLU_RS00180 0.80 -1.8
39,694 - PFLU_RS00180 0.83 -2.3
39,694 - PFLU_RS00180 0.83 -2.5
39,694 - PFLU_RS00180 0.83 -1.8
39,694 - PFLU_RS00180 0.83 -1.9
39,718 - PFLU_RS00180 0.85 -1.3
39,718 - PFLU_RS00180 0.85 -3.2
39,718 - PFLU_RS00180 0.85 -3.3
39,826 - -2.0
39,826 - -2.0
39,826 - -2.2
39,875 + -1.4
39,876 - +0.8
39,876 - -2.8
39,876 - -2.5
39,876 - -2.5
39,912 + -3.0
39,912 + -1.8
39,913 - +1.1
39,913 - -2.1
39,913 - -0.5
39,946 + -0.5
40,315 - PFLU_RS00185 0.34 -0.3
40,315 - PFLU_RS00185 0.34 -0.6
40,483 + PFLU_RS00185 0.53 +1.2
40,483 + PFLU_RS00185 0.53 -2.7
40,483 + PFLU_RS00185 0.53 -0.2
40,483 + PFLU_RS00185 0.53 +1.3
40,483 + PFLU_RS00185 0.53 +1.5
40,483 + PFLU_RS00185 0.53 +0.2
40,483 + PFLU_RS00185 0.53 +1.3
40,483 + PFLU_RS00185 0.53 -3.5
40,483 + PFLU_RS00185 0.53 -2.1
40,484 - PFLU_RS00185 0.53 +1.7
40,484 - PFLU_RS00185 0.53 +0.8
40,484 - PFLU_RS00185 0.53 -2.5
40,484 - PFLU_RS00185 0.53 -0.0
40,484 - PFLU_RS00185 0.53 -2.7
40,484 - PFLU_RS00185 0.53 +3.7
40,484 - PFLU_RS00185 0.53 +0.8
40,484 - PFLU_RS00185 0.53 -0.0
40,484 - PFLU_RS00185 0.53 -0.1
40,484 - PFLU_RS00185 0.53 +0.6
40,484 - PFLU_RS00185 0.53 +1.3
40,484 - PFLU_RS00185 0.53 -1.1
40,484 - PFLU_RS00185 0.53 +0.6
40,484 - PFLU_RS00185 0.53 -0.4
40,528 + PFLU_RS00185 0.58 +0.1
40,586 + PFLU_RS00185 0.64 +0.5
40,587 - PFLU_RS00185 0.64 +1.6
40,687 + PFLU_RS00185 0.76 -2.3
40,687 + PFLU_RS00185 0.76 -0.8
40,687 + PFLU_RS00185 0.76 -0.2
40,687 + PFLU_RS00185 0.76 -0.1
40,687 + PFLU_RS00185 0.76 -0.0
40,688 - PFLU_RS00185 0.76 -0.6
40,688 - PFLU_RS00185 0.76 +1.6
40,688 - PFLU_RS00185 0.76 -1.1
40,688 - PFLU_RS00185 0.76 +0.2
40,688 - PFLU_RS00185 0.76 +0.3
40,690 + PFLU_RS00185 0.76 -0.4
40,691 - PFLU_RS00185 0.76 +2.0
40,691 - PFLU_RS00185 0.76 +1.3
40,691 - PFLU_RS00185 0.76 -2.5
40,775 + PFLU_RS00185 0.85 +1.4
40,776 - PFLU_RS00185 0.86 +1.6

Or see this region's nucleotide sequence