Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00165 and PFLU_RS00170 are separated by 182 nucleotides PFLU_RS00170 and PFLU_RS00175 are separated by 136 nucleotides PFLU_RS00175 and PFLU_RS00180 overlap by 1 nucleotides
PFLU_RS00165: PFLU_RS00165 - MFS transporter, at 35,793 to 37,103
_RS00165
PFLU_RS00170: PFLU_RS00170 - RcnB family protein, at 37,286 to 37,726
_RS00170
PFLU_RS00175: PFLU_RS00175 - tryptophan synthase subunit alpha, at 37,863 to 38,672
_RS00175
PFLU_RS00180: PFLU_RS00180 - tryptophan synthase subunit beta, at 38,672 to 39,898
_RS00180
Position (kb) 37
38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 37.020 kb on + strand at 37.020 kb on + strand at 37.020 kb on + strand at 37.020 kb on + strand at 37.020 kb on + strand at 37.020 kb on + strand at 37.020 kb on + strand at 37.020 kb on + strand at 37.020 kb on + strand at 37.020 kb on + strand at 37.020 kb on + strand at 37.020 kb on + strand at 37.020 kb on + strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.021 kb on - strand at 37.022 kb on + strand at 37.022 kb on + strand at 37.023 kb on - strand at 37.023 kb on - strand at 37.023 kb on - strand at 37.023 kb on - strand at 37.033 kb on + strand at 37.033 kb on + strand at 37.034 kb on - strand at 37.056 kb on + strand at 37.056 kb on + strand at 37.056 kb on + strand at 37.056 kb on + strand at 37.056 kb on + strand at 37.057 kb on - strand at 37.057 kb on - strand at 37.057 kb on - strand at 37.057 kb on - strand at 37.057 kb on - strand at 37.073 kb on + strand at 37.101 kb on + strand at 37.102 kb on - strand at 37.261 kb on + strand at 37.261 kb on + strand at 37.261 kb on + strand at 37.261 kb on + strand at 37.261 kb on + strand at 37.261 kb on + strand at 37.261 kb on + strand at 37.262 kb on - strand at 37.262 kb on - strand at 37.262 kb on - strand at 37.262 kb on - strand at 37.262 kb on - strand at 37.262 kb on - strand at 37.287 kb on + strand at 37.287 kb on + strand at 37.287 kb on + strand at 37.287 kb on + strand at 37.287 kb on + strand at 37.288 kb on - strand at 37.288 kb on - strand at 37.288 kb on - strand at 37.315 kb on - strand at 37.315 kb on - strand at 37.384 kb on - strand, within PFLU_RS00170 at 37.384 kb on - strand, within PFLU_RS00170 at 37.431 kb on + strand, within PFLU_RS00170 at 37.432 kb on - strand, within PFLU_RS00170 at 37.466 kb on + strand, within PFLU_RS00170 at 37.466 kb on + strand, within PFLU_RS00170 at 37.466 kb on + strand, within PFLU_RS00170 at 37.466 kb on + strand, within PFLU_RS00170 at 37.466 kb on + strand, within PFLU_RS00170 at 37.466 kb on + strand, within PFLU_RS00170 at 37.466 kb on + strand, within PFLU_RS00170 at 37.467 kb on - strand, within PFLU_RS00170 at 37.467 kb on - strand, within PFLU_RS00170 at 37.467 kb on - strand, within PFLU_RS00170 at 37.467 kb on - strand, within PFLU_RS00170 at 37.467 kb on - strand, within PFLU_RS00170 at 37.467 kb on - strand, within PFLU_RS00170 at 37.647 kb on + strand, within PFLU_RS00170 at 37.648 kb on - strand, within PFLU_RS00170 at 37.731 kb on + strand at 37.732 kb on - strand at 37.749 kb on + strand at 37.749 kb on + strand at 37.749 kb on + strand at 37.830 kb on + strand at 37.830 kb on + strand at 37.830 kb on + strand at 37.831 kb on - strand at 37.831 kb on - strand at 37.831 kb on - strand at 37.842 kb on + strand at 37.842 kb on + strand at 37.843 kb on - strand at 37.843 kb on - strand at 37.843 kb on - strand at 37.846 kb on + strand at 37.847 kb on - strand at 37.864 kb on + strand at 37.864 kb on + strand at 37.865 kb on - strand at 37.865 kb on - strand at 37.865 kb on - strand at 37.865 kb on - strand at 37.865 kb on - strand at 37.865 kb on - strand at 37.865 kb on - strand at 37.868 kb on + strand at 37.868 kb on + strand at 37.868 kb on + strand at 37.869 kb on - strand at 37.869 kb on - strand at 37.869 kb on - strand at 38.028 kb on - strand, within PFLU_RS00175 at 38.063 kb on + strand, within PFLU_RS00175 at 38.146 kb on + strand, within PFLU_RS00175 at 38.146 kb on + strand, within PFLU_RS00175 at 38.146 kb on + strand, within PFLU_RS00175 at 38.146 kb on + strand, within PFLU_RS00175 at 38.146 kb on + strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.147 kb on - strand, within PFLU_RS00175 at 38.149 kb on + strand, within PFLU_RS00175 at 38.149 kb on + strand, within PFLU_RS00175 at 38.149 kb on + strand, within PFLU_RS00175 at 38.149 kb on + strand, within PFLU_RS00175 at 38.149 kb on + strand, within PFLU_RS00175 at 38.149 kb on + strand, within PFLU_RS00175 at 38.150 kb on - strand, within PFLU_RS00175 at 38.150 kb on - strand, within PFLU_RS00175 at 38.150 kb on - strand, within PFLU_RS00175 at 38.150 kb on - strand, within PFLU_RS00175 at 38.150 kb on - strand, within PFLU_RS00175 at 38.337 kb on - strand, within PFLU_RS00175 at 38.337 kb on - strand, within PFLU_RS00175 at 38.337 kb on - strand, within PFLU_RS00175 at 38.337 kb on - strand, within PFLU_RS00175 at 38.337 kb on - strand, within PFLU_RS00175 at 38.347 kb on + strand, within PFLU_RS00175 at 38.347 kb on + strand, within PFLU_RS00175 at 38.348 kb on - strand, within PFLU_RS00175 at 38.348 kb on - strand, within PFLU_RS00175 at 38.348 kb on - strand, within PFLU_RS00175 at 38.348 kb on - strand, within PFLU_RS00175 at 38.352 kb on - strand, within PFLU_RS00175 at 38.368 kb on + strand, within PFLU_RS00175 at 38.690 kb on - strand at 38.898 kb on + strand, within PFLU_RS00180 at 38.898 kb on + strand, within PFLU_RS00180 at 38.898 kb on + strand, within PFLU_RS00180 at 38.899 kb on - strand, within PFLU_RS00180 at 38.899 kb on - strand, within PFLU_RS00180 at 38.899 kb on - strand, within PFLU_RS00180 at 38.899 kb on - strand, within PFLU_RS00180 at 38.972 kb on - strand, within PFLU_RS00180 at 39.312 kb on + strand, within PFLU_RS00180 at 39.313 kb on - strand, within PFLU_RS00180 at 39.313 kb on - strand, within PFLU_RS00180 at 39.313 kb on - strand, within PFLU_RS00180 at 39.313 kb on - strand, within PFLU_RS00180 at 39.471 kb on + strand, within PFLU_RS00180 at 39.471 kb on + strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.472 kb on - strand, within PFLU_RS00180 at 39.611 kb on - strand, within PFLU_RS00180 at 39.611 kb on - strand, within PFLU_RS00180 at 39.611 kb on - strand, within PFLU_RS00180 at 39.649 kb on - strand, within PFLU_RS00180 at 39.649 kb on - strand, within PFLU_RS00180
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 37,020 + -3.7 37,020 + -0.3 37,020 + -0.4 37,020 + +0.5 37,020 + -1.3 37,020 + +1.2 37,020 + -0.2 37,020 + -1.7 37,020 + -0.1 37,020 + -2.4 37,020 + +0.5 37,020 + +0.2 37,020 + +0.4 37,021 - +2.0 37,021 - +0.7 37,021 - +1.5 37,021 - -3.2 37,021 - -0.3 37,021 - -1.3 37,021 - -0.4 37,021 - -0.2 37,021 - +0.9 37,021 - +0.2 37,021 - +0.0 37,021 - -2.2 37,021 - -0.4 37,021 - -2.5 37,021 - +0.5 37,021 - +0.4 37,021 - -1.8 37,022 + -1.0 37,022 + +0.2 37,023 - +1.5 37,023 - -1.2 37,023 - -0.2 37,023 - -1.0 37,033 + +1.5 37,033 + -2.1 37,034 - -0.1 37,056 + +0.1 37,056 + -1.2 37,056 + -0.4 37,056 + +0.9 37,056 + -0.9 37,057 - -0.3 37,057 - +0.6 37,057 - -0.8 37,057 - +2.0 37,057 - +1.7 37,073 + -2.6 37,101 + +0.6 37,102 - +1.4 37,261 + -1.5 37,261 + +1.7 37,261 + -0.3 37,261 + -0.8 37,261 + -1.4 37,261 + -1.4 37,261 + -0.4 37,262 - -0.5 37,262 - +0.8 37,262 - -0.8 37,262 - +3.3 37,262 - -0.8 37,262 - -1.8 37,287 + -0.8 37,287 + -0.5 37,287 + -1.6 37,287 + -2.9 37,287 + -1.3 37,288 - +0.8 37,288 - -0.6 37,288 - +2.0 37,315 - -1.1 37,315 - -2.8 37,384 - PFLU_RS00170 0.22 -0.7 37,384 - PFLU_RS00170 0.22 -0.8 37,431 + PFLU_RS00170 0.33 +0.8 37,432 - PFLU_RS00170 0.33 +0.9 37,466 + PFLU_RS00170 0.41 +0.7 37,466 + PFLU_RS00170 0.41 -0.8 37,466 + PFLU_RS00170 0.41 -0.8 37,466 + PFLU_RS00170 0.41 -0.8 37,466 + PFLU_RS00170 0.41 -0.1 37,466 + PFLU_RS00170 0.41 -0.4 37,466 + PFLU_RS00170 0.41 +0.6 37,467 - PFLU_RS00170 0.41 +0.8 37,467 - PFLU_RS00170 0.41 -2.3 37,467 - PFLU_RS00170 0.41 -0.4 37,467 - PFLU_RS00170 0.41 -2.7 37,467 - PFLU_RS00170 0.41 +1.3 37,467 - PFLU_RS00170 0.41 +1.0 37,647 + PFLU_RS00170 0.82 -2.5 37,648 - PFLU_RS00170 0.82 -0.5 37,731 + -0.5 37,732 - -2.1 37,749 + +2.3 37,749 + +0.7 37,749 + +1.3 37,830 + +0.9 37,830 + -2.2 37,830 + -0.7 37,831 - -0.1 37,831 - +0.2 37,831 - +0.3 37,842 + +0.9 37,842 + -2.6 37,843 - +1.7 37,843 - -2.1 37,843 - +0.2 37,846 + +1.7 37,847 - -0.5 37,864 + +1.9 37,864 + +2.0 37,865 - +0.6 37,865 - -0.8 37,865 - -1.8 37,865 - -0.9 37,865 - +2.4 37,865 - +0.7 37,865 - -0.5 37,868 + -0.3 37,868 + -0.4 37,868 + +0.6 37,869 - -1.1 37,869 - +0.3 37,869 - -0.2 38,028 - PFLU_RS00175 0.20 -2.2 38,063 + PFLU_RS00175 0.25 +0.8 38,146 + PFLU_RS00175 0.35 +1.4 38,146 + PFLU_RS00175 0.35 +2.4 38,146 + PFLU_RS00175 0.35 +0.1 38,146 + PFLU_RS00175 0.35 +0.4 38,146 + PFLU_RS00175 0.35 +1.4 38,147 - PFLU_RS00175 0.35 -2.8 38,147 - PFLU_RS00175 0.35 -2.2 38,147 - PFLU_RS00175 0.35 -1.9 38,147 - PFLU_RS00175 0.35 +0.8 38,147 - PFLU_RS00175 0.35 -0.4 38,147 - PFLU_RS00175 0.35 -2.2 38,147 - PFLU_RS00175 0.35 -1.8 38,147 - PFLU_RS00175 0.35 -1.6 38,147 - PFLU_RS00175 0.35 +1.1 38,147 - PFLU_RS00175 0.35 +0.1 38,147 - PFLU_RS00175 0.35 -1.5 38,147 - PFLU_RS00175 0.35 -2.5 38,147 - PFLU_RS00175 0.35 -2.3 38,147 - PFLU_RS00175 0.35 -2.1 38,147 - PFLU_RS00175 0.35 -0.4 38,149 + PFLU_RS00175 0.35 +0.1 38,149 + PFLU_RS00175 0.35 +1.4 38,149 + PFLU_RS00175 0.35 -1.6 38,149 + PFLU_RS00175 0.35 -1.9 38,149 + PFLU_RS00175 0.35 -0.2 38,149 + PFLU_RS00175 0.35 -0.6 38,150 - PFLU_RS00175 0.35 -0.4 38,150 - PFLU_RS00175 0.35 -2.3 38,150 - PFLU_RS00175 0.35 -0.6 38,150 - PFLU_RS00175 0.35 +0.8 38,150 - PFLU_RS00175 0.35 -0.8 38,337 - PFLU_RS00175 0.59 -3.6 38,337 - PFLU_RS00175 0.59 -1.9 38,337 - PFLU_RS00175 0.59 +1.4 38,337 - PFLU_RS00175 0.59 -0.4 38,337 - PFLU_RS00175 0.59 -1.6 38,347 + PFLU_RS00175 0.60 -1.1 38,347 + PFLU_RS00175 0.60 +1.4 38,348 - PFLU_RS00175 0.60 -0.7 38,348 - PFLU_RS00175 0.60 -3.3 38,348 - PFLU_RS00175 0.60 -0.2 38,348 - PFLU_RS00175 0.60 -2.6 38,352 - PFLU_RS00175 0.60 -2.4 38,368 + PFLU_RS00175 0.62 +0.8 38,690 - -2.2 38,898 + PFLU_RS00180 0.18 -2.1 38,898 + PFLU_RS00180 0.18 -0.6 38,898 + PFLU_RS00180 0.18 -0.2 38,899 - PFLU_RS00180 0.19 -1.8 38,899 - PFLU_RS00180 0.19 -1.8 38,899 - PFLU_RS00180 0.19 +0.6 38,899 - PFLU_RS00180 0.19 -3.2 38,972 - PFLU_RS00180 0.24 -0.9 39,312 + PFLU_RS00180 0.52 +0.4 39,313 - PFLU_RS00180 0.52 -1.5 39,313 - PFLU_RS00180 0.52 -1.9 39,313 - PFLU_RS00180 0.52 -2.2 39,313 - PFLU_RS00180 0.52 -2.7 39,471 + PFLU_RS00180 0.65 -1.5 39,471 + PFLU_RS00180 0.65 +1.4 39,472 - PFLU_RS00180 0.65 -3.1 39,472 - PFLU_RS00180 0.65 -3.0 39,472 - PFLU_RS00180 0.65 -2.7 39,472 - PFLU_RS00180 0.65 -2.8 39,472 - PFLU_RS00180 0.65 -1.8 39,472 - PFLU_RS00180 0.65 -2.3 39,472 - PFLU_RS00180 0.65 -0.2 39,472 - PFLU_RS00180 0.65 -3.1 39,472 - PFLU_RS00180 0.65 -3.0 39,472 - PFLU_RS00180 0.65 -3.5 39,472 - PFLU_RS00180 0.65 -2.5 39,472 - PFLU_RS00180 0.65 -4.1 39,472 - PFLU_RS00180 0.65 -2.2 39,472 - PFLU_RS00180 0.65 -2.5 39,472 - PFLU_RS00180 0.65 -3.0 39,472 - PFLU_RS00180 0.65 -3.5 39,472 - PFLU_RS00180 0.65 -1.2 39,472 - PFLU_RS00180 0.65 +0.2 39,472 - PFLU_RS00180 0.65 -2.9 39,472 - PFLU_RS00180 0.65 -0.4 39,611 - PFLU_RS00180 0.77 -1.1 39,611 - PFLU_RS00180 0.77 -1.7 39,611 - PFLU_RS00180 0.77 -0.0 39,649 - PFLU_RS00180 0.80 -2.0 39,649 - PFLU_RS00180 0.80 -1.8
Or see this region's nucleotide sequence