Strain Fitness in Pseudomonas sp. S08-1 around OH686_20780

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20770 and OH686_20775 are separated by 105 nucleotidesOH686_20775 and OH686_20780 are separated by 28 nucleotidesOH686_20780 and OH686_20785 are separated by 192 nucleotidesOH686_20785 and OH686_20790 are separated by 1 nucleotides OH686_20770: OH686_20770 - hypothetical protein, at 4,249,072 to 4,249,509 _20770 OH686_20775: OH686_20775 - Two-component transcriptional response regulator, LuxR family, at 4,249,615 to 4,250,292 _20775 OH686_20780: OH686_20780 - hypothetical protein, at 4,250,321 to 4,250,746 _20780 OH686_20785: OH686_20785 - YciL protein, at 4,250,939 to 4,251,238 _20785 OH686_20790: OH686_20790 - intracellular septation protein A, at 4,251,240 to 4,251,869 _20790 Position (kb) 4250 4251Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4249.560 kb on - strandat 4249.560 kb on - strandat 4249.594 kb on + strandat 4249.595 kb on - strandat 4249.625 kb on + strandat 4249.625 kb on + strandat 4249.625 kb on + strandat 4249.625 kb on + strandat 4249.626 kb on - strandat 4249.626 kb on - strandat 4249.626 kb on - strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.629 kb on - strandat 4249.629 kb on - strandat 4249.629 kb on - strandat 4249.629 kb on - strandat 4249.629 kb on - strandat 4249.631 kb on + strandat 4249.731 kb on - strand, within OH686_20775at 4249.731 kb on - strand, within OH686_20775at 4249.731 kb on - strand, within OH686_20775at 4249.886 kb on + strand, within OH686_20775at 4249.886 kb on + strand, within OH686_20775at 4249.886 kb on + strand, within OH686_20775at 4249.886 kb on + strand, within OH686_20775at 4249.886 kb on + strand, within OH686_20775at 4249.887 kb on - strand, within OH686_20775at 4249.887 kb on - strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.998 kb on - strand, within OH686_20775at 4249.998 kb on - strand, within OH686_20775at 4249.998 kb on - strand, within OH686_20775at 4250.377 kb on + strand, within OH686_20780at 4250.378 kb on - strand, within OH686_20780at 4250.727 kb on + strandat 4250.727 kb on + strandat 4250.727 kb on + strandat 4250.728 kb on - strandat 4250.728 kb on - strandat 4250.728 kb on - strandat 4250.728 kb on - strandat 4250.728 kb on - strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.805 kb on + strandat 4250.805 kb on + strandat 4250.806 kb on - strandat 4250.820 kb on + strandat 4250.820 kb on + strandat 4250.820 kb on + strandat 4250.821 kb on - strandat 4250.821 kb on - strandat 4250.821 kb on - strandat 4250.821 kb on - strandat 4250.821 kb on - strandat 4250.860 kb on + strandat 4250.860 kb on + strandat 4250.861 kb on - strandat 4250.869 kb on + strandat 4250.869 kb on + strandat 4250.869 kb on + strandat 4250.869 kb on + strandat 4250.869 kb on + strandat 4250.869 kb on + strandat 4250.870 kb on - strandat 4250.870 kb on - strandat 4250.924 kb on + strandat 4250.924 kb on + strandat 4250.924 kb on + strandat 4250.924 kb on + strandat 4250.924 kb on + strandat 4250.925 kb on - strandat 4250.982 kb on + strand, within OH686_20785at 4250.983 kb on - strand, within OH686_20785at 4251.231 kb on + strandat 4251.231 kb on + strandat 4251.231 kb on + strandat 4251.231 kb on + strandat 4251.231 kb on + strandat 4251.232 kb on - strandat 4251.232 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,249,560 - -0.4
4,249,560 - +0.2
4,249,594 + +0.7
4,249,595 - -0.8
4,249,625 + +1.9
4,249,625 + +1.4
4,249,625 + +1.6
4,249,625 + -0.8
4,249,626 - +1.6
4,249,626 - -2.7
4,249,626 - +1.3
4,249,628 + +2.2
4,249,628 + +0.4
4,249,628 + +0.7
4,249,628 + -0.6
4,249,628 + -3.6
4,249,628 + +0.5
4,249,628 + +0.3
4,249,628 + +0.7
4,249,628 + +0.1
4,249,628 + +0.1
4,249,629 - -0.4
4,249,629 - +1.0
4,249,629 - -0.9
4,249,629 - -0.4
4,249,629 - -0.2
4,249,631 + +1.1
4,249,731 - OH686_20775 0.17 +1.0
4,249,731 - OH686_20775 0.17 -2.3
4,249,731 - OH686_20775 0.17 +2.0
4,249,886 + OH686_20775 0.40 +0.5
4,249,886 + OH686_20775 0.40 +0.0
4,249,886 + OH686_20775 0.40 -0.4
4,249,886 + OH686_20775 0.40 +0.8
4,249,886 + OH686_20775 0.40 -2.2
4,249,887 - OH686_20775 0.40 -1.5
4,249,887 - OH686_20775 0.40 +0.0
4,249,997 + OH686_20775 0.56 +0.6
4,249,997 + OH686_20775 0.56 +0.6
4,249,997 + OH686_20775 0.56 -0.5
4,249,997 + OH686_20775 0.56 +1.4
4,249,997 + OH686_20775 0.56 -0.3
4,249,997 + OH686_20775 0.56 +1.3
4,249,997 + OH686_20775 0.56 +0.3
4,249,998 - OH686_20775 0.56 +2.4
4,249,998 - OH686_20775 0.56 -1.6
4,249,998 - OH686_20775 0.56 -1.2
4,250,377 + OH686_20780 0.13 -1.0
4,250,378 - OH686_20780 0.13 +0.1
4,250,727 + +0.2
4,250,727 + +0.7
4,250,727 + -2.3
4,250,728 - +1.7
4,250,728 - -0.0
4,250,728 - -0.4
4,250,728 - +1.4
4,250,728 - +0.0
4,250,768 + -1.0
4,250,768 + +1.6
4,250,768 + -1.1
4,250,768 + +0.1
4,250,768 + -0.7
4,250,768 + +1.3
4,250,768 + +0.9
4,250,768 + +0.9
4,250,768 + -0.2
4,250,769 - -0.8
4,250,769 - -1.5
4,250,769 - -0.9
4,250,769 - -0.9
4,250,769 - +0.7
4,250,769 - -1.8
4,250,769 - +0.3
4,250,769 - +1.2
4,250,769 - +1.0
4,250,769 - -1.5
4,250,769 - -1.3
4,250,769 - +0.8
4,250,769 - +1.2
4,250,805 + -1.1
4,250,805 + -0.8
4,250,806 - -0.2
4,250,820 + -1.1
4,250,820 + -1.3
4,250,820 + -0.0
4,250,821 - -0.0
4,250,821 - +1.3
4,250,821 - +0.4
4,250,821 - +0.8
4,250,821 - +1.3
4,250,860 + -0.5
4,250,860 + -0.4
4,250,861 - +0.9
4,250,869 + -0.3
4,250,869 + +1.5
4,250,869 + +0.2
4,250,869 + -1.0
4,250,869 + +1.0
4,250,869 + -0.3
4,250,870 - +1.4
4,250,870 - +0.4
4,250,924 + +0.2
4,250,924 + -0.1
4,250,924 + -1.0
4,250,924 + -0.4
4,250,924 + +0.1
4,250,925 - +0.8
4,250,982 + OH686_20785 0.14 +0.2
4,250,983 - OH686_20785 0.15 -1.4
4,251,231 + -0.1
4,251,231 + +1.1
4,251,231 + +0.2
4,251,231 + +1.1
4,251,231 + +1.3
4,251,232 - -0.6
4,251,232 - -0.8

Or see this region's nucleotide sequence