Strain Fitness in Pseudomonas sp. S08-1 around OH686_16615

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_16610 and OH686_16615 are separated by 3 nucleotidesOH686_16615 and OH686_16620 are separated by 217 nucleotides OH686_16610: OH686_16610 - Aliphatic amidase AmiE , at 3,473,685 to 3,474,728 _16610 OH686_16615: OH686_16615 - ClpB protein, at 3,474,732 to 3,475,766 _16615 OH686_16620: OH686_16620 - ATP-dependent RNA helicase, at 3,475,984 to 3,477,333 _16620 Position (kb) 3474 3475 3476Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3473.742 kb on + strandat 3473.742 kb on + strandat 3473.742 kb on + strandat 3473.742 kb on + strandat 3473.742 kb on + strandat 3473.743 kb on - strandat 3473.743 kb on - strandat 3473.743 kb on - strandat 3473.743 kb on - strandat 3473.743 kb on - strandat 3473.743 kb on - strandat 3473.862 kb on + strand, within OH686_16610at 3473.863 kb on - strand, within OH686_16610at 3473.883 kb on + strand, within OH686_16610at 3473.883 kb on + strand, within OH686_16610at 3473.883 kb on + strand, within OH686_16610at 3473.883 kb on + strand, within OH686_16610at 3473.883 kb on + strand, within OH686_16610at 3473.884 kb on - strand, within OH686_16610at 3473.884 kb on - strand, within OH686_16610at 3473.884 kb on - strand, within OH686_16610at 3473.884 kb on - strand, within OH686_16610at 3473.884 kb on - strand, within OH686_16610at 3473.884 kb on - strand, within OH686_16610at 3474.030 kb on + strand, within OH686_16610at 3474.030 kb on + strand, within OH686_16610at 3474.030 kb on + strand, within OH686_16610at 3474.030 kb on + strand, within OH686_16610at 3474.030 kb on + strand, within OH686_16610at 3474.031 kb on - strand, within OH686_16610at 3474.031 kb on - strand, within OH686_16610at 3474.031 kb on - strand, within OH686_16610at 3474.031 kb on - strand, within OH686_16610at 3474.031 kb on - strand, within OH686_16610at 3474.031 kb on - strand, within OH686_16610at 3474.078 kb on + strand, within OH686_16610at 3474.131 kb on + strand, within OH686_16610at 3474.131 kb on + strand, within OH686_16610at 3474.132 kb on - strand, within OH686_16610at 3474.132 kb on - strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.135 kb on + strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.136 kb on - strand, within OH686_16610at 3474.258 kb on + strand, within OH686_16610at 3474.258 kb on + strand, within OH686_16610at 3474.258 kb on + strand, within OH686_16610at 3474.258 kb on + strand, within OH686_16610at 3474.258 kb on + strand, within OH686_16610at 3474.258 kb on + strand, within OH686_16610at 3474.258 kb on + strand, within OH686_16610at 3474.259 kb on - strand, within OH686_16610at 3474.259 kb on - strand, within OH686_16610at 3474.259 kb on - strand, within OH686_16610at 3474.259 kb on - strand, within OH686_16610at 3474.259 kb on - strand, within OH686_16610at 3474.259 kb on - strand, within OH686_16610at 3474.259 kb on - strand, within OH686_16610at 3474.259 kb on - strand, within OH686_16610at 3474.259 kb on - strand, within OH686_16610at 3474.259 kb on - strand, within OH686_16610at 3474.259 kb on - strand, within OH686_16610at 3474.264 kb on + strand, within OH686_16610at 3474.264 kb on + strand, within OH686_16610at 3474.265 kb on - strand, within OH686_16610at 3474.265 kb on - strand, within OH686_16610at 3474.265 kb on - strand, within OH686_16610at 3474.324 kb on + strand, within OH686_16610at 3474.324 kb on + strand, within OH686_16610at 3474.325 kb on - strand, within OH686_16610at 3474.325 kb on - strand, within OH686_16610at 3474.363 kb on + strand, within OH686_16610at 3474.363 kb on + strand, within OH686_16610at 3474.363 kb on + strand, within OH686_16610at 3474.363 kb on + strand, within OH686_16610at 3474.363 kb on + strand, within OH686_16610at 3474.363 kb on + strand, within OH686_16610at 3474.363 kb on + strand, within OH686_16610at 3474.363 kb on + strand, within OH686_16610at 3474.364 kb on - strand, within OH686_16610at 3474.364 kb on - strand, within OH686_16610at 3474.369 kb on + strand, within OH686_16610at 3474.369 kb on + strand, within OH686_16610at 3474.369 kb on + strand, within OH686_16610at 3474.369 kb on + strand, within OH686_16610at 3474.369 kb on + strand, within OH686_16610at 3474.369 kb on + strand, within OH686_16610at 3474.369 kb on + strand, within OH686_16610at 3474.370 kb on - strand, within OH686_16610at 3474.370 kb on - strand, within OH686_16610at 3474.370 kb on - strand, within OH686_16610at 3474.447 kb on + strand, within OH686_16610at 3474.447 kb on + strand, within OH686_16610at 3474.534 kb on + strand, within OH686_16610at 3474.534 kb on + strand, within OH686_16610at 3474.534 kb on + strand, within OH686_16610at 3474.534 kb on + strand, within OH686_16610at 3474.535 kb on - strand, within OH686_16610at 3474.546 kb on + strand, within OH686_16610at 3474.546 kb on + strand, within OH686_16610at 3474.546 kb on + strand, within OH686_16610at 3474.546 kb on + strand, within OH686_16610at 3474.546 kb on + strand, within OH686_16610at 3474.546 kb on + strand, within OH686_16610at 3474.547 kb on - strand, within OH686_16610at 3474.547 kb on - strand, within OH686_16610at 3474.547 kb on - strand, within OH686_16610at 3474.547 kb on - strand, within OH686_16610at 3474.547 kb on - strand, within OH686_16610at 3474.547 kb on - strand, within OH686_16610at 3474.547 kb on - strand, within OH686_16610at 3474.547 kb on - strand, within OH686_16610at 3474.547 kb on - strand, within OH686_16610at 3474.597 kb on + strand, within OH686_16610at 3475.050 kb on - strand, within OH686_16615at 3475.050 kb on - strand, within OH686_16615at 3475.055 kb on + strand, within OH686_16615at 3475.055 kb on + strand, within OH686_16615at 3475.055 kb on + strand, within OH686_16615at 3475.055 kb on + strand, within OH686_16615at 3475.055 kb on + strand, within OH686_16615at 3475.055 kb on + strand, within OH686_16615at 3475.056 kb on - strand, within OH686_16615at 3475.056 kb on - strand, within OH686_16615at 3475.075 kb on - strand, within OH686_16615at 3475.107 kb on + strand, within OH686_16615at 3475.107 kb on + strand, within OH686_16615at 3475.107 kb on + strand, within OH686_16615at 3475.107 kb on + strand, within OH686_16615at 3475.108 kb on - strand, within OH686_16615at 3475.108 kb on - strand, within OH686_16615at 3475.108 kb on - strand, within OH686_16615at 3475.131 kb on - strand, within OH686_16615at 3475.623 kb on + strand, within OH686_16615at 3475.750 kb on + strandat 3475.807 kb on + strandat 3475.808 kb on - strandat 3475.808 kb on - strandat 3475.846 kb on + strandat 3475.846 kb on + strandat 3475.846 kb on + strandat 3475.846 kb on + strandat 3475.847 kb on - strandat 3475.855 kb on + strandat 3475.855 kb on + strandat 3475.855 kb on + strandat 3475.855 kb on + strandat 3475.856 kb on - strandat 3475.856 kb on - strandat 3475.856 kb on - strandat 3475.899 kb on + strandat 3475.910 kb on + strandat 3475.910 kb on + strandat 3475.910 kb on + strandat 3475.911 kb on - strandat 3475.911 kb on - strandat 3475.911 kb on - strandat 3476.045 kb on - strandat 3476.045 kb on - strandat 3476.045 kb on - strandat 3476.092 kb on - strandat 3476.092 kb on - strandat 3476.272 kb on + strand, within OH686_16620at 3476.273 kb on - strand, within OH686_16620at 3476.273 kb on - strand, within OH686_16620at 3476.299 kb on + strand, within OH686_16620at 3476.299 kb on + strand, within OH686_16620at 3476.299 kb on + strand, within OH686_16620at 3476.300 kb on - strand, within OH686_16620at 3476.398 kb on + strand, within OH686_16620at 3476.698 kb on + strand, within OH686_16620at 3476.699 kb on - strand, within OH686_16620

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
3,473,742 + +0.1
3,473,742 + +1.1
3,473,742 + -0.1
3,473,742 + +0.1
3,473,742 + -1.4
3,473,743 - -0.3
3,473,743 - +0.5
3,473,743 - -2.6
3,473,743 - +1.2
3,473,743 - -1.9
3,473,743 - +0.4
3,473,862 + OH686_16610 0.17 -0.0
3,473,863 - OH686_16610 0.17 +1.1
3,473,883 + OH686_16610 0.19 +0.6
3,473,883 + OH686_16610 0.19 -2.2
3,473,883 + OH686_16610 0.19 -2.6
3,473,883 + OH686_16610 0.19 +0.7
3,473,883 + OH686_16610 0.19 -1.4
3,473,884 - OH686_16610 0.19 +0.4
3,473,884 - OH686_16610 0.19 -2.2
3,473,884 - OH686_16610 0.19 -0.1
3,473,884 - OH686_16610 0.19 +0.8
3,473,884 - OH686_16610 0.19 +1.5
3,473,884 - OH686_16610 0.19 +0.0
3,474,030 + OH686_16610 0.33 -0.4
3,474,030 + OH686_16610 0.33 +0.2
3,474,030 + OH686_16610 0.33 +0.7
3,474,030 + OH686_16610 0.33 -2.5
3,474,030 + OH686_16610 0.33 +0.9
3,474,031 - OH686_16610 0.33 +0.4
3,474,031 - OH686_16610 0.33 +0.6
3,474,031 - OH686_16610 0.33 -1.7
3,474,031 - OH686_16610 0.33 -0.7
3,474,031 - OH686_16610 0.33 -0.6
3,474,031 - OH686_16610 0.33 +0.7
3,474,078 + OH686_16610 0.38 -0.9
3,474,131 + OH686_16610 0.43 +0.8
3,474,131 + OH686_16610 0.43 +1.9
3,474,132 - OH686_16610 0.43 -0.9
3,474,132 - OH686_16610 0.43 +0.7
3,474,135 + OH686_16610 0.43 +1.0
3,474,135 + OH686_16610 0.43 -1.4
3,474,135 + OH686_16610 0.43 +0.4
3,474,135 + OH686_16610 0.43 -1.6
3,474,135 + OH686_16610 0.43 +0.3
3,474,135 + OH686_16610 0.43 -0.9
3,474,135 + OH686_16610 0.43 +0.9
3,474,135 + OH686_16610 0.43 +3.7
3,474,135 + OH686_16610 0.43 -0.7
3,474,135 + OH686_16610 0.43 -0.9
3,474,135 + OH686_16610 0.43 -1.0
3,474,135 + OH686_16610 0.43 +1.2
3,474,135 + OH686_16610 0.43 -2.5
3,474,135 + OH686_16610 0.43 +1.9
3,474,135 + OH686_16610 0.43 +0.2
3,474,135 + OH686_16610 0.43 +0.3
3,474,135 + OH686_16610 0.43 -1.4
3,474,135 + OH686_16610 0.43 -3.1
3,474,136 - OH686_16610 0.43 -1.0
3,474,136 - OH686_16610 0.43 +1.9
3,474,136 - OH686_16610 0.43 -0.1
3,474,136 - OH686_16610 0.43 +0.3
3,474,136 - OH686_16610 0.43 -2.4
3,474,136 - OH686_16610 0.43 -0.6
3,474,136 - OH686_16610 0.43 +0.7
3,474,136 - OH686_16610 0.43 +0.8
3,474,136 - OH686_16610 0.43 -2.2
3,474,136 - OH686_16610 0.43 +0.8
3,474,136 - OH686_16610 0.43 -1.4
3,474,136 - OH686_16610 0.43 -0.6
3,474,136 - OH686_16610 0.43 -1.3
3,474,136 - OH686_16610 0.43 -0.2
3,474,136 - OH686_16610 0.43 +0.4
3,474,136 - OH686_16610 0.43 +0.1
3,474,136 - OH686_16610 0.43 +0.5
3,474,136 - OH686_16610 0.43 -2.4
3,474,258 + OH686_16610 0.55 -0.3
3,474,258 + OH686_16610 0.55 -1.2
3,474,258 + OH686_16610 0.55 +0.7
3,474,258 + OH686_16610 0.55 -0.4
3,474,258 + OH686_16610 0.55 -0.9
3,474,258 + OH686_16610 0.55 -0.8
3,474,258 + OH686_16610 0.55 +0.5
3,474,259 - OH686_16610 0.55 +1.7
3,474,259 - OH686_16610 0.55 -0.6
3,474,259 - OH686_16610 0.55 +0.2
3,474,259 - OH686_16610 0.55 +0.7
3,474,259 - OH686_16610 0.55 -1.5
3,474,259 - OH686_16610 0.55 +1.5
3,474,259 - OH686_16610 0.55 -0.1
3,474,259 - OH686_16610 0.55 -0.3
3,474,259 - OH686_16610 0.55 +0.4
3,474,259 - OH686_16610 0.55 +0.2
3,474,259 - OH686_16610 0.55 +1.9
3,474,264 + OH686_16610 0.55 +0.9
3,474,264 + OH686_16610 0.55 +1.7
3,474,265 - OH686_16610 0.56 -0.3
3,474,265 - OH686_16610 0.56 +1.3
3,474,265 - OH686_16610 0.56 -0.6
3,474,324 + OH686_16610 0.61 -0.4
3,474,324 + OH686_16610 0.61 +1.5
3,474,325 - OH686_16610 0.61 -0.5
3,474,325 - OH686_16610 0.61 +0.2
3,474,363 + OH686_16610 0.65 +0.6
3,474,363 + OH686_16610 0.65 -1.8
3,474,363 + OH686_16610 0.65 +0.3
3,474,363 + OH686_16610 0.65 -1.7
3,474,363 + OH686_16610 0.65 +0.6
3,474,363 + OH686_16610 0.65 -3.0
3,474,363 + OH686_16610 0.65 +1.1
3,474,363 + OH686_16610 0.65 -1.9
3,474,364 - OH686_16610 0.65 -0.6
3,474,364 - OH686_16610 0.65 +1.6
3,474,369 + OH686_16610 0.66 -0.2
3,474,369 + OH686_16610 0.66 +0.8
3,474,369 + OH686_16610 0.66 -1.1
3,474,369 + OH686_16610 0.66 -1.6
3,474,369 + OH686_16610 0.66 -0.7
3,474,369 + OH686_16610 0.66 +0.8
3,474,369 + OH686_16610 0.66 +0.2
3,474,370 - OH686_16610 0.66 -0.9
3,474,370 - OH686_16610 0.66 +0.3
3,474,370 - OH686_16610 0.66 +0.9
3,474,447 + OH686_16610 0.73 +0.2
3,474,447 + OH686_16610 0.73 -0.3
3,474,534 + OH686_16610 0.81 +0.8
3,474,534 + OH686_16610 0.81 -0.5
3,474,534 + OH686_16610 0.81 +0.9
3,474,534 + OH686_16610 0.81 -1.0
3,474,535 - OH686_16610 0.81 -0.6
3,474,546 + OH686_16610 0.82 -1.8
3,474,546 + OH686_16610 0.82 +0.9
3,474,546 + OH686_16610 0.82 +0.9
3,474,546 + OH686_16610 0.82 -0.6
3,474,546 + OH686_16610 0.82 +1.0
3,474,546 + OH686_16610 0.82 +0.8
3,474,547 - OH686_16610 0.83 -0.4
3,474,547 - OH686_16610 0.83 +0.6
3,474,547 - OH686_16610 0.83 +1.9
3,474,547 - OH686_16610 0.83 +2.1
3,474,547 - OH686_16610 0.83 -0.4
3,474,547 - OH686_16610 0.83 -0.2
3,474,547 - OH686_16610 0.83 -1.6
3,474,547 - OH686_16610 0.83 -0.6
3,474,547 - OH686_16610 0.83 -2.6
3,474,597 + OH686_16610 0.87 -1.9
3,475,050 - OH686_16615 0.31 +0.3
3,475,050 - OH686_16615 0.31 +2.9
3,475,055 + OH686_16615 0.31 -0.0
3,475,055 + OH686_16615 0.31 -1.2
3,475,055 + OH686_16615 0.31 +0.2
3,475,055 + OH686_16615 0.31 -0.6
3,475,055 + OH686_16615 0.31 -2.5
3,475,055 + OH686_16615 0.31 -3.3
3,475,056 - OH686_16615 0.31 -2.3
3,475,056 - OH686_16615 0.31 -1.2
3,475,075 - OH686_16615 0.33 -0.8
3,475,107 + OH686_16615 0.36 +0.4
3,475,107 + OH686_16615 0.36 -0.4
3,475,107 + OH686_16615 0.36 +0.1
3,475,107 + OH686_16615 0.36 +0.3
3,475,108 - OH686_16615 0.36 +0.2
3,475,108 - OH686_16615 0.36 +1.2
3,475,108 - OH686_16615 0.36 -0.4
3,475,131 - OH686_16615 0.39 +0.1
3,475,623 + OH686_16615 0.86 +0.3
3,475,750 + -2.6
3,475,807 + -2.2
3,475,808 - -0.9
3,475,808 - +0.3
3,475,846 + -1.1
3,475,846 + +0.2
3,475,846 + +0.6
3,475,846 + +0.9
3,475,847 - -1.4
3,475,855 + +1.1
3,475,855 + +0.9
3,475,855 + +1.4
3,475,855 + +1.4
3,475,856 - -0.1
3,475,856 - -0.4
3,475,856 - +0.4
3,475,899 + +0.4
3,475,910 + +0.7
3,475,910 + -0.7
3,475,910 + -1.6
3,475,911 - -0.9
3,475,911 - +0.2
3,475,911 - +0.1
3,476,045 - -0.2
3,476,045 - -0.1
3,476,045 - +0.2
3,476,092 - -2.4
3,476,092 - -0.1
3,476,272 + OH686_16620 0.21 -0.6
3,476,273 - OH686_16620 0.21 +0.3
3,476,273 - OH686_16620 0.21 -0.9
3,476,299 + OH686_16620 0.23 +0.7
3,476,299 + OH686_16620 0.23 -1.5
3,476,299 + OH686_16620 0.23 +0.3
3,476,300 - OH686_16620 0.23 +0.4
3,476,398 + OH686_16620 0.31 +0.4
3,476,698 + OH686_16620 0.53 -0.1
3,476,699 - OH686_16620 0.53 +0.5

Or see this region's nucleotide sequence