Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_04830 and OH686_04835 are separated by 81 nucleotides OH686_04835 and OH686_04840 are separated by 63 nucleotides OH686_04840 and OH686_04845 are separated by 324 nucleotides
OH686_04830: OH686_04830 - ATP-dependent helicase DinG/Rad3, at 995,212 to 997,359
_04830
OH686_04835: OH686_04835 - Putative membrane-spanning protein, at 997,441 to 997,905
_04835
OH686_04840: OH686_04840 - Nonspecific porin and structural outer membrane protein OprF, at 997,969 to 998,514
_04840
OH686_04845: OH686_04845 - Nonspecific porin and structural outer membrane protein OprF, at 998,839 to 999,465
_04845
Position (kb) 997
998
999 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 996.981 kb on - strand, within OH686_04830 at 996.981 kb on - strand, within OH686_04830 at 996.981 kb on - strand, within OH686_04830 at 997.054 kb on - strand, within OH686_04830 at 997.146 kb on - strand at 997.320 kb on - strand at 997.320 kb on - strand at 997.401 kb on + strand at 997.401 kb on + strand at 997.402 kb on - strand at 997.406 kb on + strand at 997.406 kb on + strand at 997.407 kb on - strand at 997.407 kb on - strand at 997.458 kb on + strand at 997.458 kb on + strand at 997.458 kb on + strand at 997.458 kb on + strand at 997.458 kb on + strand at 997.458 kb on + strand at 997.458 kb on + strand at 997.458 kb on + strand at 997.458 kb on + strand at 997.458 kb on + strand at 997.458 kb on + strand at 997.458 kb on + strand at 997.458 kb on + strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.459 kb on - strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.462 kb on + strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.463 kb on - strand at 997.693 kb on + strand, within OH686_04835 at 997.693 kb on + strand, within OH686_04835 at 997.693 kb on + strand, within OH686_04835 at 997.693 kb on + strand, within OH686_04835 at 997.694 kb on - strand, within OH686_04835 at 997.694 kb on - strand, within OH686_04835 at 997.694 kb on - strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.697 kb on + strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.698 kb on - strand, within OH686_04835 at 997.717 kb on + strand, within OH686_04835 at 997.717 kb on + strand, within OH686_04835 at 997.717 kb on + strand, within OH686_04835 at 997.717 kb on + strand, within OH686_04835 at 997.718 kb on - strand, within OH686_04835 at 997.718 kb on - strand, within OH686_04835 at 997.718 kb on - strand, within OH686_04835 at 997.718 kb on - strand, within OH686_04835 at 997.907 kb on - strand at 997.907 kb on - strand at 997.950 kb on + strand at 997.950 kb on + strand at 997.950 kb on + strand at 997.950 kb on + strand at 997.951 kb on - strand at 997.951 kb on - strand at 997.951 kb on - strand at 997.951 kb on - strand at 997.970 kb on + strand at 998.162 kb on + strand, within OH686_04840 at 998.162 kb on + strand, within OH686_04840 at 998.162 kb on + strand, within OH686_04840 at 998.163 kb on - strand, within OH686_04840 at 998.163 kb on - strand, within OH686_04840 at 998.163 kb on - strand, within OH686_04840 at 998.338 kb on + strand, within OH686_04840 at 998.339 kb on - strand, within OH686_04840 at 998.369 kb on + strand, within OH686_04840 at 998.446 kb on + strand, within OH686_04840 at 998.446 kb on + strand, within OH686_04840 at 998.446 kb on + strand, within OH686_04840 at 998.446 kb on + strand, within OH686_04840 at 998.447 kb on - strand, within OH686_04840 at 998.447 kb on - strand, within OH686_04840 at 998.447 kb on - strand, within OH686_04840 at 998.447 kb on - strand, within OH686_04840 at 998.447 kb on - strand, within OH686_04840 at 998.447 kb on - strand, within OH686_04840 at 998.447 kb on - strand, within OH686_04840 at 998.480 kb on + strand at 998.480 kb on + strand at 998.480 kb on + strand at 998.480 kb on + strand at 998.481 kb on - strand at 998.481 kb on - strand at 998.481 kb on - strand at 998.535 kb on + strand at 998.535 kb on + strand at 998.535 kb on + strand at 998.535 kb on + strand at 998.536 kb on - strand at 998.661 kb on + strand at 998.661 kb on + strand at 998.661 kb on + strand at 998.661 kb on + strand at 998.661 kb on + strand at 998.661 kb on + strand at 998.661 kb on + strand at 998.662 kb on - strand at 998.662 kb on - strand at 998.662 kb on - strand at 998.662 kb on - strand at 998.680 kb on + strand at 998.680 kb on + strand at 998.753 kb on + strand at 998.753 kb on + strand at 998.753 kb on + strand at 998.753 kb on + strand at 998.775 kb on + strand at 998.775 kb on + strand at 998.776 kb on - strand at 998.806 kb on + strand at 998.806 kb on + strand at 998.806 kb on + strand at 998.807 kb on - strand at 998.807 kb on - strand at 998.807 kb on - strand at 998.836 kb on + strand at 998.836 kb on + strand at 998.836 kb on + strand at 998.836 kb on + strand at 998.836 kb on + strand at 998.836 kb on + strand at 998.836 kb on + strand at 998.836 kb on + strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.837 kb on - strand at 998.840 kb on + strand at 998.840 kb on + strand at 998.841 kb on - strand at 998.841 kb on - strand at 998.966 kb on + strand, within OH686_04845 at 998.967 kb on - strand, within OH686_04845 at 998.980 kb on + strand, within OH686_04845 at 998.980 kb on + strand, within OH686_04845 at 998.980 kb on + strand, within OH686_04845 at 998.981 kb on - strand, within OH686_04845 at 998.981 kb on - strand, within OH686_04845 at 998.981 kb on - strand, within OH686_04845 at 998.981 kb on - strand, within OH686_04845 at 998.981 kb on - strand, within OH686_04845 at 998.981 kb on - strand, within OH686_04845 at 998.981 kb on - strand, within OH686_04845 at 998.989 kb on + strand, within OH686_04845 at 998.989 kb on + strand, within OH686_04845 at 998.989 kb on + strand, within OH686_04845 at 998.989 kb on + strand, within OH686_04845 at 998.990 kb on - strand, within OH686_04845 at 998.990 kb on - strand, within OH686_04845 at 998.990 kb on - strand, within OH686_04845 at 998.990 kb on - strand, within OH686_04845 at 998.990 kb on - strand, within OH686_04845 at 998.990 kb on - strand, within OH686_04845 at 998.990 kb on - strand, within OH686_04845 at 998.990 kb on - strand, within OH686_04845 at 999.272 kb on + strand, within OH686_04845 at 999.272 kb on + strand, within OH686_04845 at 999.272 kb on + strand, within OH686_04845 at 999.272 kb on + strand, within OH686_04845 at 999.272 kb on + strand, within OH686_04845 at 999.273 kb on - strand, within OH686_04845 at 999.273 kb on - strand, within OH686_04845 at 999.442 kb on + strand at 999.443 kb on - strand at 999.459 kb on + strand at 999.459 kb on + strand at 999.459 kb on - strand at 999.460 kb on - strand at 999.460 kb on - strand at 999.471 kb on + strand at 999.471 kb on + strand at 999.471 kb on + strand at 999.471 kb on + strand at 999.471 kb on + strand at 999.472 kb on - strand at 999.472 kb on - strand at 999.472 kb on - strand at 999.472 kb on - strand at 999.472 kb on - strand at 999.472 kb on - strand at 999.472 kb on - strand at 999.495 kb on + strand at 999.496 kb on - strand at 999.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 996,981 - OH686_04830 0.82 -0.7 996,981 - OH686_04830 0.82 +0.4 996,981 - OH686_04830 0.82 +0.7 997,054 - OH686_04830 0.86 -0.1 997,146 - -4.0 997,320 - -0.6 997,320 - -1.0 997,401 + -0.9 997,401 + -3.0 997,402 - -0.4 997,406 + -0.1 997,406 + +1.1 997,407 - -0.6 997,407 - +0.5 997,458 + -1.3 997,458 + +0.1 997,458 + -1.3 997,458 + -1.1 997,458 + +0.3 997,458 + +0.9 997,458 + +0.0 997,458 + +1.0 997,458 + +0.5 997,458 + -0.8 997,458 + +0.8 997,458 + +0.6 997,458 + +0.7 997,459 - +0.5 997,459 - -0.9 997,459 - +0.8 997,459 - -2.9 997,459 - +0.6 997,459 - +0.3 997,459 - -0.1 997,459 - -0.5 997,459 - +1.1 997,459 - -0.6 997,459 - +2.0 997,459 - -3.3 997,459 - -0.5 997,459 - +0.0 997,459 - +1.3 997,459 - +0.7 997,459 - -0.0 997,459 - -0.4 997,459 - +0.3 997,459 - -0.2 997,459 - -0.8 997,459 - -0.6 997,459 - -3.1 997,459 - -1.1 997,462 + +1.6 997,462 + +0.7 997,462 + -0.9 997,462 + -0.2 997,462 + +0.2 997,462 + +0.4 997,462 + +0.5 997,462 + +0.6 997,462 + -0.8 997,462 + -0.6 997,462 + +0.8 997,462 + +0.6 997,462 + -2.3 997,462 + +0.5 997,463 - +1.3 997,463 - +0.2 997,463 - -0.6 997,463 - -1.0 997,463 - +0.9 997,463 - +0.3 997,463 - -1.4 997,463 - +0.2 997,463 - -0.1 997,463 - -1.4 997,463 - -0.6 997,463 - +0.8 997,463 - +0.4 997,463 - +1.0 997,693 + OH686_04835 0.54 +0.4 997,693 + OH686_04835 0.54 +0.1 997,693 + OH686_04835 0.54 -1.3 997,693 + OH686_04835 0.54 -0.4 997,694 - OH686_04835 0.54 -0.3 997,694 - OH686_04835 0.54 +0.3 997,694 - OH686_04835 0.54 +0.1 997,697 + OH686_04835 0.55 +0.4 997,697 + OH686_04835 0.55 +1.5 997,697 + OH686_04835 0.55 -0.4 997,697 + OH686_04835 0.55 +0.6 997,697 + OH686_04835 0.55 -2.6 997,697 + OH686_04835 0.55 -1.9 997,697 + OH686_04835 0.55 -1.2 997,697 + OH686_04835 0.55 +1.0 997,697 + OH686_04835 0.55 +0.8 997,697 + OH686_04835 0.55 +1.3 997,697 + OH686_04835 0.55 -0.9 997,697 + OH686_04835 0.55 -0.4 997,697 + OH686_04835 0.55 +0.8 997,697 + OH686_04835 0.55 -0.6 997,697 + OH686_04835 0.55 -1.1 997,698 - OH686_04835 0.55 -2.4 997,698 - OH686_04835 0.55 +1.1 997,698 - OH686_04835 0.55 +0.4 997,698 - OH686_04835 0.55 -2.6 997,698 - OH686_04835 0.55 -2.3 997,698 - OH686_04835 0.55 +0.9 997,698 - OH686_04835 0.55 +0.6 997,698 - OH686_04835 0.55 +0.6 997,698 - OH686_04835 0.55 -0.1 997,698 - OH686_04835 0.55 +0.6 997,698 - OH686_04835 0.55 -0.6 997,698 - OH686_04835 0.55 +0.6 997,698 - OH686_04835 0.55 +0.6 997,698 - OH686_04835 0.55 -0.7 997,698 - OH686_04835 0.55 -0.9 997,698 - OH686_04835 0.55 +0.5 997,698 - OH686_04835 0.55 +1.8 997,698 - OH686_04835 0.55 +0.2 997,717 + OH686_04835 0.59 +0.8 997,717 + OH686_04835 0.59 -1.3 997,717 + OH686_04835 0.59 -4.3 997,717 + OH686_04835 0.59 +1.2 997,718 - OH686_04835 0.60 +0.7 997,718 - OH686_04835 0.60 -0.6 997,718 - OH686_04835 0.60 +0.4 997,718 - OH686_04835 0.60 -0.1 997,907 - -0.7 997,907 - -2.2 997,950 + -2.0 997,950 + +1.5 997,950 + -1.6 997,950 + +1.3 997,951 - -1.6 997,951 - -1.1 997,951 - -2.0 997,951 - -0.5 997,970 + +0.9 998,162 + OH686_04840 0.35 -2.2 998,162 + OH686_04840 0.35 -0.9 998,162 + OH686_04840 0.35 -1.0 998,163 - OH686_04840 0.36 -0.2 998,163 - OH686_04840 0.36 -0.3 998,163 - OH686_04840 0.36 -0.8 998,338 + OH686_04840 0.68 -3.5 998,339 - OH686_04840 0.68 +0.1 998,369 + OH686_04840 0.73 +0.1 998,446 + OH686_04840 0.87 +0.7 998,446 + OH686_04840 0.87 -0.2 998,446 + OH686_04840 0.87 -1.0 998,446 + OH686_04840 0.87 -0.3 998,447 - OH686_04840 0.88 -0.0 998,447 - OH686_04840 0.88 -1.0 998,447 - OH686_04840 0.88 +0.3 998,447 - OH686_04840 0.88 -2.6 998,447 - OH686_04840 0.88 -0.7 998,447 - OH686_04840 0.88 -0.2 998,447 - OH686_04840 0.88 +0.5 998,480 + -0.5 998,480 + +0.4 998,480 + +0.9 998,480 + +0.2 998,481 - -1.2 998,481 - +0.5 998,481 - -0.2 998,535 + -0.4 998,535 + +0.0 998,535 + +0.6 998,535 + -1.1 998,536 - +1.0 998,661 + +1.4 998,661 + -1.7 998,661 + -1.9 998,661 + +0.1 998,661 + +0.1 998,661 + +0.9 998,661 + +2.1 998,662 - -0.3 998,662 - -0.0 998,662 - -0.4 998,662 - -0.4 998,680 + -0.5 998,680 + +1.0 998,753 + -0.2 998,753 + +0.9 998,753 + +1.1 998,753 + -0.6 998,775 + -0.1 998,775 + -0.3 998,776 - -0.9 998,806 + -2.2 998,806 + +0.2 998,806 + +1.8 998,807 - -1.4 998,807 - +1.4 998,807 - +0.4 998,836 + +0.1 998,836 + +0.6 998,836 + +2.3 998,836 + +0.8 998,836 + +1.4 998,836 + +1.3 998,836 + +0.0 998,836 + -0.3 998,837 - -1.8 998,837 - +0.6 998,837 - +1.3 998,837 - +0.4 998,837 - +0.6 998,837 - -1.3 998,837 - -0.4 998,837 - +0.1 998,837 - +2.6 998,837 - -0.4 998,837 - -1.9 998,837 - +2.3 998,837 - +0.7 998,837 - +1.3 998,840 + -1.7 998,840 + +0.3 998,841 - +0.9 998,841 - +0.6 998,966 + OH686_04845 0.20 -0.1 998,967 - OH686_04845 0.20 -0.0 998,980 + OH686_04845 0.22 +2.0 998,980 + OH686_04845 0.22 -1.1 998,980 + OH686_04845 0.22 +0.6 998,981 - OH686_04845 0.23 -2.2 998,981 - OH686_04845 0.23 +0.3 998,981 - OH686_04845 0.23 +1.8 998,981 - OH686_04845 0.23 +2.1 998,981 - OH686_04845 0.23 +1.4 998,981 - OH686_04845 0.23 +0.6 998,981 - OH686_04845 0.23 +1.1 998,989 + OH686_04845 0.24 +0.1 998,989 + OH686_04845 0.24 -2.4 998,989 + OH686_04845 0.24 +1.7 998,989 + OH686_04845 0.24 +1.0 998,990 - OH686_04845 0.24 -0.8 998,990 - OH686_04845 0.24 +2.0 998,990 - OH686_04845 0.24 -2.4 998,990 - OH686_04845 0.24 +0.6 998,990 - OH686_04845 0.24 -0.5 998,990 - OH686_04845 0.24 -0.8 998,990 - OH686_04845 0.24 +0.5 998,990 - OH686_04845 0.24 -0.3 999,272 + OH686_04845 0.69 +0.5 999,272 + OH686_04845 0.69 -0.4 999,272 + OH686_04845 0.69 -0.8 999,272 + OH686_04845 0.69 +0.5 999,272 + OH686_04845 0.69 -0.7 999,273 - OH686_04845 0.69 -1.1 999,273 - OH686_04845 0.69 -0.4 999,442 + -2.1 999,443 - +0.7 999,459 + +0.8 999,459 + -0.8 999,459 - +0.4 999,460 - +1.2 999,460 - +0.8 999,471 + -2.6 999,471 + +1.2 999,471 + -0.8 999,471 + -0.5 999,471 + +0.1 999,472 - -1.3 999,472 - +0.3 999,472 - +0.9 999,472 - +1.4 999,472 - +0.4 999,472 - +1.4 999,472 - -2.4 999,495 + -1.8 999,496 - +2.7 999,496 - +0.0
Or see this region's nucleotide sequence