Strain Fitness in Pseudomonas sp. S08-1 around OH686_03215

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_03210 and OH686_03215 are separated by 65 nucleotidesOH686_03215 and OH686_03220 are separated by 118 nucleotidesOH686_03220 and OH686_03225 are separated by 236 nucleotidesOH686_03225 and OH686_03230 are separated by 131 nucleotides OH686_03210: OH686_03210 - hypothetical protein, at 671,871 to 672,671 _03210 OH686_03215: OH686_03215 - spermidine synthase, at 672,737 to 673,597 _03215 OH686_03220: OH686_03220 - hypothetical protein, at 673,716 to 673,898 _03220 OH686_03225: OH686_03225 - hypothetical protein, at 674,135 to 674,401 _03225 OH686_03230: OH686_03230 - hypothetical protein, at 674,533 to 674,817 _03230 Position (kb) 672 673 674Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 671.843 kb on + strandat 671.844 kb on - strandat 671.844 kb on - strandat 671.888 kb on - strandat 671.921 kb on - strandat 671.921 kb on - strandat 671.965 kb on - strand, within OH686_03210at 671.965 kb on - strand, within OH686_03210at 671.988 kb on + strand, within OH686_03210at 671.988 kb on + strand, within OH686_03210at 671.988 kb on + strand, within OH686_03210at 671.988 kb on + strand, within OH686_03210at 671.988 kb on + strand, within OH686_03210at 671.988 kb on + strand, within OH686_03210at 671.988 kb on + strand, within OH686_03210at 671.989 kb on - strand, within OH686_03210at 671.989 kb on - strand, within OH686_03210at 671.990 kb on + strand, within OH686_03210at 671.990 kb on + strand, within OH686_03210at 671.991 kb on - strand, within OH686_03210at 671.991 kb on - strand, within OH686_03210at 671.991 kb on - strand, within OH686_03210at 672.268 kb on + strand, within OH686_03210at 672.268 kb on + strand, within OH686_03210at 672.269 kb on - strand, within OH686_03210at 672.269 kb on - strand, within OH686_03210at 672.360 kb on + strand, within OH686_03210at 672.360 kb on + strand, within OH686_03210at 672.361 kb on - strand, within OH686_03210at 672.361 kb on - strand, within OH686_03210at 672.447 kb on + strand, within OH686_03210at 672.447 kb on + strand, within OH686_03210at 672.447 kb on + strand, within OH686_03210at 672.447 kb on + strand, within OH686_03210at 672.447 kb on + strand, within OH686_03210at 672.447 kb on + strand, within OH686_03210at 672.447 kb on + strand, within OH686_03210at 672.448 kb on - strand, within OH686_03210at 672.448 kb on - strand, within OH686_03210at 672.448 kb on - strand, within OH686_03210at 672.511 kb on + strand, within OH686_03210at 672.511 kb on + strand, within OH686_03210at 672.511 kb on + strand, within OH686_03210at 672.511 kb on + strand, within OH686_03210at 672.511 kb on + strand, within OH686_03210at 672.511 kb on + strand, within OH686_03210at 672.511 kb on + strand, within OH686_03210at 672.512 kb on - strand, within OH686_03210at 672.512 kb on - strand, within OH686_03210at 672.512 kb on - strand, within OH686_03210at 672.512 kb on - strand, within OH686_03210at 672.512 kb on - strand, within OH686_03210at 672.512 kb on - strand, within OH686_03210at 672.547 kb on - strand, within OH686_03210at 672.547 kb on - strand, within OH686_03210at 672.547 kb on - strand, within OH686_03210at 672.570 kb on + strand, within OH686_03210at 672.570 kb on + strand, within OH686_03210at 672.570 kb on + strand, within OH686_03210at 672.571 kb on - strand, within OH686_03210at 672.571 kb on - strand, within OH686_03210at 672.657 kb on + strandat 672.657 kb on + strandat 672.658 kb on - strandat 672.658 kb on - strandat 672.658 kb on - strandat 672.774 kb on + strandat 672.775 kb on - strandat 672.775 kb on - strandat 672.775 kb on - strandat 672.816 kb on + strandat 672.816 kb on + strandat 672.816 kb on + strandat 672.816 kb on + strandat 672.816 kb on + strandat 672.816 kb on + strandat 672.816 kb on + strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.817 kb on - strandat 672.819 kb on + strandat 672.872 kb on + strand, within OH686_03215at 672.872 kb on + strand, within OH686_03215at 672.873 kb on - strand, within OH686_03215at 672.873 kb on - strand, within OH686_03215at 672.873 kb on - strand, within OH686_03215at 672.882 kb on + strand, within OH686_03215at 672.883 kb on - strand, within OH686_03215at 672.928 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.930 kb on + strand, within OH686_03215at 672.931 kb on - strand, within OH686_03215at 672.931 kb on - strand, within OH686_03215at 672.931 kb on - strand, within OH686_03215at 672.931 kb on - strand, within OH686_03215at 672.931 kb on - strand, within OH686_03215at 672.931 kb on - strand, within OH686_03215at 672.931 kb on - strand, within OH686_03215at 672.931 kb on - strand, within OH686_03215at 672.931 kb on - strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.951 kb on + strand, within OH686_03215at 672.952 kb on - strand, within OH686_03215at 672.952 kb on - strand, within OH686_03215at 672.952 kb on - strand, within OH686_03215at 672.952 kb on - strand, within OH686_03215at 672.952 kb on - strand, within OH686_03215at 672.952 kb on - strand, within OH686_03215at 672.952 kb on - strand, within OH686_03215at 672.952 kb on - strand, within OH686_03215at 672.952 kb on - strand, within OH686_03215at 673.010 kb on + strand, within OH686_03215at 673.010 kb on + strand, within OH686_03215at 673.010 kb on + strand, within OH686_03215at 673.010 kb on + strand, within OH686_03215at 673.011 kb on - strand, within OH686_03215at 673.011 kb on - strand, within OH686_03215at 673.083 kb on + strand, within OH686_03215at 673.083 kb on + strand, within OH686_03215at 673.084 kb on - strand, within OH686_03215at 673.084 kb on - strand, within OH686_03215at 673.084 kb on - strand, within OH686_03215at 673.084 kb on - strand, within OH686_03215at 673.084 kb on - strand, within OH686_03215at 673.221 kb on + strand, within OH686_03215at 673.221 kb on + strand, within OH686_03215at 673.222 kb on - strand, within OH686_03215at 673.222 kb on - strand, within OH686_03215at 673.222 kb on - strand, within OH686_03215at 673.261 kb on + strand, within OH686_03215at 673.261 kb on + strand, within OH686_03215at 673.261 kb on + strand, within OH686_03215at 673.261 kb on + strand, within OH686_03215at 673.262 kb on - strand, within OH686_03215at 673.262 kb on - strand, within OH686_03215at 673.262 kb on - strand, within OH686_03215at 673.262 kb on - strand, within OH686_03215at 673.262 kb on - strand, within OH686_03215at 673.262 kb on - strand, within OH686_03215at 673.262 kb on - strand, within OH686_03215at 673.262 kb on - strand, within OH686_03215at 673.262 kb on - strand, within OH686_03215at 673.262 kb on - strand, within OH686_03215at 673.419 kb on + strand, within OH686_03215at 673.419 kb on + strand, within OH686_03215at 673.419 kb on + strand, within OH686_03215at 673.419 kb on + strand, within OH686_03215at 673.419 kb on + strand, within OH686_03215at 673.419 kb on + strand, within OH686_03215at 673.420 kb on - strand, within OH686_03215at 673.420 kb on - strand, within OH686_03215at 673.420 kb on - strand, within OH686_03215at 673.563 kb on + strandat 673.572 kb on + strandat 673.572 kb on + strandat 673.572 kb on + strandat 673.573 kb on - strandat 673.573 kb on - strandat 673.587 kb on + strandat 673.665 kb on + strandat 673.665 kb on + strandat 673.665 kb on + strandat 673.665 kb on + strandat 673.665 kb on + strandat 673.665 kb on + strandat 673.665 kb on + strandat 673.665 kb on + strandat 673.666 kb on - strandat 673.666 kb on - strandat 673.666 kb on - strandat 673.666 kb on - strandat 673.666 kb on - strandat 673.666 kb on - strandat 673.673 kb on + strandat 673.673 kb on + strandat 673.673 kb on + strandat 673.674 kb on - strandat 673.717 kb on + strandat 673.717 kb on + strandat 673.717 kb on + strandat 673.717 kb on + strandat 673.718 kb on - strandat 673.718 kb on - strandat 673.718 kb on - strandat 673.771 kb on - strand, within OH686_03220at 673.856 kb on + strand, within OH686_03220at 673.883 kb on + strandat 673.883 kb on + strandat 673.883 kb on + strandat 673.883 kb on + strandat 673.883 kb on + strandat 673.883 kb on + strandat 673.883 kb on + strandat 673.883 kb on + strandat 673.884 kb on - strandat 673.884 kb on - strandat 673.884 kb on - strandat 673.884 kb on - strandat 673.884 kb on - strandat 673.884 kb on - strandat 673.891 kb on + strandat 673.891 kb on + strandat 673.891 kb on + strandat 673.892 kb on - strandat 673.892 kb on - strandat 673.924 kb on + strandat 673.924 kb on + strandat 673.925 kb on - strandat 673.925 kb on - strandat 673.925 kb on - strandat 673.925 kb on - strandat 673.925 kb on - strandat 673.931 kb on + strandat 673.931 kb on + strandat 673.931 kb on + strandat 673.931 kb on + strandat 673.931 kb on + strandat 673.931 kb on + strandat 673.932 kb on - strandat 673.932 kb on - strandat 673.932 kb on - strandat 673.932 kb on - strandat 673.932 kb on - strandat 673.932 kb on - strandat 674.082 kb on + strandat 674.082 kb on + strandat 674.082 kb on + strandat 674.082 kb on + strandat 674.083 kb on - strandat 674.083 kb on - strandat 674.083 kb on - strandat 674.083 kb on - strandat 674.083 kb on - strandat 674.083 kb on - strandat 674.303 kb on + strand, within OH686_03225at 674.303 kb on + strand, within OH686_03225at 674.303 kb on + strand, within OH686_03225at 674.303 kb on + strand, within OH686_03225at 674.303 kb on + strand, within OH686_03225at 674.303 kb on + strand, within OH686_03225at 674.303 kb on + strand, within OH686_03225at 674.304 kb on - strand, within OH686_03225at 674.304 kb on - strand, within OH686_03225at 674.304 kb on - strand, within OH686_03225at 674.304 kb on - strand, within OH686_03225at 674.304 kb on - strand, within OH686_03225at 674.399 kb on + strandat 674.400 kb on - strandat 674.400 kb on - strandat 674.475 kb on - strandat 674.502 kb on - strandat 674.502 kb on - strandat 674.509 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
671,843 + +0.0
671,844 - +3.2
671,844 - +0.4
671,888 - -2.2
671,921 - +0.2
671,921 - -2.2
671,965 - OH686_03210 0.12 +0.4
671,965 - OH686_03210 0.12 -0.7
671,988 + OH686_03210 0.15 -1.5
671,988 + OH686_03210 0.15 -3.4
671,988 + OH686_03210 0.15 -1.3
671,988 + OH686_03210 0.15 +1.6
671,988 + OH686_03210 0.15 -2.1
671,988 + OH686_03210 0.15 -0.4
671,988 + OH686_03210 0.15 +0.5
671,989 - OH686_03210 0.15 +0.2
671,989 - OH686_03210 0.15 -0.9
671,990 + OH686_03210 0.15 +0.8
671,990 + OH686_03210 0.15 +0.6
671,991 - OH686_03210 0.15 +0.0
671,991 - OH686_03210 0.15 +0.5
671,991 - OH686_03210 0.15 -0.1
672,268 + OH686_03210 0.50 -2.2
672,268 + OH686_03210 0.50 +0.9
672,269 - OH686_03210 0.50 +0.3
672,269 - OH686_03210 0.50 -0.1
672,360 + OH686_03210 0.61 +0.6
672,360 + OH686_03210 0.61 +0.3
672,361 - OH686_03210 0.61 -0.2
672,361 - OH686_03210 0.61 +0.7
672,447 + OH686_03210 0.72 -2.4
672,447 + OH686_03210 0.72 -3.0
672,447 + OH686_03210 0.72 -0.2
672,447 + OH686_03210 0.72 +0.1
672,447 + OH686_03210 0.72 -3.2
672,447 + OH686_03210 0.72 -0.5
672,447 + OH686_03210 0.72 +1.5
672,448 - OH686_03210 0.72 -2.2
672,448 - OH686_03210 0.72 -0.3
672,448 - OH686_03210 0.72 -1.4
672,511 + OH686_03210 0.80 -0.8
672,511 + OH686_03210 0.80 +0.3
672,511 + OH686_03210 0.80 -0.5
672,511 + OH686_03210 0.80 +0.4
672,511 + OH686_03210 0.80 -0.2
672,511 + OH686_03210 0.80 +0.7
672,511 + OH686_03210 0.80 +0.1
672,512 - OH686_03210 0.80 +1.1
672,512 - OH686_03210 0.80 +0.7
672,512 - OH686_03210 0.80 +0.3
672,512 - OH686_03210 0.80 +1.1
672,512 - OH686_03210 0.80 +0.6
672,512 - OH686_03210 0.80 -0.4
672,547 - OH686_03210 0.84 -0.0
672,547 - OH686_03210 0.84 -0.8
672,547 - OH686_03210 0.84 -1.1
672,570 + OH686_03210 0.87 -0.2
672,570 + OH686_03210 0.87 -3.0
672,570 + OH686_03210 0.87 +0.2
672,571 - OH686_03210 0.87 -0.0
672,571 - OH686_03210 0.87 +0.1
672,657 + +0.8
672,657 + +0.2
672,658 - +1.0
672,658 - -2.4
672,658 - -0.3
672,774 + -2.0
672,775 - -1.2
672,775 - -0.7
672,775 - -0.9
672,816 + -0.5
672,816 + +0.6
672,816 + -0.9
672,816 + -2.6
672,816 + -1.5
672,816 + -1.8
672,816 + -2.9
672,817 - -2.4
672,817 - -1.6
672,817 - -2.6
672,817 - -1.4
672,817 - +0.1
672,817 - -0.7
672,817 - -0.7
672,817 - -1.8
672,817 - -0.6
672,817 - -1.5
672,817 - -0.6
672,817 - -2.3
672,817 - +0.6
672,817 - -0.7
672,817 - -1.1
672,819 + +0.9
672,872 + OH686_03215 0.16 -0.3
672,872 + OH686_03215 0.16 -0.6
672,873 - OH686_03215 0.16 -2.8
672,873 - OH686_03215 0.16 -0.1
672,873 - OH686_03215 0.16 -3.1
672,882 + OH686_03215 0.17 -2.5
672,883 - OH686_03215 0.17 -0.2
672,928 + OH686_03215 0.22 -2.7
672,930 + OH686_03215 0.22 -1.4
672,930 + OH686_03215 0.22 -0.5
672,930 + OH686_03215 0.22 +0.1
672,930 + OH686_03215 0.22 -1.2
672,930 + OH686_03215 0.22 -1.1
672,930 + OH686_03215 0.22 -1.4
672,930 + OH686_03215 0.22 -0.7
672,930 + OH686_03215 0.22 -1.2
672,930 + OH686_03215 0.22 -0.9
672,930 + OH686_03215 0.22 +0.8
672,930 + OH686_03215 0.22 -1.5
672,930 + OH686_03215 0.22 +0.9
672,930 + OH686_03215 0.22 -1.2
672,930 + OH686_03215 0.22 -1.7
672,930 + OH686_03215 0.22 -0.9
672,930 + OH686_03215 0.22 -2.1
672,930 + OH686_03215 0.22 -0.7
672,931 - OH686_03215 0.23 +0.5
672,931 - OH686_03215 0.23 -1.2
672,931 - OH686_03215 0.23 -1.1
672,931 - OH686_03215 0.23 -1.0
672,931 - OH686_03215 0.23 +0.6
672,931 - OH686_03215 0.23 -1.0
672,931 - OH686_03215 0.23 -2.9
672,931 - OH686_03215 0.23 -1.9
672,931 - OH686_03215 0.23 -3.6
672,951 + OH686_03215 0.25 -0.4
672,951 + OH686_03215 0.25 -2.9
672,951 + OH686_03215 0.25 -2.3
672,951 + OH686_03215 0.25 -1.8
672,951 + OH686_03215 0.25 -1.8
672,951 + OH686_03215 0.25 -0.9
672,951 + OH686_03215 0.25 -1.2
672,951 + OH686_03215 0.25 -1.1
672,951 + OH686_03215 0.25 -1.9
672,951 + OH686_03215 0.25 -1.4
672,951 + OH686_03215 0.25 -0.2
672,951 + OH686_03215 0.25 -0.1
672,951 + OH686_03215 0.25 -2.0
672,952 - OH686_03215 0.25 +0.5
672,952 - OH686_03215 0.25 -0.8
672,952 - OH686_03215 0.25 -0.7
672,952 - OH686_03215 0.25 -2.9
672,952 - OH686_03215 0.25 -1.8
672,952 - OH686_03215 0.25 -2.1
672,952 - OH686_03215 0.25 -1.5
672,952 - OH686_03215 0.25 +0.9
672,952 - OH686_03215 0.25 -2.0
673,010 + OH686_03215 0.32 -2.5
673,010 + OH686_03215 0.32 -0.9
673,010 + OH686_03215 0.32 -1.7
673,010 + OH686_03215 0.32 -0.5
673,011 - OH686_03215 0.32 -0.1
673,011 - OH686_03215 0.32 -2.5
673,083 + OH686_03215 0.40 -0.4
673,083 + OH686_03215 0.40 +0.9
673,084 - OH686_03215 0.40 -0.1
673,084 - OH686_03215 0.40 -0.5
673,084 - OH686_03215 0.40 -0.7
673,084 - OH686_03215 0.40 -1.5
673,084 - OH686_03215 0.40 -2.2
673,221 + OH686_03215 0.56 -2.2
673,221 + OH686_03215 0.56 -2.5
673,222 - OH686_03215 0.56 -0.4
673,222 - OH686_03215 0.56 -0.1
673,222 - OH686_03215 0.56 -2.8
673,261 + OH686_03215 0.61 -2.7
673,261 + OH686_03215 0.61 -2.7
673,261 + OH686_03215 0.61 -0.4
673,261 + OH686_03215 0.61 -0.8
673,262 - OH686_03215 0.61 -0.2
673,262 - OH686_03215 0.61 -2.5
673,262 - OH686_03215 0.61 -2.2
673,262 - OH686_03215 0.61 -2.5
673,262 - OH686_03215 0.61 -2.3
673,262 - OH686_03215 0.61 -2.8
673,262 - OH686_03215 0.61 -3.2
673,262 - OH686_03215 0.61 -1.1
673,262 - OH686_03215 0.61 -2.2
673,262 - OH686_03215 0.61 +0.3
673,419 + OH686_03215 0.79 -1.5
673,419 + OH686_03215 0.79 -2.7
673,419 + OH686_03215 0.79 -0.2
673,419 + OH686_03215 0.79 -3.3
673,419 + OH686_03215 0.79 -2.3
673,419 + OH686_03215 0.79 +0.1
673,420 - OH686_03215 0.79 -1.5
673,420 - OH686_03215 0.79 -2.2
673,420 - OH686_03215 0.79 -1.2
673,563 + -1.6
673,572 + +1.8
673,572 + -2.3
673,572 + -0.7
673,573 - -2.5
673,573 - -2.3
673,587 + -2.0
673,665 + +1.5
673,665 + +0.2
673,665 + -3.2
673,665 + +0.8
673,665 + -0.0
673,665 + -1.3
673,665 + +0.5
673,665 + -0.1
673,666 - -2.7
673,666 - +0.3
673,666 - +1.0
673,666 - -1.2
673,666 - -0.1
673,666 - -0.6
673,673 + -1.0
673,673 + +1.7
673,673 + +0.7
673,674 - -1.1
673,717 + -0.1
673,717 + +0.9
673,717 + +0.3
673,717 + -2.2
673,718 - +1.6
673,718 - -1.4
673,718 - +1.8
673,771 - OH686_03220 0.30 -0.1
673,856 + OH686_03220 0.77 -0.8
673,883 + -1.2
673,883 + -3.6
673,883 + +0.3
673,883 + -0.8
673,883 + +0.1
673,883 + -0.1
673,883 + +1.0
673,883 + -3.3
673,884 - +0.2
673,884 - -0.0
673,884 - +2.0
673,884 - -1.4
673,884 - -2.0
673,884 - +0.3
673,891 + +1.1
673,891 + +0.6
673,891 + +1.4
673,892 - -2.0
673,892 - +0.1
673,924 + +1.1
673,924 + -0.4
673,925 - -1.8
673,925 - -2.0
673,925 - -0.4
673,925 - -0.2
673,925 - -1.3
673,931 + -0.8
673,931 + +0.5
673,931 + +0.8
673,931 + -0.3
673,931 + +0.5
673,931 + -1.3
673,932 - +0.6
673,932 - -0.0
673,932 - +1.3
673,932 - -0.2
673,932 - -4.0
673,932 - -0.2
674,082 + -0.5
674,082 + -0.1
674,082 + +0.1
674,082 + -1.0
674,083 - +1.4
674,083 - -1.2
674,083 - -0.7
674,083 - +1.0
674,083 - +0.5
674,083 - -0.9
674,303 + OH686_03225 0.63 -1.1
674,303 + OH686_03225 0.63 -0.8
674,303 + OH686_03225 0.63 -0.2
674,303 + OH686_03225 0.63 +0.6
674,303 + OH686_03225 0.63 +1.4
674,303 + OH686_03225 0.63 +0.4
674,303 + OH686_03225 0.63 +1.1
674,304 - OH686_03225 0.63 -0.1
674,304 - OH686_03225 0.63 +0.4
674,304 - OH686_03225 0.63 +0.7
674,304 - OH686_03225 0.63 +1.5
674,304 - OH686_03225 0.63 +0.6
674,399 + -2.7
674,400 - +0.5
674,400 - -2.5
674,475 - +0.9
674,502 - +0.2
674,502 - +0.6
674,509 - +0.7

Or see this region's nucleotide sequence