Strain Fitness in Pseudomonas sp. S08-1 around OH686_02555

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02550 and OH686_02555 are separated by 37 nucleotidesOH686_02555 and OH686_02560 are separated by 12 nucleotides OH686_02550: OH686_02550 - Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly, at 542,562 to 544,037 _02550 OH686_02555: OH686_02555 - Flp pilus assembly protein CpaB, at 544,075 to 544,875 _02555 OH686_02560: OH686_02560 - Predicted ATPase with chaperone activity, associated with Flp pilus assembly, at 544,888 to 546,207 _02560 Position (kb) 544 545Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 543.103 kb on + strand, within OH686_02550at 543.103 kb on + strand, within OH686_02550at 543.104 kb on - strand, within OH686_02550at 543.104 kb on - strand, within OH686_02550at 543.104 kb on - strand, within OH686_02550at 543.104 kb on - strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.307 kb on - strand, within OH686_02550at 543.307 kb on - strand, within OH686_02550at 543.307 kb on - strand, within OH686_02550at 543.307 kb on - strand, within OH686_02550at 543.307 kb on - strand, within OH686_02550at 543.559 kb on + strand, within OH686_02550at 543.559 kb on + strand, within OH686_02550at 543.559 kb on + strand, within OH686_02550at 543.559 kb on + strand, within OH686_02550at 543.560 kb on - strand, within OH686_02550at 543.645 kb on + strand, within OH686_02550at 543.645 kb on + strand, within OH686_02550at 543.676 kb on + strand, within OH686_02550at 543.676 kb on + strand, within OH686_02550at 543.677 kb on - strand, within OH686_02550at 543.796 kb on + strand, within OH686_02550at 543.796 kb on + strand, within OH686_02550at 543.796 kb on + strand, within OH686_02550at 543.796 kb on + strand, within OH686_02550at 543.797 kb on - strand, within OH686_02550at 543.797 kb on - strand, within OH686_02550at 543.797 kb on - strand, within OH686_02550at 543.797 kb on - strand, within OH686_02550at 543.797 kb on - strand, within OH686_02550at 543.797 kb on - strand, within OH686_02550at 543.895 kb on + strandat 543.895 kb on + strandat 543.896 kb on - strandat 543.896 kb on - strandat 543.896 kb on - strandat 544.054 kb on - strandat 544.054 kb on - strandat 544.077 kb on - strandat 544.077 kb on - strandat 544.077 kb on - strandat 544.077 kb on - strandat 544.090 kb on + strandat 544.090 kb on + strandat 544.090 kb on + strandat 544.090 kb on + strandat 544.090 kb on + strandat 544.090 kb on + strandat 544.090 kb on + strandat 544.090 kb on + strandat 544.090 kb on + strandat 544.090 kb on + strandat 544.090 kb on + strandat 544.091 kb on - strandat 544.091 kb on - strandat 544.091 kb on - strandat 544.091 kb on - strandat 544.091 kb on - strandat 544.091 kb on - strandat 544.091 kb on - strandat 544.091 kb on - strandat 544.091 kb on - strandat 544.337 kb on - strand, within OH686_02555at 544.852 kb on + strandat 544.863 kb on + strandat 544.863 kb on + strandat 544.864 kb on - strandat 544.864 kb on - strandat 544.864 kb on - strandat 544.864 kb on - strandat 544.916 kb on + strandat 544.916 kb on + strandat 544.916 kb on + strandat 544.916 kb on + strandat 544.916 kb on + strandat 544.916 kb on + strandat 544.916 kb on + strandat 544.916 kb on + strandat 544.917 kb on - strandat 544.917 kb on - strandat 544.917 kb on - strandat 544.917 kb on - strandat 544.917 kb on - strandat 544.917 kb on - strandat 544.917 kb on - strandat 544.917 kb on - strandat 544.917 kb on - strandat 544.917 kb on - strandat 544.973 kb on + strandat 545.048 kb on + strand, within OH686_02560at 545.048 kb on + strand, within OH686_02560at 545.048 kb on + strand, within OH686_02560at 545.049 kb on - strand, within OH686_02560at 545.066 kb on + strand, within OH686_02560at 545.066 kb on + strand, within OH686_02560at 545.066 kb on + strand, within OH686_02560at 545.067 kb on - strand, within OH686_02560at 545.067 kb on - strand, within OH686_02560at 545.067 kb on - strand, within OH686_02560at 545.132 kb on + strand, within OH686_02560at 545.132 kb on + strand, within OH686_02560at 545.150 kb on + strand, within OH686_02560at 545.150 kb on + strand, within OH686_02560at 545.150 kb on + strand, within OH686_02560at 545.151 kb on - strand, within OH686_02560at 545.168 kb on + strand, within OH686_02560at 545.168 kb on + strand, within OH686_02560at 545.168 kb on + strand, within OH686_02560at 545.168 kb on + strand, within OH686_02560at 545.311 kb on + strand, within OH686_02560at 545.423 kb on + strand, within OH686_02560at 545.423 kb on + strand, within OH686_02560at 545.423 kb on + strand, within OH686_02560at 545.424 kb on - strand, within OH686_02560at 545.579 kb on + strand, within OH686_02560at 545.579 kb on + strand, within OH686_02560at 545.579 kb on + strand, within OH686_02560at 545.579 kb on + strand, within OH686_02560at 545.579 kb on + strand, within OH686_02560at 545.579 kb on + strand, within OH686_02560at 545.579 kb on + strand, within OH686_02560at 545.580 kb on - strand, within OH686_02560at 545.580 kb on - strand, within OH686_02560at 545.580 kb on - strand, within OH686_02560at 545.580 kb on - strand, within OH686_02560at 545.580 kb on - strand, within OH686_02560at 545.580 kb on - strand, within OH686_02560at 545.615 kb on + strand, within OH686_02560at 545.615 kb on + strand, within OH686_02560at 545.615 kb on + strand, within OH686_02560at 545.616 kb on - strand, within OH686_02560at 545.616 kb on - strand, within OH686_02560at 545.616 kb on - strand, within OH686_02560at 545.616 kb on - strand, within OH686_02560at 545.664 kb on + strand, within OH686_02560at 545.664 kb on + strand, within OH686_02560at 545.665 kb on - strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.666 kb on + strand, within OH686_02560at 545.667 kb on - strand, within OH686_02560at 545.667 kb on - strand, within OH686_02560at 545.667 kb on - strand, within OH686_02560at 545.667 kb on - strand, within OH686_02560at 545.667 kb on - strand, within OH686_02560at 545.667 kb on - strand, within OH686_02560at 545.667 kb on - strand, within OH686_02560at 545.667 kb on - strand, within OH686_02560at 545.693 kb on + strand, within OH686_02560at 545.693 kb on + strand, within OH686_02560at 545.693 kb on + strand, within OH686_02560at 545.694 kb on - strand, within OH686_02560at 545.694 kb on - strand, within OH686_02560at 545.694 kb on - strand, within OH686_02560at 545.814 kb on + strand, within OH686_02560at 545.815 kb on - strand, within OH686_02560at 545.874 kb on - strand, within OH686_02560

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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543,103 + OH686_02550 0.37 +0.8
543,103 + OH686_02550 0.37 +0.3
543,104 - OH686_02550 0.37 -1.4
543,104 - OH686_02550 0.37 +0.7
543,104 - OH686_02550 0.37 +0.9
543,104 - OH686_02550 0.37 -1.3
543,306 + OH686_02550 0.50 -1.2
543,306 + OH686_02550 0.50 -3.4
543,306 + OH686_02550 0.50 -1.6
543,306 + OH686_02550 0.50 -0.2
543,306 + OH686_02550 0.50 -0.1
543,306 + OH686_02550 0.50 +0.2
543,306 + OH686_02550 0.50 -2.0
543,307 - OH686_02550 0.50 -1.9
543,307 - OH686_02550 0.50 +0.1
543,307 - OH686_02550 0.50 -1.6
543,307 - OH686_02550 0.50 +0.5
543,307 - OH686_02550 0.50 -0.2
543,559 + OH686_02550 0.68 +1.6
543,559 + OH686_02550 0.68 +0.4
543,559 + OH686_02550 0.68 -1.7
543,559 + OH686_02550 0.68 -1.2
543,560 - OH686_02550 0.68 -0.2
543,645 + OH686_02550 0.73 -0.3
543,645 + OH686_02550 0.73 -0.9
543,676 + OH686_02550 0.75 +0.5
543,676 + OH686_02550 0.75 -0.1
543,677 - OH686_02550 0.76 -0.8
543,796 + OH686_02550 0.84 -0.8
543,796 + OH686_02550 0.84 +0.1
543,796 + OH686_02550 0.84 -0.2
543,796 + OH686_02550 0.84 +0.4
543,797 - OH686_02550 0.84 -2.2
543,797 - OH686_02550 0.84 -1.0
543,797 - OH686_02550 0.84 -0.5
543,797 - OH686_02550 0.84 -0.6
543,797 - OH686_02550 0.84 -0.2
543,797 - OH686_02550 0.84 -0.8
543,895 + +1.8
543,895 + +0.2
543,896 - +0.6
543,896 - -0.5
543,896 - -1.7
544,054 - +0.2
544,054 - +0.3
544,077 - -2.3
544,077 - -1.9
544,077 - +0.6
544,077 - -3.3
544,090 + +1.1
544,090 + -1.6
544,090 + -0.3
544,090 + +0.5
544,090 + -1.2
544,090 + +0.7
544,090 + -0.7
544,090 + -0.7
544,090 + +0.6
544,090 + +0.1
544,090 + -2.0
544,091 - +0.5
544,091 - +0.8
544,091 - +0.3
544,091 - -0.8
544,091 - -1.1
544,091 - +0.4
544,091 - +0.2
544,091 - -0.6
544,091 - +0.1
544,337 - OH686_02555 0.33 +0.5
544,852 + -2.3
544,863 + -0.3
544,863 + +0.9
544,864 - -0.3
544,864 - +1.0
544,864 - -0.6
544,864 - -1.0
544,916 + -1.1
544,916 + +0.2
544,916 + -1.6
544,916 + -1.0
544,916 + +0.2
544,916 + +0.3
544,916 + +2.6
544,916 + -1.1
544,917 - +0.7
544,917 - +1.7
544,917 - -0.7
544,917 - -0.5
544,917 - -0.5
544,917 - +0.1
544,917 - +0.1
544,917 - +0.6
544,917 - -1.3
544,917 - +0.3
544,973 + -0.0
545,048 + OH686_02560 0.12 -0.1
545,048 + OH686_02560 0.12 -2.5
545,048 + OH686_02560 0.12 -0.0
545,049 - OH686_02560 0.12 -1.0
545,066 + OH686_02560 0.13 -2.3
545,066 + OH686_02560 0.13 +0.2
545,066 + OH686_02560 0.13 -1.6
545,067 - OH686_02560 0.14 +0.6
545,067 - OH686_02560 0.14 -2.9
545,067 - OH686_02560 0.14 +1.0
545,132 + OH686_02560 0.18 +1.7
545,132 + OH686_02560 0.18 -0.2
545,150 + OH686_02560 0.20 -0.1
545,150 + OH686_02560 0.20 +1.1
545,150 + OH686_02560 0.20 -1.9
545,151 - OH686_02560 0.20 +0.4
545,168 + OH686_02560 0.21 -2.2
545,168 + OH686_02560 0.21 -0.4
545,168 + OH686_02560 0.21 +0.6
545,168 + OH686_02560 0.21 +0.4
545,311 + OH686_02560 0.32 -2.8
545,423 + OH686_02560 0.41 -0.6
545,423 + OH686_02560 0.41 +0.8
545,423 + OH686_02560 0.41 -1.6
545,424 - OH686_02560 0.41 +0.7
545,579 + OH686_02560 0.52 -0.8
545,579 + OH686_02560 0.52 +2.0
545,579 + OH686_02560 0.52 +0.5
545,579 + OH686_02560 0.52 +0.6
545,579 + OH686_02560 0.52 -0.2
545,579 + OH686_02560 0.52 -0.5
545,579 + OH686_02560 0.52 +1.4
545,580 - OH686_02560 0.52 +0.4
545,580 - OH686_02560 0.52 +0.9
545,580 - OH686_02560 0.52 +0.2
545,580 - OH686_02560 0.52 -0.3
545,580 - OH686_02560 0.52 +0.9
545,580 - OH686_02560 0.52 +0.1
545,615 + OH686_02560 0.55 -0.2
545,615 + OH686_02560 0.55 +1.2
545,615 + OH686_02560 0.55 -2.2
545,616 - OH686_02560 0.55 +0.9
545,616 - OH686_02560 0.55 +0.6
545,616 - OH686_02560 0.55 +0.0
545,616 - OH686_02560 0.55 +1.6
545,664 + OH686_02560 0.59 -0.0
545,664 + OH686_02560 0.59 +0.2
545,665 - OH686_02560 0.59 -3.0
545,666 + OH686_02560 0.59 -0.4
545,666 + OH686_02560 0.59 +1.1
545,666 + OH686_02560 0.59 +0.8
545,666 + OH686_02560 0.59 -0.6
545,666 + OH686_02560 0.59 -0.3
545,666 + OH686_02560 0.59 +0.2
545,666 + OH686_02560 0.59 -1.2
545,666 + OH686_02560 0.59 -4.2
545,666 + OH686_02560 0.59 -1.8
545,666 + OH686_02560 0.59 +0.0
545,666 + OH686_02560 0.59 -2.3
545,666 + OH686_02560 0.59 +0.8
545,666 + OH686_02560 0.59 -0.5
545,666 + OH686_02560 0.59 +1.3
545,667 - OH686_02560 0.59 -0.4
545,667 - OH686_02560 0.59 +0.4
545,667 - OH686_02560 0.59 -1.4
545,667 - OH686_02560 0.59 -0.2
545,667 - OH686_02560 0.59 +2.2
545,667 - OH686_02560 0.59 -2.2
545,667 - OH686_02560 0.59 -0.2
545,667 - OH686_02560 0.59 -0.3
545,693 + OH686_02560 0.61 -0.0
545,693 + OH686_02560 0.61 -1.5
545,693 + OH686_02560 0.61 -2.5
545,694 - OH686_02560 0.61 -1.2
545,694 - OH686_02560 0.61 -1.8
545,694 - OH686_02560 0.61 -0.0
545,814 + OH686_02560 0.70 -0.1
545,815 - OH686_02560 0.70 -0.8
545,874 - OH686_02560 0.75 +1.3

Or see this region's nucleotide sequence