Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12645

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS12640 and ABIE41_RS12645 are separated by 58 nucleotidesABIE41_RS12645 and ABIE41_RS12650 are separated by 9 nucleotidesABIE41_RS12650 and ABIE41_RS12655 are separated by 88 nucleotides ABIE41_RS12640: ABIE41_RS12640 - outer membrane protein assembly factor BamD, at 2,592,225 to 2,593,166 _RS12640 ABIE41_RS12645: ABIE41_RS12645 - DNA repair protein RecN, at 2,593,225 to 2,594,910 _RS12645 ABIE41_RS12650: ABIE41_RS12650 - MBL fold metallo-hydrolase, at 2,594,920 to 2,595,747 _RS12650 ABIE41_RS12655: ABIE41_RS12655 - hypothetical protein, at 2,595,836 to 2,596,207 _RS12655 Position (kb) 2593 2594 2595Strain fitness (log2 ratio) -2 -1 0 1at 2593.873 kb on - strand, within ABIE41_RS12645at 2593.873 kb on - strand, within ABIE41_RS12645at 2594.098 kb on + strand, within ABIE41_RS12645at 2594.098 kb on + strand, within ABIE41_RS12645at 2594.098 kb on + strand, within ABIE41_RS12645at 2594.164 kb on + strand, within ABIE41_RS12645at 2594.164 kb on + strand, within ABIE41_RS12645at 2594.164 kb on + strand, within ABIE41_RS12645at 2594.165 kb on - strand, within ABIE41_RS12645at 2594.290 kb on + strand, within ABIE41_RS12645at 2594.290 kb on + strand, within ABIE41_RS12645at 2594.290 kb on + strand, within ABIE41_RS12645at 2594.290 kb on + strand, within ABIE41_RS12645at 2594.291 kb on - strand, within ABIE41_RS12645at 2594.291 kb on - strand, within ABIE41_RS12645at 2594.908 kb on + strandat 2595.153 kb on + strand, within ABIE41_RS12650at 2595.153 kb on + strand, within ABIE41_RS12650at 2595.154 kb on - strand, within ABIE41_RS12650at 2595.168 kb on - strand, within ABIE41_RS12650at 2595.186 kb on + strand, within ABIE41_RS12650at 2595.478 kb on - strand, within ABIE41_RS12650at 2595.490 kb on + strand, within ABIE41_RS12650at 2595.512 kb on + strand, within ABIE41_RS12650at 2595.513 kb on - strand, within ABIE41_RS12650at 2595.687 kb on - strandat 2595.716 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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2,593,873 - ABIE41_RS12645 0.38 -1.5
2,593,873 - ABIE41_RS12645 0.38 -0.7
2,594,098 + ABIE41_RS12645 0.52 +0.2
2,594,098 + ABIE41_RS12645 0.52 +1.0
2,594,098 + ABIE41_RS12645 0.52 -1.7
2,594,164 + ABIE41_RS12645 0.56 -0.9
2,594,164 + ABIE41_RS12645 0.56 -0.6
2,594,164 + ABIE41_RS12645 0.56 -1.2
2,594,165 - ABIE41_RS12645 0.56 -0.2
2,594,290 + ABIE41_RS12645 0.63 -2.4
2,594,290 + ABIE41_RS12645 0.63 -1.7
2,594,290 + ABIE41_RS12645 0.63 -1.0
2,594,290 + ABIE41_RS12645 0.63 -0.4
2,594,291 - ABIE41_RS12645 0.63 -2.2
2,594,291 - ABIE41_RS12645 0.63 -0.4
2,594,908 + -0.5
2,595,153 + ABIE41_RS12650 0.28 +0.0
2,595,153 + ABIE41_RS12650 0.28 -1.0
2,595,154 - ABIE41_RS12650 0.28 -0.3
2,595,168 - ABIE41_RS12650 0.30 -1.2
2,595,186 + ABIE41_RS12650 0.32 -2.6
2,595,478 - ABIE41_RS12650 0.67 -0.0
2,595,490 + ABIE41_RS12650 0.69 +0.6
2,595,512 + ABIE41_RS12650 0.71 +0.3
2,595,513 - ABIE41_RS12650 0.72 -1.9
2,595,687 - +1.0
2,595,716 + +0.0

Or see this region's nucleotide sequence