Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08515 and ABIE41_RS08520 are separated by 489 nucleotides ABIE41_RS08520 and ABIE41_RS08525 are separated by 149 nucleotides ABIE41_RS08525 and ABIE41_RS08530 are separated by 260 nucleotides
ABIE41_RS08515: ABIE41_RS08515 - MATE family efflux transporter, at 1,756,564 to 1,757,949
_RS08515
ABIE41_RS08520: ABIE41_RS08520 - tRNA-Val, at 1,758,439 to 1,758,513
_RS08520
ABIE41_RS08525: ABIE41_RS08525 - cell cycle two-component system response regulator CpdR, at 1,758,663 to 1,759,022
_RS08525
ABIE41_RS08530: ABIE41_RS08530 - N-formylglutamate amidohydrolase, at 1,759,283 to 1,760,203
_RS08530
Position (kb) 1758
1759
1760 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1757.783 kb on + strand, within ABIE41_RS08515 at 1757.784 kb on - strand, within ABIE41_RS08515 at 1757.784 kb on - strand, within ABIE41_RS08515 at 1757.784 kb on - strand, within ABIE41_RS08515 at 1757.784 kb on - strand, within ABIE41_RS08515 at 1757.997 kb on - strand at 1757.997 kb on - strand at 1758.322 kb on - strand at 1758.595 kb on - strand at 1759.180 kb on - strand at 1759.180 kb on - strand at 1759.180 kb on - strand at 1759.180 kb on - strand at 1759.238 kb on + strand at 1759.239 kb on - strand at 1759.239 kb on - strand at 1759.358 kb on + strand at 1759.358 kb on + strand at 1759.358 kb on + strand at 1759.358 kb on + strand at 1759.358 kb on + strand at 1759.359 kb on - strand at 1759.484 kb on + strand, within ABIE41_RS08530 at 1759.484 kb on + strand, within ABIE41_RS08530 at 1759.484 kb on + strand, within ABIE41_RS08530 at 1759.484 kb on + strand, within ABIE41_RS08530 at 1759.485 kb on - strand, within ABIE41_RS08530 at 1759.580 kb on + strand, within ABIE41_RS08530 at 1759.581 kb on - strand, within ABIE41_RS08530 at 1759.581 kb on - strand, within ABIE41_RS08530 at 1759.700 kb on + strand, within ABIE41_RS08530 at 1759.700 kb on + strand, within ABIE41_RS08530 at 1759.700 kb on + strand, within ABIE41_RS08530 at 1759.700 kb on + strand, within ABIE41_RS08530 at 1759.700 kb on + strand, within ABIE41_RS08530 at 1759.700 kb on + strand, within ABIE41_RS08530 at 1759.701 kb on - strand, within ABIE41_RS08530 at 1759.701 kb on - strand, within ABIE41_RS08530 at 1759.701 kb on - strand, within ABIE41_RS08530 at 1759.701 kb on - strand, within ABIE41_RS08530 at 1759.752 kb on - strand, within ABIE41_RS08530 at 1759.774 kb on - strand, within ABIE41_RS08530 at 1759.922 kb on + strand, within ABIE41_RS08530 at 1759.923 kb on - strand, within ABIE41_RS08530 at 1759.923 kb on - strand, within ABIE41_RS08530 at 1759.988 kb on + strand, within ABIE41_RS08530 at 1759.989 kb on - strand, within ABIE41_RS08530 at 1759.989 kb on - strand, within ABIE41_RS08530 at 1760.015 kb on + strand, within ABIE41_RS08530 at 1760.015 kb on - strand, within ABIE41_RS08530 at 1760.016 kb on - strand, within ABIE41_RS08530
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 1,757,783 + ABIE41_RS08515 0.88 +1.0 1,757,784 - ABIE41_RS08515 0.88 -0.0 1,757,784 - ABIE41_RS08515 0.88 -2.2 1,757,784 - ABIE41_RS08515 0.88 +0.4 1,757,784 - ABIE41_RS08515 0.88 +1.0 1,757,997 - +0.9 1,757,997 - -0.1 1,758,322 - +1.0 1,758,595 - -0.1 1,759,180 - +1.1 1,759,180 - -0.0 1,759,180 - +0.4 1,759,180 - +0.6 1,759,238 + +0.4 1,759,239 - -0.1 1,759,239 - -1.5 1,759,358 + -0.1 1,759,358 + -0.1 1,759,358 + -1.6 1,759,358 + -0.4 1,759,358 + +0.3 1,759,359 - -1.5 1,759,484 + ABIE41_RS08530 0.22 +0.4 1,759,484 + ABIE41_RS08530 0.22 +3.0 1,759,484 + ABIE41_RS08530 0.22 +0.6 1,759,484 + ABIE41_RS08530 0.22 -0.2 1,759,485 - ABIE41_RS08530 0.22 +0.2 1,759,580 + ABIE41_RS08530 0.32 +0.2 1,759,581 - ABIE41_RS08530 0.32 -0.1 1,759,581 - ABIE41_RS08530 0.32 +0.7 1,759,700 + ABIE41_RS08530 0.45 -1.0 1,759,700 + ABIE41_RS08530 0.45 +0.5 1,759,700 + ABIE41_RS08530 0.45 -0.4 1,759,700 + ABIE41_RS08530 0.45 -1.4 1,759,700 + ABIE41_RS08530 0.45 +0.0 1,759,700 + ABIE41_RS08530 0.45 +1.6 1,759,701 - ABIE41_RS08530 0.45 +0.4 1,759,701 - ABIE41_RS08530 0.45 +0.8 1,759,701 - ABIE41_RS08530 0.45 -0.5 1,759,701 - ABIE41_RS08530 0.45 -0.1 1,759,752 - ABIE41_RS08530 0.51 -0.5 1,759,774 - ABIE41_RS08530 0.53 +3.3 1,759,922 + ABIE41_RS08530 0.69 +2.3 1,759,923 - ABIE41_RS08530 0.69 +0.2 1,759,923 - ABIE41_RS08530 0.69 +0.3 1,759,988 + ABIE41_RS08530 0.77 +0.5 1,759,989 - ABIE41_RS08530 0.77 +0.9 1,759,989 - ABIE41_RS08530 0.77 -0.2 1,760,015 + ABIE41_RS08530 0.79 +0.9 1,760,015 - ABIE41_RS08530 0.79 +0.1 1,760,016 - ABIE41_RS08530 0.80 +0.5
Or see this region's nucleotide sequence