Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04580 and ABIE41_RS04585 overlap by 1 nucleotides ABIE41_RS04585 and ABIE41_RS04590 are separated by 225 nucleotides ABIE41_RS04590 and ABIE41_RS04595 are separated by 266 nucleotides ABIE41_RS04595 and ABIE41_RS04600 are separated by 197 nucleotides ABIE41_RS04600 and ABIE41_RS04605 are separated by 123 nucleotides
ABIE41_RS04580: ABIE41_RS04580 - Ku protein, at 956,094 to 956,999
_RS04580
ABIE41_RS04585: ABIE41_RS04585 - hypothetical protein, at 956,999 to 957,223
_RS04585
ABIE41_RS04590: ABIE41_RS04590 - 30S ribosomal protein S15, at 957,449 to 957,718
_RS04590
ABIE41_RS04595: ABIE41_RS04595 - polyribonucleotide nucleotidyltransferase, at 957,985 to 960,153
_RS04595
ABIE41_RS04600: ABIE41_RS04600 - pyridoxamine 5'-phosphate oxidase family protein, at 960,351 to 960,986
_RS04600
ABIE41_RS04605: ABIE41_RS04605 - adenosine kinase, at 961,110 to 962,108
_RS04605
Position (kb) 957
958
959
960
961 Strain fitness (log2 ratio) -1
0
1 at 957.315 kb on + strand at 960.273 kb on - strand at 960.273 kb on - strand at 960.456 kb on + strand, within ABIE41_RS04600 at 960.456 kb on + strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.795 kb on + strand, within ABIE41_RS04600 at 960.795 kb on + strand, within ABIE41_RS04600 at 960.795 kb on + strand, within ABIE41_RS04600 at 960.795 kb on + strand, within ABIE41_RS04600 at 960.796 kb on - strand, within ABIE41_RS04600 at 960.942 kb on + strand at 960.981 kb on + strand at 960.981 kb on + strand at 960.981 kb on + strand at 960.982 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 957,315 + -0.2 960,273 - -0.2 960,273 - +0.4 960,456 + ABIE41_RS04600 0.17 +1.4 960,456 + ABIE41_RS04600 0.17 -0.6 960,457 - ABIE41_RS04600 0.17 +0.1 960,457 - ABIE41_RS04600 0.17 +0.8 960,457 - ABIE41_RS04600 0.17 +1.0 960,457 - ABIE41_RS04600 0.17 +0.2 960,457 - ABIE41_RS04600 0.17 +1.4 960,457 - ABIE41_RS04600 0.17 +1.2 960,457 - ABIE41_RS04600 0.17 +0.7 960,457 - ABIE41_RS04600 0.17 -0.1 960,795 + ABIE41_RS04600 0.70 +0.1 960,795 + ABIE41_RS04600 0.70 -1.4 960,795 + ABIE41_RS04600 0.70 +0.4 960,795 + ABIE41_RS04600 0.70 +0.4 960,796 - ABIE41_RS04600 0.70 -0.2 960,942 + -0.9 960,981 + -0.4 960,981 + -0.2 960,981 + +0.1 960,982 - -0.6
Or see this region's nucleotide sequence