Strain Fitness in Bosea sp. OAE506 around ABIE41_RS03955

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS03945 and ABIE41_RS03950 are separated by 173 nucleotidesABIE41_RS03950 and ABIE41_RS03955 overlap by 13 nucleotidesABIE41_RS03955 and ABIE41_RS03960 overlap by 4 nucleotidesABIE41_RS03960 and ABIE41_RS03965 are separated by 12 nucleotides ABIE41_RS03945: ABIE41_RS03945 - aldo/keto reductase, at 821,426 to 822,271 _RS03945 ABIE41_RS03950: ABIE41_RS03950 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 822,445 to 823,185 _RS03950 ABIE41_RS03955: ABIE41_RS03955 - imidazole glycerol phosphate synthase subunit HisH, at 823,173 to 823,829 _RS03955 ABIE41_RS03960: ABIE41_RS03960 - DUF2628 domain-containing protein, at 823,826 to 824,311 _RS03960 ABIE41_RS03965: ABIE41_RS03965 - imidazoleglycerol-phosphate dehydratase HisB, at 824,324 to 824,911 _RS03965 Position (kb) 823 824Strain fitness (log2 ratio) -3 -2 -1 0 1at 822.269 kb on + strandat 822.269 kb on + strandat 822.348 kb on - strandat 822.348 kb on - strandat 822.348 kb on - strandat 822.348 kb on - strandat 822.348 kb on - strandat 822.348 kb on - strandat 822.421 kb on - strandat 822.421 kb on - strandat 822.421 kb on - strandat 822.500 kb on + strandat 822.683 kb on + strand, within ABIE41_RS03950at 823.342 kb on + strand, within ABIE41_RS03955at 823.342 kb on + strand, within ABIE41_RS03955at 823.342 kb on + strand, within ABIE41_RS03955at 823.343 kb on - strand, within ABIE41_RS03955at 823.343 kb on - strand, within ABIE41_RS03955at 823.343 kb on - strand, within ABIE41_RS03955at 823.357 kb on + strand, within ABIE41_RS03955at 823.358 kb on - strand, within ABIE41_RS03955at 823.427 kb on + strand, within ABIE41_RS03955at 823.427 kb on + strand, within ABIE41_RS03955at 823.439 kb on + strand, within ABIE41_RS03955at 823.439 kb on + strand, within ABIE41_RS03955at 823.523 kb on - strand, within ABIE41_RS03955at 823.523 kb on - strand, within ABIE41_RS03955at 824.018 kb on + strand, within ABIE41_RS03960at 824.019 kb on - strand, within ABIE41_RS03960at 824.019 kb on - strand, within ABIE41_RS03960at 824.124 kb on + strand, within ABIE41_RS03960at 824.125 kb on - strand, within ABIE41_RS03960at 824.151 kb on + strand, within ABIE41_RS03960at 824.151 kb on + strand, within ABIE41_RS03960at 824.151 kb on + strand, within ABIE41_RS03960at 824.151 kb on + strand, within ABIE41_RS03960at 824.151 kb on + strand, within ABIE41_RS03960at 824.151 kb on + strand, within ABIE41_RS03960at 824.151 kb on + strand, within ABIE41_RS03960at 824.151 kb on + strand, within ABIE41_RS03960at 824.152 kb on - strand, within ABIE41_RS03960at 824.152 kb on - strand, within ABIE41_RS03960at 824.152 kb on - strand, within ABIE41_RS03960at 824.152 kb on - strand, within ABIE41_RS03960at 824.152 kb on - strand, within ABIE41_RS03960at 824.152 kb on - strand, within ABIE41_RS03960at 824.301 kb on + strandat 824.301 kb on + strandat 824.302 kb on - strandat 824.302 kb on - strandat 824.302 kb on - strandat 824.640 kb on + strand, within ABIE41_RS03965at 824.797 kb on + strand, within ABIE41_RS03965at 824.798 kb on - strand, within ABIE41_RS03965

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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822,269 + -0.8
822,269 + +0.0
822,348 - +1.0
822,348 - +0.4
822,348 - -0.2
822,348 - +0.6
822,348 - -0.3
822,348 - -2.0
822,421 - +0.5
822,421 - +0.0
822,421 - +0.7
822,500 + -0.5
822,683 + ABIE41_RS03950 0.32 -0.2
823,342 + ABIE41_RS03955 0.26 +0.7
823,342 + ABIE41_RS03955 0.26 -1.2
823,342 + ABIE41_RS03955 0.26 -1.5
823,343 - ABIE41_RS03955 0.26 +0.5
823,343 - ABIE41_RS03955 0.26 +1.5
823,343 - ABIE41_RS03955 0.26 -1.3
823,357 + ABIE41_RS03955 0.28 -1.0
823,358 - ABIE41_RS03955 0.28 -1.3
823,427 + ABIE41_RS03955 0.39 -0.4
823,427 + ABIE41_RS03955 0.39 -1.0
823,439 + ABIE41_RS03955 0.40 +0.7
823,439 + ABIE41_RS03955 0.40 -1.7
823,523 - ABIE41_RS03955 0.53 -3.7
823,523 - ABIE41_RS03955 0.53 -1.0
824,018 + ABIE41_RS03960 0.40 -0.6
824,019 - ABIE41_RS03960 0.40 +0.2
824,019 - ABIE41_RS03960 0.40 +0.4
824,124 + ABIE41_RS03960 0.61 -1.0
824,125 - ABIE41_RS03960 0.62 -0.0
824,151 + ABIE41_RS03960 0.67 -1.1
824,151 + ABIE41_RS03960 0.67 -1.3
824,151 + ABIE41_RS03960 0.67 -1.0
824,151 + ABIE41_RS03960 0.67 -1.5
824,151 + ABIE41_RS03960 0.67 -1.4
824,151 + ABIE41_RS03960 0.67 -1.8
824,151 + ABIE41_RS03960 0.67 +1.1
824,151 + ABIE41_RS03960 0.67 +0.9
824,152 - ABIE41_RS03960 0.67 -1.8
824,152 - ABIE41_RS03960 0.67 +0.0
824,152 - ABIE41_RS03960 0.67 -0.2
824,152 - ABIE41_RS03960 0.67 -0.3
824,152 - ABIE41_RS03960 0.67 +0.8
824,152 - ABIE41_RS03960 0.67 +1.1
824,301 + -0.1
824,301 + -1.7
824,302 - +0.4
824,302 - -2.1
824,302 - +0.0
824,640 + ABIE41_RS03965 0.54 -1.3
824,797 + ABIE41_RS03965 0.80 -0.8
824,798 - ABIE41_RS03965 0.81 -0.6

Or see this region's nucleotide sequence