Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01560

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01550 and ABIE41_RS01555 overlap by 4 nucleotidesABIE41_RS01555 and ABIE41_RS01560 overlap by 20 nucleotidesABIE41_RS01560 and ABIE41_RS01565 are separated by 5 nucleotidesABIE41_RS01565 and ABIE41_RS01570 overlap by 4 nucleotides ABIE41_RS01550: ABIE41_RS01550 - (2Fe-2S)-binding protein, at 309,090 to 310,538 _RS01550 ABIE41_RS01555: ABIE41_RS01555 - (2Fe-2S)-binding protein, at 310,535 to 310,843 _RS01555 ABIE41_RS01560: ABIE41_RS01560 - FAD-dependent oxidoreductase, at 310,824 to 311,957 _RS01560 ABIE41_RS01565: ABIE41_RS01565 - ABC transporter permease, at 311,963 to 312,763 _RS01565 ABIE41_RS01570: ABIE41_RS01570 - ABC transporter permease, at 312,760 to 313,626 _RS01570 Position (kb) 310 311 312Strain fitness (log2 ratio) -2 -1 0 1 2at 309.896 kb on - strand, within ABIE41_RS01550at 309.928 kb on - strand, within ABIE41_RS01550at 309.929 kb on + strand, within ABIE41_RS01550at 309.930 kb on - strand, within ABIE41_RS01550at 310.015 kb on + strand, within ABIE41_RS01550at 310.015 kb on + strand, within ABIE41_RS01550at 310.016 kb on - strand, within ABIE41_RS01550at 310.016 kb on - strand, within ABIE41_RS01550at 310.016 kb on - strand, within ABIE41_RS01550at 310.016 kb on - strand, within ABIE41_RS01550at 310.276 kb on + strand, within ABIE41_RS01550at 310.327 kb on + strand, within ABIE41_RS01550at 310.327 kb on + strand, within ABIE41_RS01550at 310.327 kb on + strand, within ABIE41_RS01550at 310.327 kb on + strand, within ABIE41_RS01550at 310.327 kb on + strand, within ABIE41_RS01550at 310.328 kb on - strand, within ABIE41_RS01550at 310.382 kb on - strand, within ABIE41_RS01550at 310.493 kb on + strandat 310.498 kb on + strandat 310.498 kb on + strandat 310.499 kb on - strandat 310.499 kb on - strandat 310.677 kb on + strand, within ABIE41_RS01555at 310.677 kb on + strand, within ABIE41_RS01555at 310.678 kb on - strand, within ABIE41_RS01555at 310.678 kb on - strand, within ABIE41_RS01555at 310.993 kb on + strand, within ABIE41_RS01560at 310.993 kb on + strand, within ABIE41_RS01560at 310.994 kb on - strand, within ABIE41_RS01560at 310.994 kb on - strand, within ABIE41_RS01560at 310.994 kb on - strand, within ABIE41_RS01560at 311.051 kb on + strand, within ABIE41_RS01560at 311.494 kb on + strand, within ABIE41_RS01560at 311.494 kb on + strand, within ABIE41_RS01560at 311.495 kb on - strand, within ABIE41_RS01560at 311.495 kb on - strand, within ABIE41_RS01560at 311.758 kb on + strand, within ABIE41_RS01560at 312.083 kb on - strand, within ABIE41_RS01565at 312.096 kb on + strand, within ABIE41_RS01565at 312.096 kb on + strand, within ABIE41_RS01565at 312.097 kb on - strand, within ABIE41_RS01565at 312.097 kb on - strand, within ABIE41_RS01565at 312.304 kb on - strand, within ABIE41_RS01565at 312.304 kb on - strand, within ABIE41_RS01565at 312.495 kb on + strand, within ABIE41_RS01565at 312.600 kb on + strand, within ABIE41_RS01565at 312.600 kb on + strand, within ABIE41_RS01565at 312.657 kb on + strand, within ABIE41_RS01565at 312.657 kb on + strand, within ABIE41_RS01565at 312.657 kb on + strand, within ABIE41_RS01565at 312.658 kb on - strand, within ABIE41_RS01565at 312.658 kb on - strand, within ABIE41_RS01565at 312.658 kb on - strand, within ABIE41_RS01565at 312.658 kb on - strand, within ABIE41_RS01565at 312.780 kb on - strandat 312.893 kb on + strand, within ABIE41_RS01570at 312.893 kb on + strand, within ABIE41_RS01570at 312.894 kb on - strand, within ABIE41_RS01570

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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309,896 - ABIE41_RS01550 0.56 +0.2
309,928 - ABIE41_RS01550 0.58 -0.5
309,929 + ABIE41_RS01550 0.58 -0.5
309,930 - ABIE41_RS01550 0.58 -0.9
310,015 + ABIE41_RS01550 0.64 -0.4
310,015 + ABIE41_RS01550 0.64 +0.1
310,016 - ABIE41_RS01550 0.64 +0.6
310,016 - ABIE41_RS01550 0.64 +0.6
310,016 - ABIE41_RS01550 0.64 +1.4
310,016 - ABIE41_RS01550 0.64 -2.5
310,276 + ABIE41_RS01550 0.82 +1.4
310,327 + ABIE41_RS01550 0.85 -0.1
310,327 + ABIE41_RS01550 0.85 +0.7
310,327 + ABIE41_RS01550 0.85 -0.2
310,327 + ABIE41_RS01550 0.85 -0.1
310,327 + ABIE41_RS01550 0.85 +0.6
310,328 - ABIE41_RS01550 0.85 -0.5
310,382 - ABIE41_RS01550 0.89 -0.1
310,493 + +0.3
310,498 + -0.1
310,498 + +0.2
310,499 - -0.4
310,499 - -0.4
310,677 + ABIE41_RS01555 0.46 +0.7
310,677 + ABIE41_RS01555 0.46 +1.4
310,678 - ABIE41_RS01555 0.46 -1.0
310,678 - ABIE41_RS01555 0.46 +0.7
310,993 + ABIE41_RS01560 0.15 +0.9
310,993 + ABIE41_RS01560 0.15 +0.4
310,994 - ABIE41_RS01560 0.15 +0.7
310,994 - ABIE41_RS01560 0.15 +0.5
310,994 - ABIE41_RS01560 0.15 +0.2
311,051 + ABIE41_RS01560 0.20 +0.3
311,494 + ABIE41_RS01560 0.59 -1.4
311,494 + ABIE41_RS01560 0.59 +0.0
311,495 - ABIE41_RS01560 0.59 +0.4
311,495 - ABIE41_RS01560 0.59 +2.0
311,758 + ABIE41_RS01560 0.82 +0.4
312,083 - ABIE41_RS01565 0.15 -0.3
312,096 + ABIE41_RS01565 0.17 +0.8
312,096 + ABIE41_RS01565 0.17 +0.4
312,097 - ABIE41_RS01565 0.17 +0.1
312,097 - ABIE41_RS01565 0.17 -0.3
312,304 - ABIE41_RS01565 0.43 -0.1
312,304 - ABIE41_RS01565 0.43 -0.6
312,495 + ABIE41_RS01565 0.66 -1.1
312,600 + ABIE41_RS01565 0.80 -0.4
312,600 + ABIE41_RS01565 0.80 -1.9
312,657 + ABIE41_RS01565 0.87 -2.0
312,657 + ABIE41_RS01565 0.87 -0.4
312,657 + ABIE41_RS01565 0.87 -0.6
312,658 - ABIE41_RS01565 0.87 -0.4
312,658 - ABIE41_RS01565 0.87 -0.5
312,658 - ABIE41_RS01565 0.87 -0.0
312,658 - ABIE41_RS01565 0.87 -0.4
312,780 - -0.5
312,893 + ABIE41_RS01570 0.15 +0.5
312,893 + ABIE41_RS01570 0.15 -2.4
312,894 - ABIE41_RS01570 0.15 +0.6

Or see this region's nucleotide sequence