Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30910 and ABIE40_RS30915 are separated by 462 nucleotides ABIE40_RS30915 and ABIE40_RS30920 are separated by 6 nucleotides ABIE40_RS30920 and ABIE40_RS30925 are separated by 140 nucleotides ABIE40_RS30925 and ABIE40_RS30930 are separated by 488 nucleotides
ABIE40_RS30910: ABIE40_RS30910 - ubiquinol oxidase subunit II, at 875,245 to 876,138
_RS30910
ABIE40_RS30915: ABIE40_RS30915 - hypothetical protein, at 876,601 to 876,729
_RS30915
ABIE40_RS30920: ABIE40_RS30920 - glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase, at 876,736 to 879,081
_RS30920
ABIE40_RS30925: ABIE40_RS30925 - hypothetical protein, at 879,222 to 879,485
_RS30925
ABIE40_RS30930: ABIE40_RS30930 - Gfo/Idh/MocA family oxidoreductase, at 879,974 to 881,017
_RS30930
Position (kb) 876
877
878
879
880 Strain fitness (log2 ratio) -2
-1
0
1
2 at 875.736 kb on - strand, within ABIE40_RS30910 at 875.740 kb on - strand, within ABIE40_RS30910 at 875.860 kb on + strand, within ABIE40_RS30910 at 875.909 kb on + strand, within ABIE40_RS30910 at 876.126 kb on + strand at 876.126 kb on + strand at 876.127 kb on - strand at 876.210 kb on - strand at 876.260 kb on + strand at 876.391 kb on - strand at 876.391 kb on - strand at 876.556 kb on + strand at 876.618 kb on + strand, within ABIE40_RS30915 at 876.728 kb on - strand at 876.728 kb on - strand at 876.744 kb on + strand at 876.744 kb on + strand at 876.745 kb on - strand at 876.745 kb on - strand at 876.745 kb on - strand at 876.745 kb on - strand at 876.749 kb on + strand at 876.750 kb on - strand at 876.765 kb on + strand at 876.908 kb on - strand at 877.072 kb on + strand, within ABIE40_RS30920 at 877.240 kb on + strand, within ABIE40_RS30920 at 877.327 kb on + strand, within ABIE40_RS30920 at 877.376 kb on - strand, within ABIE40_RS30920 at 877.411 kb on + strand, within ABIE40_RS30920 at 877.411 kb on + strand, within ABIE40_RS30920 at 877.428 kb on + strand, within ABIE40_RS30920 at 877.537 kb on + strand, within ABIE40_RS30920 at 877.589 kb on - strand, within ABIE40_RS30920 at 877.714 kb on + strand, within ABIE40_RS30920 at 877.783 kb on + strand, within ABIE40_RS30920 at 877.967 kb on - strand, within ABIE40_RS30920 at 878.583 kb on + strand, within ABIE40_RS30920 at 878.650 kb on + strand, within ABIE40_RS30920 at 878.755 kb on + strand, within ABIE40_RS30920 at 878.888 kb on - strand at 878.888 kb on - strand at 878.972 kb on - strand at 878.972 kb on - strand at 878.974 kb on - strand at 878.974 kb on - strand at 878.974 kb on - strand at 878.974 kb on - strand at 879.049 kb on + strand at 879.049 kb on + strand at 879.063 kb on + strand at 879.063 kb on + strand at 879.063 kb on + strand at 879.063 kb on + strand at 879.063 kb on + strand at 879.063 kb on + strand at 879.063 kb on + strand at 879.064 kb on - strand at 879.064 kb on - strand at 879.064 kb on - strand at 879.068 kb on + strand at 879.068 kb on + strand at 879.176 kb on - strand at 879.390 kb on + strand, within ABIE40_RS30925 at 879.622 kb on - strand at 879.912 kb on - strand at 879.962 kb on + strand at 879.963 kb on - strand at 880.002 kb on + strand at 880.009 kb on + strand at 880.009 kb on + strand at 880.010 kb on - strand at 880.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 875,736 - ABIE40_RS30910 0.55 -0.4 875,740 - ABIE40_RS30910 0.55 +1.2 875,860 + ABIE40_RS30910 0.69 -1.4 875,909 + ABIE40_RS30910 0.74 -0.5 876,126 + +0.9 876,126 + +0.1 876,127 - +0.6 876,210 - +1.2 876,260 + +0.7 876,391 - -0.5 876,391 - -0.3 876,556 + +1.3 876,618 + ABIE40_RS30915 0.13 -0.1 876,728 - -0.2 876,728 - +0.3 876,744 + +0.9 876,744 + +0.3 876,745 - -0.8 876,745 - -0.5 876,745 - -0.8 876,745 - +0.8 876,749 + -0.0 876,750 - -1.6 876,765 + -2.4 876,908 - -1.4 877,072 + ABIE40_RS30920 0.14 -0.6 877,240 + ABIE40_RS30920 0.21 -0.8 877,327 + ABIE40_RS30920 0.25 -0.1 877,376 - ABIE40_RS30920 0.27 -1.4 877,411 + ABIE40_RS30920 0.29 -1.1 877,411 + ABIE40_RS30920 0.29 +0.4 877,428 + ABIE40_RS30920 0.29 -2.1 877,537 + ABIE40_RS30920 0.34 +1.3 877,589 - ABIE40_RS30920 0.36 -0.2 877,714 + ABIE40_RS30920 0.42 -1.2 877,783 + ABIE40_RS30920 0.45 -0.7 877,967 - ABIE40_RS30920 0.52 +0.2 878,583 + ABIE40_RS30920 0.79 -0.6 878,650 + ABIE40_RS30920 0.82 -1.6 878,755 + ABIE40_RS30920 0.86 +0.1 878,888 - +0.9 878,888 - +0.5 878,972 - -1.9 878,972 - -1.2 878,974 - -1.8 878,974 - -0.7 878,974 - +0.4 878,974 - -1.2 879,049 + +0.2 879,049 + -0.5 879,063 + +1.5 879,063 + +2.3 879,063 + +0.9 879,063 + +0.5 879,063 + +0.9 879,063 + -0.5 879,063 + -0.8 879,064 - +0.5 879,064 - +0.1 879,064 - -0.1 879,068 + -1.0 879,068 + +2.0 879,176 - +0.1 879,390 + ABIE40_RS30925 0.64 -0.1 879,622 - -2.0 879,912 - +0.4 879,962 + -0.1 879,963 - +0.2 880,002 + -0.3 880,009 + -1.2 880,009 + +0.5 880,010 - +0.0 880,010 - +0.1
Or see this region's nucleotide sequence