Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30705 and ABIE40_RS30710 are separated by 12 nucleotides ABIE40_RS30710 and ABIE40_RS30715 are separated by 8 nucleotides ABIE40_RS30715 and ABIE40_RS30720 overlap by 47 nucleotides ABIE40_RS30720 and ABIE40_RS30725 are separated by 107 nucleotides ABIE40_RS30725 and ABIE40_RS30730 are separated by 7 nucleotides
ABIE40_RS30705: ABIE40_RS30705 - hypothetical protein, at 832,370 to 832,585
_RS30705
ABIE40_RS30710: ABIE40_RS30710 - hypothetical protein, at 832,598 to 832,774
_RS30710
ABIE40_RS30715: ABIE40_RS30715 - hypothetical protein, at 832,783 to 832,971
_RS30715
ABIE40_RS30720: ABIE40_RS30720 - hypothetical protein, at 832,925 to 833,455
_RS30720
ABIE40_RS30725: ABIE40_RS30725 - NADH-quinone oxidoreductase subunit C, at 833,563 to 834,186
_RS30725
ABIE40_RS30730: ABIE40_RS30730 - NADH-quinone oxidoreductase subunit D, at 834,194 to 835,381
_RS30730
Position (kb) 832
833
834 Strain fitness (log2 ratio) -2
-1
0
1
2 at 831.982 kb on + strand at 831.983 kb on - strand at 831.983 kb on - strand at 831.989 kb on - strand at 831.989 kb on - strand at 832.167 kb on + strand at 832.177 kb on - strand at 832.177 kb on - strand at 832.201 kb on + strand at 832.202 kb on - strand at 832.457 kb on - strand, within ABIE40_RS30705 at 832.492 kb on + strand, within ABIE40_RS30705 at 832.493 kb on - strand, within ABIE40_RS30705 at 832.551 kb on - strand, within ABIE40_RS30705 at 832.741 kb on + strand, within ABIE40_RS30710 at 832.758 kb on - strand at 832.782 kb on + strand at 832.783 kb on - strand at 832.783 kb on - strand at 832.797 kb on + strand at 832.798 kb on - strand at 832.969 kb on + strand at 832.970 kb on - strand at 833.141 kb on - strand, within ABIE40_RS30720 at 833.252 kb on - strand, within ABIE40_RS30720 at 833.414 kb on - strand at 833.465 kb on - strand at 833.538 kb on + strand at 833.574 kb on + strand at 833.598 kb on - strand at 833.598 kb on - strand at 833.598 kb on - strand at 833.598 kb on - strand at 833.649 kb on - strand, within ABIE40_RS30725 at 833.677 kb on - strand, within ABIE40_RS30725 at 833.678 kb on + strand, within ABIE40_RS30725 at 833.679 kb on - strand, within ABIE40_RS30725 at 833.785 kb on + strand, within ABIE40_RS30725 at 833.785 kb on + strand, within ABIE40_RS30725 at 833.786 kb on - strand, within ABIE40_RS30725 at 833.786 kb on - strand, within ABIE40_RS30725 at 833.786 kb on - strand, within ABIE40_RS30725 at 833.786 kb on - strand, within ABIE40_RS30725 at 833.786 kb on - strand, within ABIE40_RS30725 at 833.805 kb on + strand, within ABIE40_RS30725 at 833.805 kb on + strand, within ABIE40_RS30725 at 833.917 kb on + strand, within ABIE40_RS30725 at 833.917 kb on + strand, within ABIE40_RS30725 at 833.918 kb on - strand, within ABIE40_RS30725 at 833.918 kb on - strand, within ABIE40_RS30725 at 833.918 kb on - strand, within ABIE40_RS30725 at 833.990 kb on + strand, within ABIE40_RS30725 at 833.991 kb on - strand, within ABIE40_RS30725 at 833.991 kb on - strand, within ABIE40_RS30725 at 834.058 kb on + strand, within ABIE40_RS30725 at 834.127 kb on + strand at 834.127 kb on + strand at 834.128 kb on - strand at 834.128 kb on - strand at 834.128 kb on - strand at 834.128 kb on - strand at 834.129 kb on + strand at 834.130 kb on - strand at 834.202 kb on + strand at 834.203 kb on - strand at 834.203 kb on - strand at 834.203 kb on - strand at 834.313 kb on + strand, within ABIE40_RS30730 at 834.324 kb on + strand, within ABIE40_RS30730 at 834.362 kb on + strand, within ABIE40_RS30730 at 834.363 kb on - strand, within ABIE40_RS30730 at 834.398 kb on + strand, within ABIE40_RS30730 at 834.399 kb on - strand, within ABIE40_RS30730 at 834.428 kb on + strand, within ABIE40_RS30730 at 834.428 kb on + strand, within ABIE40_RS30730 at 834.428 kb on + strand, within ABIE40_RS30730
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 831,982 + +0.1 831,983 - -0.2 831,983 - -1.6 831,989 - +1.3 831,989 - +2.1 832,167 + +0.5 832,177 - +0.0 832,177 - -1.1 832,201 + -0.3 832,202 - +0.3 832,457 - ABIE40_RS30705 0.40 -0.1 832,492 + ABIE40_RS30705 0.56 +0.3 832,493 - ABIE40_RS30705 0.57 +0.2 832,551 - ABIE40_RS30705 0.84 +0.1 832,741 + ABIE40_RS30710 0.81 +1.9 832,758 - -0.3 832,782 + -0.7 832,783 - -0.2 832,783 - -1.2 832,797 + -0.2 832,798 - +0.2 832,969 + -0.3 832,970 - -0.7 833,141 - ABIE40_RS30720 0.41 +0.7 833,252 - ABIE40_RS30720 0.62 +1.3 833,414 - +0.1 833,465 - -0.2 833,538 + -0.3 833,574 + +0.3 833,598 - -0.4 833,598 - -0.2 833,598 - +0.3 833,598 - -0.7 833,649 - ABIE40_RS30725 0.14 +0.6 833,677 - ABIE40_RS30725 0.18 +0.1 833,678 + ABIE40_RS30725 0.18 -1.0 833,679 - ABIE40_RS30725 0.19 -0.5 833,785 + ABIE40_RS30725 0.36 -1.2 833,785 + ABIE40_RS30725 0.36 -0.2 833,786 - ABIE40_RS30725 0.36 -0.7 833,786 - ABIE40_RS30725 0.36 +0.2 833,786 - ABIE40_RS30725 0.36 -1.5 833,786 - ABIE40_RS30725 0.36 -0.7 833,786 - ABIE40_RS30725 0.36 +0.9 833,805 + ABIE40_RS30725 0.39 -2.1 833,805 + ABIE40_RS30725 0.39 +0.2 833,917 + ABIE40_RS30725 0.57 -0.1 833,917 + ABIE40_RS30725 0.57 +0.2 833,918 - ABIE40_RS30725 0.57 +0.9 833,918 - ABIE40_RS30725 0.57 -1.0 833,918 - ABIE40_RS30725 0.57 -0.1 833,990 + ABIE40_RS30725 0.68 +1.2 833,991 - ABIE40_RS30725 0.69 +0.0 833,991 - ABIE40_RS30725 0.69 +1.0 834,058 + ABIE40_RS30725 0.79 +0.6 834,127 + +1.2 834,127 + +0.5 834,128 - -0.4 834,128 - -1.7 834,128 - -0.8 834,128 - +0.2 834,129 + +0.7 834,130 - +0.1 834,202 + +0.4 834,203 - +0.0 834,203 - -0.6 834,203 - +0.0 834,313 + ABIE40_RS30730 0.10 -2.6 834,324 + ABIE40_RS30730 0.11 -2.1 834,362 + ABIE40_RS30730 0.14 +1.2 834,363 - ABIE40_RS30730 0.14 -1.3 834,398 + ABIE40_RS30730 0.17 -0.2 834,399 - ABIE40_RS30730 0.17 +0.3 834,428 + ABIE40_RS30730 0.20 +0.3 834,428 + ABIE40_RS30730 0.20 -0.1 834,428 + ABIE40_RS30730 0.20 +1.1
Or see this region's nucleotide sequence