Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS30465

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS30460 and ABIE40_RS30465 are separated by 241 nucleotidesABIE40_RS30465 and ABIE40_RS30470 are separated by 314 nucleotides ABIE40_RS30460: ABIE40_RS30460 - SDR family oxidoreductase, at 776,317 to 777,192 _RS30460 ABIE40_RS30465: ABIE40_RS30465 - alpha/beta hydrolase, at 777,434 to 778,276 _RS30465 ABIE40_RS30470: ABIE40_RS30470 - cation:proton antiporter, at 778,591 to 779,865 _RS30470 Position (kb) 777 778 779Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 776.565 kb on + strand, within ABIE40_RS30460at 776.566 kb on - strand, within ABIE40_RS30460at 776.633 kb on + strand, within ABIE40_RS30460at 776.633 kb on + strand, within ABIE40_RS30460at 776.633 kb on + strand, within ABIE40_RS30460at 776.633 kb on + strand, within ABIE40_RS30460at 776.633 kb on + strand, within ABIE40_RS30460at 776.633 kb on + strand, within ABIE40_RS30460at 776.634 kb on - strand, within ABIE40_RS30460at 776.634 kb on - strand, within ABIE40_RS30460at 776.634 kb on - strand, within ABIE40_RS30460at 776.634 kb on - strand, within ABIE40_RS30460at 776.634 kb on - strand, within ABIE40_RS30460at 776.634 kb on - strand, within ABIE40_RS30460at 776.634 kb on - strand, within ABIE40_RS30460at 776.634 kb on - strand, within ABIE40_RS30460at 776.634 kb on - strand, within ABIE40_RS30460at 776.634 kb on - strand, within ABIE40_RS30460at 776.717 kb on + strand, within ABIE40_RS30460at 776.717 kb on + strand, within ABIE40_RS30460at 776.721 kb on + strand, within ABIE40_RS30460at 776.721 kb on + strand, within ABIE40_RS30460at 776.722 kb on - strand, within ABIE40_RS30460at 776.722 kb on - strand, within ABIE40_RS30460at 776.722 kb on - strand, within ABIE40_RS30460at 776.754 kb on - strand, within ABIE40_RS30460at 776.754 kb on - strand, within ABIE40_RS30460at 776.809 kb on + strand, within ABIE40_RS30460at 776.809 kb on + strand, within ABIE40_RS30460at 776.809 kb on + strand, within ABIE40_RS30460at 776.809 kb on + strand, within ABIE40_RS30460at 776.809 kb on + strand, within ABIE40_RS30460at 776.810 kb on - strand, within ABIE40_RS30460at 776.845 kb on + strand, within ABIE40_RS30460at 776.845 kb on + strand, within ABIE40_RS30460at 776.893 kb on + strand, within ABIE40_RS30460at 776.963 kb on + strand, within ABIE40_RS30460at 776.963 kb on + strand, within ABIE40_RS30460at 776.963 kb on + strand, within ABIE40_RS30460at 776.963 kb on + strand, within ABIE40_RS30460at 776.964 kb on - strand, within ABIE40_RS30460at 776.964 kb on - strand, within ABIE40_RS30460at 776.964 kb on - strand, within ABIE40_RS30460at 777.078 kb on + strand, within ABIE40_RS30460at 777.080 kb on + strand, within ABIE40_RS30460at 777.080 kb on + strand, within ABIE40_RS30460at 777.080 kb on + strand, within ABIE40_RS30460at 777.080 kb on + strand, within ABIE40_RS30460at 777.080 kb on + strand, within ABIE40_RS30460at 777.080 kb on + strand, within ABIE40_RS30460at 777.080 kb on + strand, within ABIE40_RS30460at 777.081 kb on - strand, within ABIE40_RS30460at 777.081 kb on - strand, within ABIE40_RS30460at 777.081 kb on - strand, within ABIE40_RS30460at 777.081 kb on - strand, within ABIE40_RS30460at 777.170 kb on + strandat 777.170 kb on + strandat 777.254 kb on + strandat 777.356 kb on + strandat 777.356 kb on + strandat 777.356 kb on + strandat 777.357 kb on - strandat 777.360 kb on + strandat 777.401 kb on + strandat 777.401 kb on + strandat 777.402 kb on - strandat 777.402 kb on - strandat 777.428 kb on - strandat 777.465 kb on + strandat 777.596 kb on + strand, within ABIE40_RS30465at 777.681 kb on + strand, within ABIE40_RS30465at 777.681 kb on + strand, within ABIE40_RS30465at 777.682 kb on - strand, within ABIE40_RS30465at 777.861 kb on - strand, within ABIE40_RS30465at 778.043 kb on + strand, within ABIE40_RS30465at 778.043 kb on + strand, within ABIE40_RS30465at 778.043 kb on + strand, within ABIE40_RS30465at 778.043 kb on + strand, within ABIE40_RS30465at 778.043 kb on + strand, within ABIE40_RS30465at 778.044 kb on - strand, within ABIE40_RS30465at 778.044 kb on - strand, within ABIE40_RS30465at 778.044 kb on - strand, within ABIE40_RS30465at 778.044 kb on - strand, within ABIE40_RS30465at 778.044 kb on - strand, within ABIE40_RS30465at 778.045 kb on + strand, within ABIE40_RS30465at 778.139 kb on + strand, within ABIE40_RS30465at 778.274 kb on + strandat 778.306 kb on + strandat 778.315 kb on - strandat 778.324 kb on + strandat 778.325 kb on - strandat 778.325 kb on - strandat 778.343 kb on - strandat 778.468 kb on + strandat 778.566 kb on + strandat 778.600 kb on + strandat 778.600 kb on + strandat 778.600 kb on + strandat 778.601 kb on - strandat 778.601 kb on - strandat 778.608 kb on + strandat 778.608 kb on + strandat 778.609 kb on - strandat 778.770 kb on - strand, within ABIE40_RS30470at 778.770 kb on - strand, within ABIE40_RS30470at 778.899 kb on + strand, within ABIE40_RS30470at 778.899 kb on + strand, within ABIE40_RS30470at 779.246 kb on - strand, within ABIE40_RS30470at 779.256 kb on + strand, within ABIE40_RS30470at 779.256 kb on + strand, within ABIE40_RS30470

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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776,565 + ABIE40_RS30460 0.28 +1.6
776,566 - ABIE40_RS30460 0.28 +0.1
776,633 + ABIE40_RS30460 0.36 +0.5
776,633 + ABIE40_RS30460 0.36 +1.3
776,633 + ABIE40_RS30460 0.36 +0.3
776,633 + ABIE40_RS30460 0.36 -1.0
776,633 + ABIE40_RS30460 0.36 -0.4
776,633 + ABIE40_RS30460 0.36 +0.4
776,634 - ABIE40_RS30460 0.36 +0.1
776,634 - ABIE40_RS30460 0.36 +0.4
776,634 - ABIE40_RS30460 0.36 +0.7
776,634 - ABIE40_RS30460 0.36 -0.5
776,634 - ABIE40_RS30460 0.36 +0.4
776,634 - ABIE40_RS30460 0.36 -0.0
776,634 - ABIE40_RS30460 0.36 +1.4
776,634 - ABIE40_RS30460 0.36 -2.5
776,634 - ABIE40_RS30460 0.36 -0.2
776,634 - ABIE40_RS30460 0.36 -1.0
776,717 + ABIE40_RS30460 0.46 +0.1
776,717 + ABIE40_RS30460 0.46 -0.9
776,721 + ABIE40_RS30460 0.46 +0.4
776,721 + ABIE40_RS30460 0.46 +0.3
776,722 - ABIE40_RS30460 0.46 -0.4
776,722 - ABIE40_RS30460 0.46 -0.0
776,722 - ABIE40_RS30460 0.46 -1.5
776,754 - ABIE40_RS30460 0.50 -0.5
776,754 - ABIE40_RS30460 0.50 -1.5
776,809 + ABIE40_RS30460 0.56 -0.2
776,809 + ABIE40_RS30460 0.56 +0.1
776,809 + ABIE40_RS30460 0.56 +0.2
776,809 + ABIE40_RS30460 0.56 +2.5
776,809 + ABIE40_RS30460 0.56 -0.6
776,810 - ABIE40_RS30460 0.56 +0.6
776,845 + ABIE40_RS30460 0.60 +0.9
776,845 + ABIE40_RS30460 0.60 +1.6
776,893 + ABIE40_RS30460 0.66 -0.1
776,963 + ABIE40_RS30460 0.74 +0.8
776,963 + ABIE40_RS30460 0.74 -1.0
776,963 + ABIE40_RS30460 0.74 -0.0
776,963 + ABIE40_RS30460 0.74 -0.1
776,964 - ABIE40_RS30460 0.74 +0.3
776,964 - ABIE40_RS30460 0.74 +0.6
776,964 - ABIE40_RS30460 0.74 +2.5
777,078 + ABIE40_RS30460 0.87 +0.2
777,080 + ABIE40_RS30460 0.87 +0.3
777,080 + ABIE40_RS30460 0.87 -0.4
777,080 + ABIE40_RS30460 0.87 -1.9
777,080 + ABIE40_RS30460 0.87 -0.9
777,080 + ABIE40_RS30460 0.87 +0.9
777,080 + ABIE40_RS30460 0.87 -0.0
777,080 + ABIE40_RS30460 0.87 -0.6
777,081 - ABIE40_RS30460 0.87 +0.8
777,081 - ABIE40_RS30460 0.87 +1.3
777,081 - ABIE40_RS30460 0.87 +0.7
777,081 - ABIE40_RS30460 0.87 -2.2
777,170 + +1.3
777,170 + +1.4
777,254 + -0.2
777,356 + +1.0
777,356 + +0.0
777,356 + -2.8
777,357 - -0.7
777,360 + -0.6
777,401 + +0.5
777,401 + -0.5
777,402 - -0.1
777,402 - +0.2
777,428 - -0.8
777,465 + -0.8
777,596 + ABIE40_RS30465 0.19 +1.0
777,681 + ABIE40_RS30465 0.29 +0.9
777,681 + ABIE40_RS30465 0.29 +1.2
777,682 - ABIE40_RS30465 0.29 +0.3
777,861 - ABIE40_RS30465 0.51 +2.0
778,043 + ABIE40_RS30465 0.72 +1.1
778,043 + ABIE40_RS30465 0.72 +2.9
778,043 + ABIE40_RS30465 0.72 -0.4
778,043 + ABIE40_RS30465 0.72 +0.8
778,043 + ABIE40_RS30465 0.72 -1.0
778,044 - ABIE40_RS30465 0.72 -1.6
778,044 - ABIE40_RS30465 0.72 -0.9
778,044 - ABIE40_RS30465 0.72 -0.6
778,044 - ABIE40_RS30465 0.72 -0.5
778,044 - ABIE40_RS30465 0.72 +0.0
778,045 + ABIE40_RS30465 0.72 -0.2
778,139 + ABIE40_RS30465 0.84 -0.7
778,274 + -0.1
778,306 + -0.1
778,315 - +0.6
778,324 + -0.8
778,325 - -1.7
778,325 - +1.3
778,343 - +0.3
778,468 + -0.9
778,566 + -1.0
778,600 + -0.5
778,600 + -1.5
778,600 + -1.0
778,601 - +0.1
778,601 - +0.4
778,608 + -1.8
778,608 + -1.4
778,609 - -1.3
778,770 - ABIE40_RS30470 0.14 -1.5
778,770 - ABIE40_RS30470 0.14 -0.1
778,899 + ABIE40_RS30470 0.24 -0.8
778,899 + ABIE40_RS30470 0.24 -0.1
779,246 - ABIE40_RS30470 0.51 +1.2
779,256 + ABIE40_RS30470 0.52 +2.0
779,256 + ABIE40_RS30470 0.52 -0.2

Or see this region's nucleotide sequence